nfat5a (LOC108274760,LOC108428435)


Basic Information

Item Value
gene id nfat5a
gene name LOC108274760,LOC108428435
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18747827 ~ 18796259 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU178948
tttttttgtttaatatatatttttttttaaacacatattaAGTGAgccatacatacagtatttttgtAAGTCTGAAATTACTAAATGTACTGtgtacatttcaaaatattgaattttGTGTCCCTTCTGCAGTACTTCATGCATTATgtcacaatgtttttttgtccCATCACTGTGCTATGAAGCAAACCTTCTGTGTCATATGAATCTCAAATATTCAAATTAGACCTGAAAAATACAAGAGGTTTTTATACAGGCTGATGATTTGGAACTTGTGTTCCATGCAAAGTCCAAACTAAATGGTAACTCTGATTTCAGAGTGAAAGAATGTGTTTTTACCTCATGGTGTAGAGACATAGGTTTCACACTAGATCTAATTAAGGACCAATTAAAAgacacctttttatttttagaatatgGCAGCAGAACACTTTATGGATGAATTTTTTGAGTTTTGTGcgtataactttttttttttgtttgttttttttaatcttggtTCGAAAGGCCATGTCATACAAGAGATAACAAGCagaaacaggttaaaaaaaacagcatttctgcACAGTCCATCATTGTAAGAACTACATAAAATGTTCAGTATGTTATGCATACATTCTATGTTCTGTTCAATTGTGCTATTCTTATTGGAAGTACTTTGTGCCTTTTAAAAACCGTTCCCCCTTACTTCTAAAGTACGTTTTTAACTAAATTAGTTCTGCTTTCAAAGAATCCAAAAGTCACAAATTTATTCTAATTCCATGTTTAACTGTCTTGTCAACATGTTGTCTAATCCAAATGCAGAGATGCATTTGAGCTTTCTGTCATGAAACTGCTATGCAGCTCCACCACTTTATTTGGACTGTTGGTTTGCCTCTTATGATTTGCTAGAACAAGGTacagagcagaaaaaaatcaacatacttttgtttgttagttCAGTGTGTGAAATGGTTTTGCCACAATCTTAGAGTGCTTTCATCACTCAGCAgtagtttgtgtttttaaagttaattttCTTCATATGCATTTTACTGTGGAATATTACTTACCCTAGAAGTCACAGGGATAACAGTTTACTTTTCAGTCCATGTGAAGTAACAACAGTTAACATAACTATATTTGTCTTTTGCTTTAAACCAGTACACTCCTGAATTTGTATACTCTTGCAGTtctatttctgtaaaatgtgCTGCTATCGGTATGAAATAA
>XM_026920021.2
CTGCGTCCCATGCCGCCTACAAGCCCCCGAGCCTGTGCGCATGCGTGCGAAGGGGGCGGAGTCGTTCAGGAAACGGTGAATGGCTGTTATGGCTAACTAGCTAGTCAGATgggtgaagagaaattgtaaagcGCTCGTTTCAGGGTACTGAATAAACGCAGATGTCTACAGTCCGGTTTTTAATGCACTTAGGAACTATATTGATGCCTGAACCAGTGTCCTCGCTTGCCTAGCTTGGCCTCCGCAGCCACTTGCCCATTGAGTTATCCGCCTGGAGGAGTGGGAGAAGCCGTTAGCCCTGCTCTCACTAGGCTCTGAGCTAACCACACAGCTAACCTCGCTAAGTTAGTATGCCCTCTGATTTCATAGCTCTTCTAAGCACGGATATCGACCTCAATTCACCCAAATCTCTGTATTCAAAAGaGTCAGTGTATGACCTCCTGCCTAAAGAACTTCAGCTTCCTCTAGCCTCACAGGACAGCCACATCATGAGCCAGAAGAGTGGTGGAGAGGCAGGCCCTCTTCCCTCTGCTGCAGTGGCTTCAGATGCAGTCACTCCCGGTGTTGTTTCATCCTCCCCTGGAGGGCACAACAGTGCTTCTTCCTGTCCCAGCATGCACTGTGCTACTTCAGCTCCAGAGCAGTCTTCCAGGCTCCACTGTCTCCCTGTCGAGGTTCTGGGAGCGGAGCCTGGTTCAGCTTCTGGTATCAGTGGGACTGGTGGGAATGATGGTGTCGGAGCAGCGGCCCATCAGACACCCTCAAAGCGACGCACTGTACTTAACATCTCTCCACCGCCAGAAGACCTGCTTGACGACAGCCGCATGTCCTGCCAGGATGAGGTAACACTCAACCCAGACTCTGAGCAGAGCGGCAGCATATGGATGGACGACTCCGTTTCAAACTTTAGCATGCTGAGCAACAGTTCGTACAATGACAACACTGAGGTTCCTCGGAAATCCCGTAAGCGAACTCCCCGCCAGAGGCCAGGCCCGAAGCCTGTGGCCAGAGATGAATCAACCATGGATGTGTTTGATGCTGACAGCGCTAAAGCTCCACACTTTGTACTTTCACAACTTGGCTCTGAAGGAAAGGGCAGTCTCAAAGGGAGCACCCTGGAGGTGGCTGGCAGTCAGAAAGGTGGAATTCTTTCAACACAGTATCCGCAAAAGAGTGAGGGGAAAGAACTAAAGATTCTAGTACAGCCTGAGACACAACACCGAGCACGATACCTTACAGAGGGCAGCAGAGGATCCGTCAAAGACCGCACACAGCAAGGCTTCCCCACAGTCAAATTAGAGGGTGTGAATGAACCAGTTGTTCTCCAAGTGTTTGTGGCTAATGATGCTGGACGTGTAAAGCCTCATGGCTTCTATCAAGCATGTAAAGTGACTGGACGTAACACGACGGCCTGTAAAGAGGTGGATATCGAAGGGACCACAGTTATTGAAGTGAGCCTTGAGCCGAGCAACTCCATGACTTTAGCAGTGGACTGTGTTGGGATATTGAAATTGAGGAATGCAGATGTTGAAGCCCGAATAGGAGTGGCTGGCTCTAAAAAGAAAAGTACCCGGGCTCGTTTAGCATTCAGAGTTAACATCCCCAGACCGGATGGCTCTGTCCTCACCCTGCAGACCCTTTCTTCGCCAATCCTCTGTACCCAACCTGCTGGAGTGCCTGAAATTCTCAAAAAGAGTCTTCATACCTGCTCAGTGACTGGAGGAGAAGAAGTCTTCATTATTGGCAAGAACTTCCTTAAGGGAACCAAAGTTATTTTTCAGGAAATTGCCACAGATGATAGCTCGTGGCAGGCTGAAGCAGAGATTGACATGGAACTTTTCCATCAAAATCACCTAGTTGTAAAGGTGCCTCCTTATCATGACCTGACAGTGACCTCACCTGTATCAGTTGGAATCTCTGTGTTGACAAATGCAGGAAGAACACATGACCTACAGTCTTTCACCTATACTCCTCAGCCAGAAAAAGTTGATGTTCCAGTGAAGTCAGAATTGTCAGTAACAGCCAAGCCTTGCACTTTTGAAGAGCAGATAAATGCAATGCAAACTGGCGCCAACAGTCTTAACAATACCTTGATGGCCCCAATGATATCCATAGTCAAAAGGGAAGAAGTAACCCCAATGGAAATCTCTACCAATTCTACGACATCTAACATTTTTAAGCCTGCAGAGGTCCTTAATTCAGACCCACAGATTTTGGAAATTACCACCATACTTCCTACTAGCCCTGTGCCTCTGCCATCTGTTGACTCTCAACAGTCAGTGCCCCCAATGTTTGTACCTCCTCCAGAACCCCTTACAGCAATTCAGAAACAGGATATACCCACGCCTTCCTTTCAAGTCTCCTTGTCAGAAGACGCCACTGTTCTTCAGCCCGTGCCCCCACAGGTCCCTCAGCAGTTCTTGAGGGAAACCCCTGAGACTTTGTCACCAGAAGACAACAGTCCAGATGGCACAGGAATGGTGGTAATGGGGATGGAGTCTAGGCCTCCCCCTTCCCAGCAACCCCAGGTCCAGAACATTTTGCCTCAAGATGAGGTAGAACAGCTGGAAAGAGCTGTTAGGGAGTTgcaagaacaacagcaacttAATTCTGTGATTTATGATTCAAACCCTTCTGCTGAAAACCTCCAGCAACATGTCCAGGAAAACATGAACAGTTTAAGGCTGGGTGGCAACGAGAACACTTTGACCaatcaacagcagcagcaacaagaACATAATATATTACAGAATCTGCAGCATCAGCATCAAAAAGCTCTAGTTGATCTGCAGCATCAACAAACATTCTTGAAGAATCTGCAACAGCAACAAAAGGTCTTGGAGAACtatcagcaacaacaacagtcACATCAGAAAGTTCTGGAAAACCTGCAGCACCAGAAGGTTCTTGGGGATATTCAGCAACAAAGCTCTTTGGTGAATATTCAGCATCAGAAAGTACTTGATAATctgcaacagcaacaacagcatcAGCAGAATCTAGAAAAACTTCAGCAAGAGCAACAACATCAAGAGGTCTTGGAAAACTTGCAGAAACAGTTACAATCAGAACTCTTACAGCCACAGATTCCCATGCAATGCACACCAAGTTACCCTGTAGTACCACAAGATCAAATGTCTGAGCATCAAAGCACCACGCAGATAGATGGCTCTCTGTCACAGCCATCTGATGGTTTTCTCCAGAATTCatccccacagccacagcaGCAAACACTTTTTCAACAGGCCAGGGGGCTACTGACTATTCAGACATCTAGCTTTCTTCAGCAGCCACCCTCCCAAACCTCACCTCCTCAGCAGCTGTTTCAGAGTCACACACCTATTACTGACACACAGGAACCACAGACAGGGCTCTTTGGCACTTCTAAAGCTACCCAGGTCCAACCAGCTTTATTTCCCAATACAGTCACAATGCTGACAAGCACTAACTTATCTTCTGAGCAACAGGCTCCCTCAACTACCCTGTTCATTTCTCAGGGTGTACTGCATAGCCAGATAACATCCAATAATTCTCAaaatcaacaacagcaacaaatcGCTTTTCTCACTCCCATGGAAACGTCAACCTCAGCAACCCAGTCAGTGTCACTTTTTCAGGGACAACCCCAGTTGTCCACTCCAATGGAGCAGCACTCTTCCCAGTCTCAGCAAATACCAACACCTCAGCAAGCTTCCCTGTTCCAGAATATTTCTACAATATCCCAAAGTCAGGGCCAGCAGCAACCACAGCCTGGCTTACTGTTCTGTGCTACTCCTGTTAATCCTCAAgacctccctcagactctcctGTTCAGTACCCAGAACCAGGGTCCAATGGGTGGCAACCCACTGCCACAAAATATCTTTCAGGAGCAGCAACCCATGCAGGTAGTCCCAAGCCCTGGTAATATTACAGCAGACAACCCCACAAGTCAGTCTACAGTCTCCTCCTCACAGTCAACACAAAGTCCACAGATTCTTTTTCCCCAAGCCAGTGTGGTGAATGTGGCTCAGCAAGATTCAACAGAGCCTATGTCTTTTCAAGATGAGACCTCTGTTGTGGGTCACTCGTCTGCTGGTATGCCTACAACCCAGCCAGGACTCTTTCAGGACCAGCAACCTATGCAGGTTGTCCCAAGTGCTAGTAACTGTGCCTCTGTCCCTTCCACAGACCAGGGcactgttaatatttttttgccaCAGGCAGCCATTTCAGCGCTCCAAAGTGGTGTAGGCACTCAAGAGTTACCTCAGACTGCTACAGCAACTGCCATGTTTAGTGGTCAGGGTGGAGTGGCAATTGGAGGGTTGCAGAGCTCCCCGGCCACATCCAGTCAACAGAATCCAGATTCGATTTTTCAGACAGCTTTAGGGGGAACCCTCAACCAGCCTGGACAGCCAGGACAAACAGGcctatttatttttgaaatccCCACTGAATGTGGTCCGTTATTAACCCCTCCTGGTCCTACGTTGACAGACCAACTTGTCACCATGGGGCATCCTAGATCAGATCACAACCAGAACCAGCTTCAGAACAGTGCTCAGATTCATAGTTTACTAGAGCAGTCCAACAACCTCAGCGAGAAGATCGATGAACTACTAGAGCAGTTTGAGGAACAAGGGAAGACGCTTCCCAGGGACTTCTTACAACAGTAAAATGCATTGAAACGTCACCTTGGTAAGTCTTCTTGAGCTCAGTtttgagctcacagacacaagAGTGACTTGGGCAACTTGAAGGATCTAAATTTTTAAAGCCTTTAATATGTGTTTAATGGATTATGTAGGCTGTTACAGGGGGTATAATCATGGAACCAAATAATTGGGgccaataaaatgttttgtcaaGTCAGTGTTGTGATCTGTCATGGCATTTCATATTTCGGCGGTAATGTCATGTTGACAAATTCCGTCTCTTGTTATACGTTATCATCTTCCATCTGTCTAACAGAAGCTGACACAAGTTATCTAGCAAAACTGTTGTCAATCTGATGTAATACTTTGGACTAATTCATTGTCTGTGAATTTTTAGATGGTGTGTTTAGCACTTTATTGAGTTTTTGAAGTGAGTTACATGCTTTTTAGCTTTCAAACCATTTGTATCCATATTTGCCTCTTTTTATAGTCTTTCCCAAAAGATCCTCTATTTTGTACCAGCTCAGTCATACTTACTCTCCATTTTCATATTAACCTATATAACGAGCCATGGttactgcttttttttaggTGATTGTATGCAGCGTCCTCATTAGTCTCAATCCATACgttatgtttaacatttactgtacatatttgtataaatgatatttttgattgtcatctaatatattttataaagaaGCGGTCCATCTTTAATCATTCCTGTCATGGACATGTTATATCACTTGTGTACATTGTTACATAATGATGATGTGTCAGATACATACATAAGCTAGCCTGGTGGACTGCCCTAAAACTCAAGTTAGTTTCCAATATATAGTACGTAATAAATAGCAAGGTGTTACTGTTGGACCTCAGAAGGACATTGGCAATGTCCACATAATCTTAAGCAGTGATCTATTTAGATGGAATATTTAGTCCAATTGTCAGTTTCAGGATATTCCACCAAGCTATAGATATGCATGCCCATGACatagtgtgtatactgtgtgtctctctgtgtgtgtgttttgtgttcaaTAGAAGCAAATAGTGTATTGATATTTGTACCATGTTACATGAGTTTCAatccatgtttttatattaaacgCATTAGATGTACCGTTAAATTGGGCACTAGCTACTGGAAAGATTTATTAATGTGAAAGGTTGATTGAGCACcatgtcattcatttattatgttGGATTTGGTAAATGAAGTTGTACAGGGTTTATTTTTAAACGCGTTGACATAGtggtgctactttgtttacataaattacataaataaccATTGTTATATCAACCTTTGGCCTGATATTATTACAAAATGCTTTGTTTCTAAAGCTTGTGGTCACGGTTTTTATTTTCGGTCCCTGCTTTCTCTGATGTTATTGGCCTATTTTCTCTTATTGGGAGACTTTTTGACgattttcattttgttagaTGACAACTTCCCCACAATcataaatgtttacagtttcccattatttaaaaaaaacaaaacaataaaaacagtgttttcatttccagaagcaccttttgctttgaCAATGTTCGCATGCAAATAAATTTTgtttatagaaatgtaaattCCTCCAAAATACATTTGcattatatgatttatttcccttcccttccctaaTTTGTCCATCATTGTATAGTCATTGGTCATCTAATTATGTATTTAACACTTGCTGCAAACTCTATAAAAATAACACTGTAGTTGTAGTGATATTGTTTTCCTCTGTGTACTATTTGTTTGGTGTGTTGTGCTGTCTATGTAGtaaaatgtctgtgtttttttttttttttttaatatatttttttttaaacacatattaAGTGAgccatacatacagtatttttgtAAGTCTGAAATTACTAAATGTACTGtgtacatttcaaaatattgaattttGTGTCCCTTCTGCAGTACTTCATGCATTATgtcacaatgtttttttgtccCATCACTGTGCTATGAAGCAAACCTTCTGTGTCATATGAATCTCAAATATTCAAATTAGACCTGAAAAATACAAGAGGTTTTTATACAGGCTGATGATTTGGAACTTGTGTTCCATGCAAAGTCCAAACTAAATGGTAACTCTGATTTCAGAGTGAAAGAATGTGTTTTTACCTCATGGTGTAGAGACATAGGTTTCACACTAGATCTAATTAAGGACCAATTAAAAgacacctttttatttttagaatatgGCAGCAGAACACTTTATGGATGAATTTTTTGAGTTTTGTGcgtataactttttttttttgtttgttttttttaatcttggtTCGAAAGGCCATGTCATACAAGAGATAACAAGCagaaacaggttaaaaaaaacagcatttctgcACAGTCCATCATTGTAAGAACTACATAAAATGTTCAGTATGTTATGCATACATTCTATGTTCTGTTCAATTGTGCTATTCTTATTGGAAGTACTTTGTGCCTTTTAAAAACCGTTCCCCCTTACTTCTAAAGTACGTTTTTAACTAAATTAGTTCTGCTTTCAAAGAATCCAAAAGTCACAAATTTATTCTAATTCCATGTTTAACTGTCTTGTCAACATGTTGTCTAATCCAAATGCAGAGATGCATTTGAGCTTTCTGTCATGAAACTGCTATGCAGCTCCACCACTTTATTTGGACTGTTGGTTTGCCTCTTATGATTTGCTAGAACAAGGTacagagcagaaaaaaatcaacatacttttgtttgttagttCAGTGTGTGAAATGGTTTTGCCACAATCTTAGAGTGCTTTCATCACTCAGCAgtagtttgtgtttttaaagttaattttCTTCATATGCATTTTACTGTGGAATATTACTTACCCTAGAAGTCACAGGGATAACAGTTTACTTTTCAGTCCATGTGAAGTAACAACAGTTAACATAACTATATTTGTCTTTTGCTTTAAACCAGTACACTCCTGAATTTGTATACTCTTGCAGTtctatttctgtaaaatgtgCTGCTATCGGTATGAAATAAAGATAGATCTGAAATTGTTC

Function

NR:

description
nuclear factor of activated T-cells 5-like isoform X1

GO: NA

KEGG:

id description
K17335 NFAT5; nuclear factor of activated T-cells 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU178948 False 1212 lncRNA 0.32 2 18747827 18796239
XM_026920021.2 True 7676 mRNA 0.42 14 18777781 18796259

Neighbor

gene id symbol gene type direction distance location
glg1a LOC108274991,LOC108428438,LOC107559147 coding upstream 40516 18685137 ~ 18707311 (+)
ticrr ticrr coding upstream 75775 18659641 ~ 18672052 (+)
c9h11orf96 c14h11orf96,cunh11orf96,clg19h11orf96,si:ch1073-281m9.1,LOC103025886,LOC107580776,LOC107661503,LOC107696240,LOC107575890 coding upstream 93652 18652771 ~ 18654175 (+)
alkbh3 alkbh3 coding upstream 102121 18636689 ~ 18645706 (+)
hsd17b12a hsd17b12,LOC107696265,LOC107661451,LOC107573907,LOC107716735,LOC107753600 coding upstream 113059 18622188 ~ 18634768 (+)
hprt1l hprt1l,LOC108274759,LOC107701578,LOC107723981,LOC107688789,LOC108428369,LOC107559153,LOC105895651,LOC107570646,LOC105022178 coding downstream 3084 18799343 ~ 18806123 (+)
wwox wwox,LOC107559152 coding downstream 10667 18806926 ~ 18979459 (+)
LOC117598072 NA coding downstream 280336 19076595 ~ 19077868 (+)
slc7a10b slc7a10,slc7a10b,LOC108274532,LOC108428368,LOC107679961,LOC107555706,LOC107752484,LOC105900738 coding downstream 330620 19126879 ~ 19140940 (+)
zgc:153293 LOC108274949 coding downstream 352808 19149067 ~ 19154118 (+)
LOC113530068 NA non-coding upstream 127006 18601539 ~ 18620821 (+)
G150958 NA non-coding upstream 195690 18551893 ~ 18552137 (+)
G150954 NA non-coding upstream 209972 18537261 ~ 18537855 (+)
G150952 NA non-coding upstream 217119 18530139 ~ 18530708 (+)
G150932 LOC108436944 non-coding upstream 303775 18425317 ~ 18444052 (+)
G151093 NA non-coding downstream 149016 18945275 ~ 18945942 (+)
G151084 NA non-coding downstream 158790 18955049 ~ 18997932 (+)
G151134 NA non-coding downstream 313584 19109843 ~ 19110973 (+)
G151395 NA non-coding downstream 430390 19226649 ~ 19227893 (+)
G151417 NA non-coding downstream 521727 19317986 ~ 19393161 (+)
urahb LOC108274538 other upstream 23141 18721595 ~ 18724686 (+)
rfwd3 rfwd3,LOC107754982 other upstream 64399 18675010 ~ 18683428 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 563794 18182554 ~ 18184033 (+)
G150589 LOC108274445 other upstream 905292 17834237 ~ 17842535 (+)
LOC113529564 ano9,LOC108442698 other upstream 2925236 15807990 ~ 15822591 (+)
faap24 faap24 other downstream 324892 19121151 ~ 19125201 (+)
G151401 NA other downstream 464365 19260624 ~ 19263893 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other downstream 527072 19323331 ~ 19384904 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other downstream 865584 19661843 ~ 19748080 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 3256355 22052614 ~ 22058158 (+)

Expression


Co-expression Network