urahb (LOC108274538)


Basic Information

Item Value
gene id urahb
gene name LOC108274538
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18721595 ~ 18724686 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU178953
GCTCCAGGATAAACACACAGCCAGTTCAGTCAGAATCACCCTCATTTCCGAGTGAGCGGGCAAGCTGGCCAGATAAACATTGCATCTTTCTGCACAACAAagTTACATCAGATATCACCACTTCATCGTCAGAGGGACTACAAGAGGAAAAAGGATTCaggactgatttatttttattttttgtcttgctGAACAGATACGTTTGAGATGGATAGTCCTCTTGTTACCCATGTGCTGAACACTGCAGATGGGGTTCCTGCAGCACGCATTGCCCTCAGTCTGCATCGTCTAGACCCTCAGATGGCCCTCTGGAACCTTATCACTACTGGAACCACAGATGAGAATGGCCACTGTCCAGGGCTAATCACCAGACAAGATTTCACCATAGGGATGTACAAATTACGTTTTGAGACTGGACAGTATTGGGAAAGTTTGGGCCAGACCAGCTTTTACCCATATGTAGAGATTGTCTTCACAATAACAGACCTGGACCAGAGGTTTCATGTGCCTCTACATCTCAGcagatacacatacagtgtCTACAGGTGTAGCTGTAGGCAGTAGTAGGCACCTGATTCAGCTGATTCGGCTAGTTGAAAGAACTTTTTTGAGATGTGTTCATCCTTTTCTCTTTGTAACACACCAAATTCAGCCTTGGTAATGACCTGGTGAGTTGAGTCTAGTGTATTAACTCCTAAAATGTGTAGTGATGTGGTTTTGAGACCTTGATTTTTCTGTCTGCTGTAAAGATTGACCAATctacaagcttttttttattgcttttctttttaaatggaCTGTCCATATGGTGTTAGAATACAGCACTAAACATATGAAAgttaacattttttgtaaaGGGTACTGAAAGTAACgaataaataaacttttctaCCTGGCATGGTGGTGTTAGTGTTTCtgtctcacagcttcagggctcaatcctgagctcgggttactgtctgtatggaggttttcatattttccatgtgtttgtgtggtttctTCCATGATCACTGGTTTCTtttcccatctcccaaaaatgCTAGTAGCCAGATTGGGTACTCTAAAT
>XM_026919751.2
GGATAAACACACAGCCAGTTCAGTCAGAATCACCCTCATTTCCGAGTGAGCGGGCAAGCTGGCCAGATAAACATTGCATCTTTCTGCACAACAAagATACGTTTGAGATGGATAGTCCTCTTGTTACCCATGTGCTGAACACTGCAGATGGGGTTCCTGCAGCACGCATTGCCCTCAGTCTGCATCGTCTAGACCCTCAGATGGCCCTCTGGAACCTTATCACTACTGGAACCACAGATGAGAATGGCCACTGTCCAGGGCTAATCACCAGACAAGATTTCACCATAGGGATGTACAAATTACGTTTTGAGACTGGACAGTATTGGGAAAGTTTGGGCCAGACCAGCTTTTACCCATATGTAGAGATTGTCTTCACAATAACAGACCTGGACCAGAGGTTTCATGTGCCTCTACATCTCAGcagatacacatacagtgtCTACAGGTGTAGCTGTAGGCAGTAGTAGGCACCTGATTCAGCTGATTCGGCTAGTTGAAAGAACTTTTTTGAGATGTGTTCATCCTTTTCTCTTTGTAACACACCAAATTCAGCCTTGGTAATGACCTGGTGAGTTGAGTCTAGTGTATTAACTCCTAAAATGTGTAGTGATGTGGTTTTGAGACCTTGATTTTTCTGTCTGCTGTAAAGATTGACCAATctacaagcttttttttattgcttttctttttaaatggaCTGTCCATATGGTGTTAGAATACAGCACTAAACATATGAAAgttaacattttttgtaaaGGGTACTGAAAGTAACgaataaataaacttttctaCCTGG
>XM_034307512.1
CACACAGCCAGTTCAGTCAGAATCACCCTCATTTCCGAGTGAGCGGGCAAGCTGGCCAGATAAACATTGCATCTTTCTGCACAACAAagTTACATCAGATATCACCACTTCATCGTCAGAGGGACTACAAGAGGAAAAAGGATTCaggactgatttatttttattttttgtcttgctGAACAGATACGTTTGAGATGGATAGTCCTCTTGTTACCCATGTGCTGAACACTGCAGATGGGGTTCCTGCAGCACGCATTGCCCTCAGTCTGCATCGTCTAGACCCTCAGATGGCCCTCTGGAACCTTATCACTACTGGAACCACAGATGAGAATGGCCACTGTCCAGGGCTAATCACCAGACAAGATTTCACCATAGGGATGTACAAATTACGTTTTGAGACTGGACAGTATTGGGAAAGTTTGGGCCAGACCAGCTTTTACCCATATGTAGAGATTGTCTTCACAATAACAGACCTGGACCAGAGGTTTCATGTGCCTCTACATCTCAGcagatacacatacagtgtCTACAGGTGTAGCTGTAGGCAGTAGTAGGCACCTGATTCAGCTGATTCGGCTAGTTGAAAGAACTTTTTTGAGATGTGTTCATCCTTTTCTCTTTGTAACACACCAAATTCAGCCTTGGTAATGACCTGGTGAGTTGAGTCTAGTGTATTAACTCCTAAAATGTGTAGTGATGTGGTTTTGAGACCTTGATTTTTCTGTCTGCTGTAAAGATTGACCAATctacaagcttttttttattgcttttctttttaaatggaCTGTCCATATGGTGTTAGAATACAGCACTAAACATATGAAAgttaacattttttgtaaaGGGTACTGAAAGTAACgaataaataaacttttctaCCTGG
>XM_034307513.1
TTCCGAGTGAGCGGGCAAGCTGGCCAGATAAACATTGCATCTTTCTGCACAACAAagTCAGCACGAATTCAGCCCAAAATTTGTACTCAAACATCATACACCATTTCAGTTACATCAGATATCACCACTTCATCGTCAGAGGGACTACAAGAGGAAAAAGGATTCaggactgatttatttttattttttgtcttgctGAACAGATACGTTTGAGATGGATAGTCCTCTTGTTACCCATGTGCTGAACACTGCAGATGGGGTTCCTGCAGCACGCATTGCCCTCAGTCTGCATCGTCTAGACCCTCAGATGGCCCTCTGGAACCTTATCACTACTGGAACCACAGATGAGAATGGCCACTGTCCAGGGCTAATCACCAGACAAGATTTCACCATAGGGATGTACAAATTACGTTTTGAGACTGGACAGTATTGGGAAAGTTTGGGCCAGACCAGCTTTTACCCATATGTAGAGATTGTCTTCACAATAACAGACCTGGACCAGAGGTTTCATGTGCCTCTACATCTCAGcagatacacatacagtgtCTACAGGTGTAGCTGTAGGCAGTAGTAGGCACCTGATTCAGCTGATTCGGCTAGTTGAAAGAACTTTTTTGAGATGTGTTCATCCTTTTCTCTTTGTAACACACCAAATTCAGCCTTGGTAATGACCTGGTGAGTTGAGTCTAGTGTATTAACTCCTAAAATGTGTAGTGATGTGGTTTTGAGACCTTGATTTTTCTGTCTGCTGTAAAGATTGACCAATctacaagcttttttttattgcttttctttttaaatggaCTGTCCATATGGTGTTAGAATACAGCACTAAACATATGAAAgttaacattttttgtaaaGGGTACTGAAAGTAACgaataaataaacttttctaCCTGG

Function

NR:

description
5-hydroxyisourate hydrolase-like

GO:

id name namespace
GO:0006144 purine nucleobase metabolic process biological_process
GO:0006810 transport biological_process
GO:0033971 hydroxyisourate hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178953 True 1069 TUCP 0.42 5 18721595 18724686
XM_026919751.2 False 796 mRNA 0.42 4 18721601 18724513
XM_034307512.1 False 883 mRNA 0.42 5 18721608 18724513
XM_034307513.1 False 903 mRNA 0.41 5 18721640 18724513

Neighbor

gene id symbol gene type direction distance location
glg1a LOC108274991,LOC108428438,LOC107559147 coding upstream 14284 18685137 ~ 18707311 (+)
ticrr ticrr coding upstream 49543 18659641 ~ 18672052 (+)
c9h11orf96 c14h11orf96,cunh11orf96,clg19h11orf96,si:ch1073-281m9.1,LOC103025886,LOC107580776,LOC107661503,LOC107696240,LOC107575890 coding upstream 67420 18652771 ~ 18654175 (+)
alkbh3 alkbh3 coding upstream 75889 18636689 ~ 18645706 (+)
hsd17b12a hsd17b12,LOC107696265,LOC107661451,LOC107573907,LOC107716735,LOC107753600 coding upstream 86827 18622188 ~ 18634768 (+)
tdrd12 tdrd12 coding downstream 3847 18728533 ~ 18754646 (+)
si:ch1073-174d20.2 LOC108275319,LOC108428436,LOC107723988,LOC107688752,LOC107570650,LOC107701574,LOC103465653,LOC106927143 coding downstream 36417 18761103 ~ 18769419 (+)
hprt1l hprt1l,LOC108274759,LOC107701578,LOC107723981,LOC107688789,LOC108428369,LOC107559153,LOC105895651,LOC107570646,LOC105022178 coding downstream 74657 18799343 ~ 18806123 (+)
wwox wwox,LOC107559152 coding downstream 82240 18806926 ~ 18979459 (+)
LOC117598072 NA coding downstream 351909 19076595 ~ 19077868 (+)
LOC113530068 NA non-coding upstream 100774 18601539 ~ 18620821 (+)
G150958 NA non-coding upstream 169458 18551893 ~ 18552137 (+)
G150954 NA non-coding upstream 183740 18537261 ~ 18537855 (+)
G150952 NA non-coding upstream 190887 18530139 ~ 18530708 (+)
G150932 LOC108436944 non-coding upstream 277543 18425317 ~ 18444052 (+)
G151093 NA non-coding downstream 220589 18945275 ~ 18945942 (+)
G151084 NA non-coding downstream 230363 18955049 ~ 18997932 (+)
G151134 NA non-coding downstream 385157 19109843 ~ 19110973 (+)
G151395 NA non-coding downstream 501963 19226649 ~ 19227893 (+)
G151417 NA non-coding downstream 593300 19317986 ~ 19393161 (+)
rfwd3 rfwd3,LOC107754982 other upstream 38167 18675010 ~ 18683428 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 537562 18182554 ~ 18184033 (+)
G150589 LOC108274445 other upstream 879060 17834237 ~ 17842535 (+)
LOC113529564 ano9,LOC108442698 other upstream 2899004 15807990 ~ 15822591 (+)
svip svip other upstream 2996504 15721278 ~ 15725091 (+)
nfat5a LOC108274760,LOC108428435 other downstream 23141 18747827 ~ 18796259 (+)
faap24 faap24 other downstream 396465 19121151 ~ 19125201 (+)
G151401 NA other downstream 535938 19260624 ~ 19263893 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other downstream 598645 19323331 ~ 19384904 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other downstream 937157 19661843 ~ 19748080 (+)

Expression


Co-expression Network