G151093


Basic Information

Item Value
gene id G151093
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18945275 ~ 18945942 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU178978
cttcctcacacacatttcttactATGAGGTATAAGAACACgcttcctcacacacatttcttactGTGAGTTATAAGAACATgcttcctcacacacatttcttactGTGAGGTATAAGAACACgcttcctcacacacatttcttactATGAGGTGTAAAACATGATCACTGTATCTATGCCAGTTCCCTGTGTAGCTCCTGTCCCTGTTTTAATCTCACTGTGTTAATGCGTACAATTGGAAAGGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178978 True 246 lncRNA 0.40 3 18945275 18945942

Neighbor

gene id symbol gene type direction distance location
hprt1l hprt1l,LOC108274759,LOC107701578,LOC107723981,LOC107688789,LOC108428369,LOC107559153,LOC105895651,LOC107570646,LOC105022178 coding upstream 139152 18799343 ~ 18806123 (+)
si:ch1073-174d20.2 LOC108275319,LOC108428436,LOC107723988,LOC107688752,LOC107570650,LOC107701574,LOC103465653,LOC106927143 coding upstream 175856 18761103 ~ 18769419 (+)
tdrd12 tdrd12 coding upstream 190629 18728533 ~ 18754646 (+)
glg1a LOC108274991,LOC108428438,LOC107559147 coding upstream 237964 18685137 ~ 18707311 (+)
ticrr ticrr coding upstream 273223 18659641 ~ 18672052 (+)
LOC117598072 NA coding downstream 130653 19076595 ~ 19077868 (+)
slc7a10b slc7a10,slc7a10b,LOC108274532,LOC108428368,LOC107679961,LOC107555706,LOC107752484,LOC105900738 coding downstream 180937 19126879 ~ 19140940 (+)
zgc:153293 LOC108274949 coding downstream 203125 19149067 ~ 19154118 (+)
LOC113529841 LOC108274949,LOC108428426 coding downstream 208349 19154291 ~ 19162148 (+)
ccdc77 ccdc77,LOC107754361 coding downstream 221327 19167269 ~ 19175104 (+)
LOC113530068 NA non-coding upstream 324454 18601539 ~ 18620821 (+)
G150958 NA non-coding upstream 393138 18551893 ~ 18552137 (+)
G150954 NA non-coding upstream 407420 18537261 ~ 18537855 (+)
G150952 NA non-coding upstream 414567 18530139 ~ 18530708 (+)
G150932 LOC108436944 non-coding upstream 501223 18425317 ~ 18444052 (+)
G151084 NA non-coding downstream 9107 18955049 ~ 18997932 (+)
G151134 NA non-coding downstream 163901 19109843 ~ 19110973 (+)
G151395 NA non-coding downstream 280707 19226649 ~ 19227893 (+)
G151417 NA non-coding downstream 372044 19317986 ~ 19393161 (+)
G151419 NA non-coding downstream 447932 19393874 ~ 19397489 (+)
nfat5a LOC108274760,LOC108428435 other upstream 149016 18747827 ~ 18796259 (+)
urahb LOC108274538 other upstream 220589 18721595 ~ 18724686 (+)
rfwd3 rfwd3,LOC107754982 other upstream 261847 18675010 ~ 18683428 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 761242 18182554 ~ 18184033 (+)
G150589 LOC108274445 other upstream 1102740 17834237 ~ 17842535 (+)
faap24 faap24 other downstream 175209 19121151 ~ 19125201 (+)
G151401 NA other downstream 314682 19260624 ~ 19263893 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other downstream 377389 19323331 ~ 19384904 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other downstream 715901 19661843 ~ 19748080 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 3106672 22052614 ~ 22058158 (+)

Expression


Co-expression Network