XLOC_005249 (acbd4)


Basic Information

Item Value
gene id XLOC_005249
gene name acbd4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 15568761 ~ 15620090 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010095
GGATCGGTCGctataacgttaacgttactgtttttattttagtttgtccaATGGCAGCAAAAGTACCGTTACAGTGCAGgTTGTCCAGTTAATTAACGTGGTGTTGGAAAGACTACATGCGGCATGCCAGCTCTTACAATGTCAGAGATCGAGGACTGCCAAAGACGCTTTCAGGCTGCTGTCGACGTCATTCAAAGTCTACCTAAAAATGGTACCTACAAACCATCTTATGAAGTAATGCTGCGGTTTTATGGCCTGTTCAAACAGGCAGTCTGTGGCCCATGTACACTGTCACGCCCTGGATTTTGGGACCCTGTAGGACGTTACAAATGggAAGCTTGGAGTAATCTGGGAGAAATGAGTCGAGAGACGGCCATGGCTGCTTATGTGGATGAAATGAAAAAAGTTGCACAAGATGTCATTGACACCATGCAAATCAATGAAAAGAATGCATCCTATTTCCACTATTTTGAACCTCTTTACCATGTCATTCATGATATGCCCAGACCTCCAGAGGCACTTTTTTCTCTTAGTTCAGatgttaATGTGAAAGAACCAACTGGTGATGTGTTTAAACATAATGTGGATAGTGCAACTCAAGAACCAAGACTTCAACAGGATACAGAAACTTCCCTTAACAGTGAACTTCAACCTCAGAGCACAGAGCAACGTATGTCAGAGTGTCAGGGGCCGATTAGTGACACAGAGAGTGAAGTCTTCTGTGACTCGTTGGAACAGATGGATAATATAAAGCTGACTGCAGTACCAGATGGTAATAGTCCTTTCCAGAATGGTCGTACATGCATCGAGATCTCTGGTATCCAGGAGAGTCATTACAGTGCTCCATCACAGTTGGTTCAGATAGGAGTTGGACATGGTGAGGGGGCAGAAGACAGACATGATCCTCCTATGAGGATGACGACCGCAGGAAGAGAATGGTTGCAGCAGAACTGGAGGGACTCCCCAGGTTTCATGGCTCACCACAGTGCTGGACGGCTATCAGCAGCTGGCTCAGGGCAAGGGGACAGAGACAATTCTAAAAGTGGGTCTGGCCGGTTACAACAGCAGATTTTTCTAGCCCTACGGAAACTCCGAGAGGACATGCAAAGTGTCATGGAACGACTAGATGTGGTTGAAAGTCTTGCAACTGCAAATgCTCAGAATTCACATTGGATATCACATTTACAACGGACAGCTGGAGAGTCTGAGGAGAAATGGTGGCCATTTGAAATCTCTGGACGCACATTGATGCTGTTGTTGGTGTGGCCTTTTGTGACACAGTGGCTGAGTTTTCTCCTGAGATGGAAGAAGAGACAAATTCATGGGTGCAtatgaatttaataaatagtCAAGCTACAAGGATCACATATTTAATTGCCACTTCTCAGTCTCAGGTAAAAGAAGAAATGTTCTAAAATCCTATGTTCGAAATTAgatcacttaattttttatgaacaagTTGATGAACCAAGTTTAGGTCCTAGCATTGATTGTGAATATTTCAACGTGTTCCATTTATTTTTGGATAAAAATGGTTGTTTGTAATCATTTGTCTAAAAAATGTATGATATCCATACTATTGTGTTTTCAATAtaagtttactgtaaattttaa
>TCONS_00010096
CCTTTTTGCGTAAGACAACAGCACACAGTTCTCAAATTTATTGTGCAAGCAGAGCAGGCACCGTTTTTATAAACTGTTCCATATCGGATCGGTCGctataacgttaacgttactgtttttattttagtttgtccaATGGCAGCAAAAGTACCGTTACAGTGCAGgTTGTCCAGTTAATTAACGTGGTGTTGGAAAGACTACATGCGGCATGCCAGCTCTTACAATGTCAGAGATCGAGGACTGCCAAAGACGCTTTCAGGCTGCTGTCGACGTCATTCAAAGTCTACCTAAAAATGGTACCTACAAACCATCTTATGAAGTAATGCTGCGGTTTTATGGCCTGTTCAAACAGGCAGTCTGTGGCCCATGTACACTGTCACGCCCTGGATTTTGGGACCCTGTAGGACGTTACAAATGggAAGCTTGGAGTAATCTGGGAGAAATGAGTCGAGAGACGGCCATGGCTGCTTATGTGGATGAAATGAAAAAAGTTGCACAAGATGTCATTGACACCATGCAAATCAATGAAAAGAATGCATCCTATTTCCACTATTTTGAACCTCTTTACCATGTCATTCATGATATGCCCAGACCTCCAGAGGCACTTTTTTCTCTTAGTTCAGatgttaATGTGAAAGAACCAACTGGTGATGTGTTTAAACATAATGTGGATAGTGCAACTCAAGAACCAAGACTTCAACAGGATACAGAAACTTCCCTTAACAGTGAACTTCAACCTCAGAGCACAGAGCAACGTATGTCAGAGTGTCAGGGGCCGATTAGTGACACAGAGAGTGAAGTCTTCTGTGACTCGTTGGAACAGATGGATAATATAAAGCTGACTGCAGTACCAGATGGTAATAGTCCTTTCCAGAATGGTCGTACATGCATCGAGATCTCTGGTATCCAGGAGAGTCATTACAGTGCTCCATCACAGTTGGTTCAGATAGGAGTTGGACATGGTGAGGGGGCAGAAGACAGACATGATCCTCCTATGAGGATGACGACCGCAGGAAGAGAATGGTTGCAGCAGAACTGGAGGGACTCCCCAGGTTTCATGGCTCACCACAGTGCTGGACGGCTATCAGCAGCTGGCTCAGGGCAAGGGGACAGAGACAATTCTAAAAGTGGGTCTGGCCGGTTACAACAGCAGATTTTTCTAGCCCTACGGAAACTCCGAGAGGACATGCAAAGTGTCATGGAACGACTAGATGTGGTTGAAAGTCTTGCAACTGCAAATgCTCAGAATTCACATTGGATATCACATTTACAACGGACAGCTGGAGAGTCTGAGGAGAAATGGTGGCCATTTGAAATCTCTGGACGCACATTGATGCTGTTGTTGGTGTGGCCTTTTGTGACACAGTGGCTGAGTTTTCTCCTGAGATGGAAGAAGAGACAAATTCATGGGTGCAtatgaatttaataaatagtCAAGCTACAAGGATCACATATTTAATTGCCACTTCTCAGTCTCAGGTAAAAGAAGAAATGTTCTAAAATCCTATGTTCGAAATTAgatcacttaattttttatgaacaagTTGATGAACCAAGTTTAGGTCCTAGCATTGATTGTGAATATTTCAACGTGTTCCATTTATTTTTGGATAAAAATGGTTGTTTGTAATCATTTGTCTAAAAAATGTATGATATCCATACTATTGTGTTTTCAATAtaagtttactgtaaatttt
>TCONS_00010097
AGCGCGGCTGGCTTGACTGTGTTTTTCCGAACCGCGGCTGGCTTGACCGCAGTGGATCGGTCGctataacgttaacgttactgtttttattttagtttgtccaATGGCAGCAAAAGTACCGTTACAGTGCAGgTTGTCCAGTTAATTAACGTGGTGTTGGAAAGACTACATGCGGCATGCCAGCTCTTACAATGTCAGAGATCGAGGACTGCCAAAGACGCTTTCAGGCTGCTGTCGACGTCATTCAAAGTCTACCTAAAAATGGCAGTCTGTGGCCCATGTACACTGTCACGCCCTGGATTTTGGGACCCTGTAGGACGTTACAAATGggAAGCTTGGAGTAATCTGGGAGAAATGAGTCGAGAGACGGCCATGGCTGCTTATGTGGATGAAATGAAAAAAGTTGCACAAGATGTCATTGACACCATGCAAATCAATGAAAAGAATGCATCCTATTTCCACTATTTTGAACCTCTTTACCATGTCATTCATGATATGCCCAGACCTCCAGAGGCACTTTTTTCTCTTAGTTCAGatgttaATGTGAAAGAACCAACTGGTGATGTGTTTAAACATAATGTGGATAGTGCAACTCAAGAACCAAGACTTCAACAGGATACAGAAACTTCCCTTAACAGTGAACTTCAACCTCAGAGCACAGAGCAACGTATGTCAGAGTGTCAGGGGCCGATTAGTGACACAGAGAGTGAAGTCTTCT

Function

symbol description
acbd4 Predicted to enable fatty-acyl-CoA binding activity. Is expressed in myoseptum and myotome. Orthologous to human ACBD4 (acyl-CoA binding domain containing 4).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0000062 fatty-acyl-CoA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2074 Predicted to enable fatty-acyl-CoA binding activity. Is expressed in myoseptum and myotome. Orthologous to human ACBD4 (acyl-CoA binding domain containing 4).

Ensembl:

ensembl_id ENSDARG00000027070

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010095 False 1614 mRNA 0.42 11 15568761 15584479
TCONS_00010096 False 1697 mRNA 0.42 12 15568763 15620090
TCONS_00010097 True 718 nonsense_mediated_decay 0.45 7 15581320 15584532

Neighbor

gene id symbol gene type direction distance location
XLOC_005248 hexim1 coding downstream 1657 15565344 ~ 15567104 (-)
XLOC_005247 NA coding downstream 118503 15445574 ~ 15450258 (-)
XLOC_005246 NA coding downstream 324761 15242567 ~ 15244000 (-)
XLOC_005245 sult1st6 coding downstream 363674 15197857 ~ 15205087 (-)
XLOC_005244 NA coding downstream 442712 15125409 ~ 15126049 (-)
XLOC_005250 NA coding upstream 237642 15857732 ~ 15859869 (-)
XLOC_005251 kcnj19b coding upstream 442470 16062560 ~ 16084835 (-)
XLOC_005252 hectd2 coding upstream 712326 16332416 ~ 16380961 (-)
XLOC_005253 pcgf5b coding upstream 785508 16405598 ~ 16435150 (-)
XLOC_005254 rpp30 coding upstream 826138 16446228 ~ 16452200 (-)
XLOC_005243 NA non-coding downstream 448648 15117887 ~ 15120113 (-)
XLOC_005240 NA non-coding downstream 728202 14839787 ~ 14840559 (-)
XLOC_005255 CABZ01044816.1 non-coding upstream 873262 16493352 ~ 16493468 (-)
XLOC_005258 FO704724.2 non-coding upstream 952105 16572195 ~ 16572309 (-)
XLOC_005260 BX465840.1 non-coding upstream 978653 16598743 ~ 16598857 (-)
XLOC_005263 BX465840.2 non-coding upstream 1034591 16654681 ~ 16654795 (-)

Expression


Co-expression Network