G151395



Basic Information


Item Value
gene id G151395
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19226649 ~ 19227893 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU179305
TGATGAGTTGCTGCACTTTTATCAATTACACACgcatgaatgaatattttgtgaaaccTAGTCGTTTCATATTACAGGCAttgactaaataaatattaaatataaaaaaaaatcaagaatacataaatccataaattaagacaaataagaccatTCGTCcttttcatgtcaaaccattttgttttctcctcatttaattcacatctaattcacattttctgtagtttttgcatcagattttggccttttcaaTGGGTTGTTACACTtaaataatatgcatttttataaaatatatttttttcaataaaaattatatttttattggcttAGGCAGAAGTCAAATAACTTTCACTTGTATCCCTGAGaaagtctatttttatttttattcagcattGCAGTGCTTTATGGGCaaaaccaaatgcaaatcagctgtgccgtgTACACGCATGGTAATTATGAGTGactggcattcatcaacatttGCACGTGAGGAAAATCAGCGAATTTCTAAAACTTTTGCAAAAATTTCCTGCTGGAGGTTTTTAGTTTAATTTGGCTttagcaaacatttacacacaactttactaaaagattgataaatgaggcccattgtgtgcatggtgctggtgattgttttgatttttttgtatttgctcTCAGATTCACATTTGAAGTCAAAGATTTCATCGTTGAATTGCTTGTTGGCTCAAATGGTTAAATAAATTTAgctcaaatatactgtatatcaatcAGTCATTTCCAAATAcatgtgtaattatttttcaaagctttgttttttgtttttaaatagtcAACAAGAAGTGTACTATCATATATGTCTTGTCATTAATGCTGAAATGACTAAGATATATCCCAAACTAGGCTGTGAAGATTATCTCAGCTGAATGTCCTGGGGTCCTTTCCAGTAAACAGGATTTCCAAGTTATCTCGATAACACAAGTCAAGATTCATGAAAATctaggtttttttctttccaactTTCCAAATAGTAGGATGCATGGTATGTATAGCAGAGTTATGTccaacctatatatatatatgtatgtatgtatgtatgtttaatCAATGCCATAAATGTTCTGCCATTTTACTGAATCTGATCTGTTACAGAGATTCAATTGACTGTAGCAATTTATTCCCtaaaagtattattaaataCTAATATGATGATCTAAAAC

Function


GO:

id name namespace
GO:0033218 amide binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU179305 True 1199 lncRNA 0.31 2 19226649 19227893

Neighbor


gene id symbol gene type direction distance location
prnprs3 NA coding upstream 233 19221929 ~ 19226416 (+)
incenp incenp,LOC107701072 coding upstream 10302 19204494 ~ 19216347 (+)
ccdc77 ccdc77,LOC107754361 coding upstream 51545 19167269 ~ 19175104 (+)
LOC113529841 LOC108274949,LOC108428426 coding upstream 64501 19154291 ~ 19162148 (+)
zgc:153293 LOC108274949 coding upstream 72531 19149067 ~ 19154118 (+)
LOC113530162 LOC108274540,LOC103046250,LOC108428357 coding downstream 9779 19237672 ~ 19240638 (+)
thoc5 thoc5 coding downstream 41801 19269694 ~ 19280582 (+)
chid1 chid1,LOC107674841 coding downstream 57892 19285785 ~ 19292110 (+)
mov10l1 mov10l1 coding downstream 203533 19431426 ~ 19446347 (+)
szl LOC108274651,LOC108428364 coding downstream 221650 19449543 ~ 19451833 (+)
G151134 NA non-coding upstream 115676 19109843 ~ 19110973 (+)
G151084 NA non-coding upstream 228717 18955049 ~ 18997932 (+)
G151093 NA non-coding upstream 280707 18945275 ~ 18945942 (+)
LOC113530068 NA non-coding upstream 605828 18601539 ~ 18620821 (+)
G150958 NA non-coding upstream 674512 18551893 ~ 18552137 (+)
G151417 NA non-coding downstream 90093 19317986 ~ 19393161 (+)
G151419 NA non-coding downstream 165981 19393874 ~ 19397489 (+)
G151421 NA non-coding downstream 170385 19398278 ~ 19400388 (+)
G151445 LOC108274686,LOC108415052 non-coding downstream 175416 19403309 ~ 19403657 (+)
G151447 NA non-coding downstream 176079 19403972 ~ 19404398 (+)
faap24 faap24 other upstream 101448 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 430390 18747827 ~ 18796259 (+)
urahb LOC108274538 other upstream 501963 18721595 ~ 18724686 (+)
rfwd3 rfwd3,LOC107754982 other upstream 543221 18675010 ~ 18683428 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 1042616 18182554 ~ 18184033 (+)
G151401 NA other downstream 32731 19260624 ~ 19263893 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other downstream 95438 19323331 ~ 19384904 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other downstream 433950 19661843 ~ 19748080 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 2824721 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 2848956 22076849 ~ 22078496 (+)

Expression



Co-expression Network