G151419


Basic Information

Item Value
gene id G151419
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19393874 ~ 19397489 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU179341
AgagagatctttttttttattttacattaaaaaaggGTCCAAACTTGAGCTTCCCCTCTGGGTTGaaggaataaaaagtgtttatCGGTGCCTCTGAACAATGGCCATTACACAGAGaggctgcctgtctgtctgaaaACAAAACTTCCCAAAATCTCAAAAACTAATGGATTCTTCACAACTGGAGCCCTTTAGCACAGTTAAAGCATAAGGATAAAATTTGGAAATGACATtcaacattttaacacacaatattaataatacattttgggGGCCTGTTTTATCCAGACACACATTAAGCCCTGATGCCACTGTACATGAACAAAGCTCCTTGTTAGAAATCCTTAATAACAGCATTTAGTCCAAGACAAGGTCGAAatagtggagaaaaaaagtctgtgaaaaATCACCTTCCCTTAACTTTCATGTTAACTTtcctttgcttttatttatctgtgCAGGCTTGCTTCAAACCAGGGATAAAATAAAACCCAGCTCTGTAATAGACTTCATTTTCATCATGAGACCATcaaacaatgaaatattttacatattttacaacaAGACAGCTTCTGACTGATCTCAATGTGGTTTCATTAGTGGTTTCAGTTCCCTGTGGTTGGGAGATTAAACAAGGGAATGCGCCTCTCTCAAGctaaatcttttttaaacatttacttcaCTTTCCAGACttgtttcattaaaaagcattttctgaATAAGGCATAATGTGTGAACAGGGAACCAGACCATATGGTTTAAGACTGTAGCTTTGAGAAAGGATGATTACTTATAAGGAATGATCTCTCTAAACGTGCCCTTGTTTCTGTAGGGCATGTTTGTATGTGAGCACATTATCTCAATGCACTCAGGAATTAAACAAGTAAAAGTAAGCAAGCGTTGAATCTTTGACAAGACACAAATCATGATAGATGCGGATGGTGCTGGAACCAGTggtgcagaaagaaaaaacacgtTGAAATACAAGTGTCCCACAATGCCCCAGTGAACCagtgtttacatgactcaaaGCAGATACCGACTTGGGGGTACGAAGGCAAAGTTACAGTCACATTACTGTAATCCTTCTGCCCCACAAAAACTCAGAAATCAAATGTCAAATGTAAAGATAAAAAGCttccattaataataatataagctAAAACAAATTCTGAACATAACAGTGAATGATCAGTTTCAGTATCAACCATACATGACTAAAATAAACGCATACAATGGAAATCTGGTCCTACGTCACCTAGTCTAAGATTCATGATGATGTCCAGCTAATACAATGATTTCAACACCGGTTCAGTCAGTGTCCAAACAAAACAACTTAAGTCATAACTTAAATGATTATGCACAAATaatcattatacatatatatacacatatatattttttaccaTATATGGCTAATTTAGGAGAAAAGCACAGATCCAGTCATTCACCCCACCAGGAGGTGCCGTGGAGACCTTAGTGTTCTccgaataaatgaaataaaaatattcacaaatattcacaatcaataaaattacaaataaagtgaCCACATACACTCATATGCACTGTaaatgcacagaaacacaccaTAAAATTCCCATTTGAGGCATGGttcattaaatacaaaataaatgttcattttgtttaaaggcaaaatctgaaaaaagtTCACCATTTAGGCCGCAATTATTAATCcatattcaaaaacaaaaaccaaacataaaaaaagaaacagttacAGTACAAAAGTTCTGCAATAGAATTAATGCTATAAACAGGCAGCTGCTTGTTAGATTACACATGAAGAAACAATCACTCAAACAAAAGCTAGCTTGAGGACCAAAGCAGAAATAtaacacagttaaaaaaaagtagatgtATTAGTCCAGAACACGATGCATTTAAAAGAAAGGTTAATTTAACTTTCTCTTAAATGCTCAAGTATGTCAAGGTGCAAAGAACTTGAACACTGTTTACCTAATACCCAACATCTCTGGAGCATCTTGGGCATTAAGACAAATGCTCTTTACATCTAATGATgatatattcagtataattaTTTGCAGGTAAATCACATGTCATATTATGACAGGCTTGTAGTCCATCTCAGCATTCATACAGGATAGGACAGGAGCTAGTCCAATCCTCTAAAGTTATCTGTCTGATATTTTTTACCCAGgtataatcattttaatgatcTGGCTAGTGTGAATGCATCCCTGTACTCAAGGCATTACACACAATCATCTGCAGGGGACATGAGAGAAGAGACCCGGCAATATGAAAGAGCGATACCTTCCATCTTACCGCACGAACCCACATCAATATACATAAACCTACTGTAATCTGTTGGCCTCATATGTTTGTGGGAAAACAGTCTTCTATATCTTCCCTAATTTGAAAATATGACacacaaataagaaaaaaatggaaaaaaaatagtggtGATAGAGAATTCTAACCTTTAAGACTTTGGGAAAGGGTATTGCACATTCAAAGCTGAAAGTTTCTATATAACAGCACATAGCAAATGTGCTCTGCAAGCTGAAGCTAAAATGAGTGGTACTGATTTGCGCTTTCTCGTTTACACCCctgctgtaaatgtattaaGAGAAGCCATGGATTGGATCATGCAAACTACAATACGATTAAATACACAGTTCCATGAAATATGGCTTTTGGTTACCTAATCAAACATTTTACATGCCACAAATACCTTCAGGATAAATACTTCAATATAttgagtaattatttttttttttttagattttggtCTTAGGGGACAATCTTCTTTCGCAAGCCAGTCATCTATGCAAAACCCCTTTAGAGATTCATACACGTATACATACTGATGTATGTATTGCACTGTTACATGCAATAATATTTGTCTCCAGTGTAACATTCATTTCATTGTGACTGTTATGGTCTTGTGGAGTTTTGAACTTTGAATTAAATGAGTTATTTTGTCACGACATAGTGCTTATGCGTTTATGGGTGTAAGTAAGGCAGGATGCATACAGTAAATGGACATATATATTCAAAATGCACAGAATCTGTAGAAGAAAACCGAAGCGAAGTGGAAGTAATCTGTGCTACTGAGTCCAGGTACCACCAGGTGATGAATTCCTCTCTGTCCAAGAACATGGGGAAAACcagacaaaaggaaaaaaaaataaaacaataaacaggCCAAGCACAAGAGCAAGAAAGGTCATTGAAATGGTTGAACATTTGGGAAAAGTTAAATGTCCATAGCAAAATACAACCCTTTAGGAAGAAATGCAGCATGACTGTCCTATATTGACTGGCTCTTCATAGGGACAGACATCcgtaaaaacattaaaatatataaataaaggagTATCAGGATGAAAAGGCAAATTAAAAGAGTGCAAAGGGGAGACAGTCCTGTCCATTTGTCTCTGGACTGTTAAGAAGCTTAACATTCTTGCAGGGccactgtatgtactgtatgtactggCCTTGTAAATTTCCAGCTGTAAATGCGTCTCCATGGAGAGGCTCACATCAGCAGTACAGTGAAAATAAGGAGAGGAATATTTTGGCTCATTTGTGCCTTGGGGAACTCTTCTTCCTTTTACGCTTGAAGAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179341 True 3616 lncRNA 0.36 1 19393874 19397489

Neighbor

gene id symbol gene type direction distance location
chid1 chid1,LOC107674841 coding upstream 101764 19285785 ~ 19292110 (+)
thoc5 thoc5 coding upstream 113292 19269694 ~ 19280582 (+)
LOC113530162 LOC108274540,LOC103046250,LOC108428357 coding upstream 153236 19237672 ~ 19240638 (+)
prnprs3 NA coding upstream 167458 19221929 ~ 19226416 (+)
incenp incenp,LOC107701072 coding upstream 177527 19204494 ~ 19216347 (+)
mov10l1 mov10l1 coding downstream 33937 19431426 ~ 19446347 (+)
szl LOC108274651,LOC108428364 coding downstream 52054 19449543 ~ 19451833 (+)
dbx2 dbx2 coding downstream 59260 19456749 ~ 19464228 (+)
nell2a nell2,LOC108428412,LOC107661281,LOC100380741 coding downstream 78029 19475518 ~ 19542669 (+)
LOC113529538 LOC108275145 coding downstream 195012 19592501 ~ 19595962 (+)
G151417 NA non-coding upstream 713 19317986 ~ 19393161 (+)
G151395 NA non-coding upstream 165981 19226649 ~ 19227893 (+)
G151134 NA non-coding upstream 282901 19109843 ~ 19110973 (+)
G151084 NA non-coding upstream 395942 18955049 ~ 18997932 (+)
G151093 NA non-coding upstream 447932 18945275 ~ 18945942 (+)
G151421 NA non-coding downstream 789 19398278 ~ 19400388 (+)
G151445 LOC108274686,LOC108415052 non-coding downstream 5820 19403309 ~ 19403657 (+)
G151447 NA non-coding downstream 6483 19403972 ~ 19404398 (+)
G151446 NA non-coding downstream 9117 19406606 ~ 19407326 (+)
G151448 NA non-coding downstream 14112 19411601 ~ 19412033 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other upstream 8970 19323331 ~ 19384904 (+)
G151401 NA other upstream 129981 19260624 ~ 19263893 (+)
faap24 faap24 other upstream 268673 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 597615 18747827 ~ 18796259 (+)
urahb LOC108274538 other upstream 669188 18721595 ~ 18724686 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other downstream 264354 19661843 ~ 19748080 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 2655125 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 2679360 22076849 ~ 22078496 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other downstream 2818786 22216275 ~ 22266382 (+)
syt7a syt7,LOC108432693,LOC107655153,LOC107754343,LOC107551433 other downstream 2933274 22330763 ~ 22446147 (+)

Expression


Co-expression Network