G151421


Basic Information

Item Value
gene id G151421
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19398278 ~ 19400388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU179343
TCCACTTCTGCCTGCGTTGTTATTGGTGCGTTGGAATGGGCTACCAGAGGGTCGTCTGCATTCAGCTCCCCATTGGTTGAGCTGATCACCTGCAACACAGAATGTGTCCAATCAAAAATCAGTTCATGTCTATATGAAGGAAATTTTTAAAGGCTGTGTCACCTTCTTTTCATAATTAGCTTTTTACTGTTAGCTGGAGACGCTGTGTAAACTTACCACCCACTGGAAAAGAAAGGACATTGttgctgtttctttctttctttcttttttttaatacaaggGTGAGTCAgaagaaaaccttttttttttggtaattctGTATATTCTTGATTGATAATAAGTGTCAAAAACATGTATCATTTGTCTACAACATCTCCATTTTGTCCAATCCAAGTGTTCCAGTACTtggattcctctagaaaaaaattcaattcaattctaatttatgtCGCCCTTTCAAGGTTTTCACTTGAGCCATTCTCGCAGTTAAAGGATTTTGGAACTTCTTTTTTCtgcagttttgttttggttGATTTGAGTTGGGCGGAACTATATTCAGTCTACTAAAGTACCAATCAGAATTTACCCCAACCACAGAAACTAGAAATTATCTGCCCACTCCAGATCTTTGTGCCTAAGTGATCATGAATATAACTGCATCTAGTTAGAATTTTAGATATACTACTTTAGTGACTCtagaaatatatacaaaatacaccAACGCTCCACTCAGTGACTCatgagtataaaaataaaagcaatgtgGAAGCTCTTTTCCATCACTAGCACTGTTCACACGTTATTTACGTTGCCAGGGAGACGTTGCTGTCAATCAGTatgctcactcacacacccatacatCTATGATTAGGCACAAAATAGGACTTTTTGTAGCTTTTGGctataataaaattatagttAGAGATATACACCATATAGccgaaagtatgtggacacctgaccatcaggtccatatgtggatcttcccaaactgttgcctcaaAGTTGTCTCtgtacactgtagcattacaatttcccttcactggaactaagaggcccaaacatgttcctgcatgacaatgctctagtgcacaaagtgaggtccatgaagtcATGGTTCATGGTGGAAGTGTGgaagagtggaagaactcaagtgccctgcacagaaccctgacctcgaccccactgaacacctttgggatgaactggaacgccgactgcaccaCAGACCTCCTTGCTTGAagtcagtgcctgacctcacgaATGCTCTtttagctgaatgaacacaaatccccacagccacactccagaatctagtagaaagccttcccaaaagagtggaggttattataacagcaaaggggagtaaatctggaatgagatgttcagcaaacacatattggtgtgaaggtcaggtgtcaacatacttttggccatatagggtACATGTCTTAAATCTACCACTGATAATTGCATATTAAATGACAGACCTTTTGTATCAAAACCAGATTGCCAGAGGCTTTAAAACTGCAGCAGCACTGCTGCTTCCTAAGATCACCTCAACAAGGACTGAGTATACATGAACcatatcattaaatataaacaaaaatgtcaacAAAAAGGAAAATTGAAATAGTCATAACTTTATGGATCAGTTAAAATACTTCTCAACTCAAATACCATGTTTATTAAATGGTTCAACTCCATTTGAATGGctgattctgattatatagTTTGGACAAATTAGCACTAAATTCCTATTTTTGTGACAGGTAGTGAGGTCACAAAATAGGCTCTATGGTCCTGAACCAATCGtgtctgatatgcaaattattagagaTGCCACACTCAGATATTTGAAGGCGGCCTTAGTTCAGCTTTTACAGGTTTGGCTACTGTTTAACAAATCAACACACAGATACTAAAATCCCATGGGCCTACCCGTGACAAGTGCAAGCTAGTTtattagcagttagctagctagtcacCTGTTTGATATAACAGATTGAAATAGACAGATATTCATAGTCACTGATCCTTGCATTCTGTATGAGGGTGCAGAGATGTTCCTAGAccaattttaatgatttacttGGCCTTAACAACATAtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179343 True 2111 lncRNA 0.39 1 19398278 19400388

Neighbor

gene id symbol gene type direction distance location
chid1 chid1,LOC107674841 coding upstream 106168 19285785 ~ 19292110 (+)
thoc5 thoc5 coding upstream 117696 19269694 ~ 19280582 (+)
LOC113530162 LOC108274540,LOC103046250,LOC108428357 coding upstream 157640 19237672 ~ 19240638 (+)
prnprs3 NA coding upstream 171862 19221929 ~ 19226416 (+)
incenp incenp,LOC107701072 coding upstream 181931 19204494 ~ 19216347 (+)
mov10l1 mov10l1 coding downstream 31038 19431426 ~ 19446347 (+)
szl LOC108274651,LOC108428364 coding downstream 49155 19449543 ~ 19451833 (+)
dbx2 dbx2 coding downstream 56361 19456749 ~ 19464228 (+)
nell2a nell2,LOC108428412,LOC107661281,LOC100380741 coding downstream 75130 19475518 ~ 19542669 (+)
LOC113529538 LOC108275145 coding downstream 192113 19592501 ~ 19595962 (+)
G151419 NA non-coding upstream 789 19393874 ~ 19397489 (+)
G151417 NA non-coding upstream 5117 19317986 ~ 19393161 (+)
G151395 NA non-coding upstream 170385 19226649 ~ 19227893 (+)
G151134 NA non-coding upstream 287305 19109843 ~ 19110973 (+)
G151084 NA non-coding upstream 400346 18955049 ~ 18997932 (+)
G151445 LOC108274686,LOC108415052 non-coding downstream 2921 19403309 ~ 19403657 (+)
G151447 NA non-coding downstream 3584 19403972 ~ 19404398 (+)
G151446 NA non-coding downstream 6218 19406606 ~ 19407326 (+)
G151448 NA non-coding downstream 11213 19411601 ~ 19412033 (+)
G151450 NA non-coding downstream 12847 19413235 ~ 19413452 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other upstream 13374 19323331 ~ 19384904 (+)
G151401 NA other upstream 134385 19260624 ~ 19263893 (+)
faap24 faap24 other upstream 273077 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 602019 18747827 ~ 18796259 (+)
urahb LOC108274538 other upstream 673592 18721595 ~ 18724686 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other downstream 261455 19661843 ~ 19748080 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 2652226 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 2676461 22076849 ~ 22078496 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other downstream 2815887 22216275 ~ 22266382 (+)
syt7a syt7,LOC108432693,LOC107655153,LOC107754343,LOC107551433 other downstream 2930375 22330763 ~ 22446147 (+)

Expression


Co-expression Network