gatd1 (pddc1,LOC102788149)


Basic Information

Item Value
gene id gatd1
gene name pddc1,LOC102788149
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19292209 ~ 19295843 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU179457
atatatatatatatatatatatatatatataatcacaacATGTATGCTCGGGTTGTATCCTGAAAGCTTTTGTTACctgaataaatataatgtaaaatataatataaaactacatTATGAACTGCATGGTGTGTATGATGTGGATTGAAACAGGATTGAAAAATTTAAATGGCAGCGCCACCTGGTGGCTCCGCCCATAGCTCCGCCCCTTCAGCTACAACGTCCCCAGTGTTTCACACTTCATTTCCAGTACAACGTCCGCGTTTTAACAGTTCACTACAGCCTGCTGAACCTCCCACTAGGAACACTAAACGTGCCTGAAGTGTTATTGCGTCTCAGTTCGCCTACTATCCGTActaaatagtatccgagattaTATTTGGAATGTCCCAAATCatagtatgttgaaatgagtatccTAAAGGTACCCGGATGATGTACTATTTCCATTAGATTTTTGAAGTGTGGATCCATGGACActtttcagctaatattgcccACAACTCCTTGCGCGAGGGAGGAGAGGTTTTGTGActttagagaggtgtaaataaaatgtggaaaaataaatcaagggaatggtaaattaaattatatagtatCAATTATATAAGCactaatgaatgaagaaaaacaaatgctACGAGGAGTTTGTTTCCGGTGACAGt
>XM_026919813.2
TACctgaataaatataatgtaaaatataatataaaactacatTATGAACTGCATGGTGTGTATGATGTGGATTGAAACAGGATTGAAAAATTTAAATGGCAGCGCCACCTGGTGGCTCCGCCCATAGCTCCGCCCCTTCAGCTACAACGTCCCCAGTGTTTCACACTTCATTTCCAGTACAACGTCCGCGTTTTAACAGTTCACTACAGCCTGCTGAACCTCCCACTAGGAACACTAAACGTGCCTGAAGTGTTATTGCGTCTCAGTTCGCCTACTATCCGTActaaatagtatccgagattaTATTTGGAATGTCCCAAATCatagtatgttgaaatgagtatccTAAAGGTACCCGGATGATGTACTATTTCCATTAGATTTTTGAAGTGTGGATCCATGGACActtttcagctaatattgcccACAACTCCTTGCGCGAGGGAGGAGAGGTTTTGTGActttagagaggtgtaaataaaatgtggaaaaataaatcaagggaatggtaaattaaattatatagtatCAATTATATAAGCactaatgaatgaagaaaaacaaatgctACGAGGAGTTTGTTTCCGGTGACAGtgtgcgtaactaggcaacaacgttCTCTTCCGTTACATCATGACGTGTTAGttagtatgtcccagtacttgcaTACTCTTTCGTATGTATAAGTACATGCTCAGAAGTATTTATCTTTTCTTTacaaaaagagtacatacttCTAGTGCATAGTAGTGCATAAGTAGTCGAATTGAGACGCCGGGTATGTAAGCGGAACTACAGCTATGAGACTCCAGTTTCGAGACGGAGCGTTTCGTGGGCGGAACTAGCCTTACAACTGTGTAATAATCTGTATTATGTATAAATCTATGAATAAAGGTGGCTGCAACAGACAGCTTTTCTTTCTAATCGCGTATCTTGCTTGATTTTCGCTTTGTTAATGTACTTTATAGACTGTTCTCACTGCTGTTAGCTCTTGAGAAGTCGTTAGCTAGCGAGGTTTTTACAGCAGTGTGGACTGTGAGCTGagtataaacaataaaatgacatCCAAACCCACATGCCTTATTGTGGCCAGTGCAACGCCTCAAGGGGTGTCGGCCCGGTCTTTCcagcagtgtttctctctctgtagtcCTGTGTTTAACCTGCAGACAGCTACACCAGGGGGGAAAACTATTGACTTCGTCGGGATTGATGAAAGCTCTGCTCGATGGGTTCAGGATTTCAGTGTTAAACCATATGCCACTCCTGCCAAACTGGAGTCTATTGATGGTGCCCGCTACCAGGCTCTCCTGATCCCAGACTGCCCAGGAGCTCTGAAGGACCTTGCTCACAGTGGCTCACTAGCACGCAtcctcacacacttcagctcTCAGAAGAAGCCTGTGTGTGCTGTGGGACAGGGTGTTTCTGCACTTTGCTGTGCCACAGAGGGACAGAAATGGATATTTAGTGGATATAGCCTGACTGGAcCCTCTGTGTTTGAGCTGGTGCGCTCTCCGGATTTTGCCAACCTTCCTCTGATTGTGGAAGACTTTGTGAAAGACAATGGCGGATCCTACACAGCCAGTCAAGAGGATGCGCTGCATGTGGTCCTGGACCGCCACCTAGTGACTGGTCAGAATGTTCAGTCTACCACAGCTGCAGTCAGCAACCTGATCCTGCTGTTTAACAGCAGGTAAAATCCCTCGCCTGTTCAGGTGTAAAGCATTGTTGACCAGTGACACTGGAATACTTCAGGGGAAAACCGATCACTTTAATATTCCTGGTCTTGAAAGCAATTTGTCTTAATATATACTCTTAAATTTATCTACACTGGATCTACTTAAAGATCCAGGAGACATCCTGAAGAATTTTAAATTCATACTTTGTGTAGTTCTGAAAGATTTGCAGACCTAAAGTTGCTAAAAAGCTATAAAAACCTATAGTCTGCCAATTACAGATTGACCAAAAGTTGCCTGAAAAATTACCTCAACACAATGCAGTGTTAAATTTGAGTTGCCTAGTAATTGGTGCCAATTTGTACATTTAGCAGCTGTAGCCTGGTGTCAGTATGAAGCAGTATAAATTACAGTACACATTATTATTGAactattattttgtatattttttgcagtatttCACCAGTATCACAtaggaatatacagtatgtatgtgaTAGTGGTGAATTATCAATCCCTTGGCCTTAAAAtatgattgtttttcttttgatcTATTGGGAGGTAATGCATGTGTTTGCCTCAAGTATGAAGAAATGACTGTGTTTCTCACAGGAAGTCGTGAGCTTCCTGTAAATCATTGGTAAAAGTATAAATAACTCTCCTAGATTCCATTAAATAATCTCAGATAACATTAAATAACCTAACTAAGTGTTGGCATTGATAGTGCCATGTGGTAAAAGAAGTGTTGATGCATAGAGAAGAGTAAAGTTAATGTCCTTTCCATTAAAGCTCTTATCAGCATGTTTCTGTGAATGTCACTGATAGTGTTGATGTGAATAGATGAAGACTGCTACTCCACATGGTATCTAATTTTCTGAGCCCAAaacctgtatctgtgtgattgCGTCCTGCCTTTAGTTGAAATAGTCACAAAGATGTGATTACTGAACTTGCACCAATTACAGTATTGTATATATGCCTATGATTAAAGAATGCTAATAAAGCA

Function

NR:

description
Parkinson disease 7 domain-containing protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179457 False 668 lncRNA 0.37 1 19295176 19295843
XM_026919813.2 True 2685 mRNA 0.41 7 19292209 19295770

Neighbor

gene id symbol gene type direction distance location
zgc:158398 LOC108275006 coding downstream 24716 19261686 ~ 19267493 (-)
morc2 morc2,LOC107674835 coding downstream 32135 19241160 ~ 19260074 (-)
si:ch211-272n13.3 ankrd26,LOC108428422 coding downstream 87885 19175351 ~ 19204324 (-)
hdhd5 LOC108274948,LOC108428424,LOC107701071 coding downstream 125221 19162435 ~ 19166988 (-)
LOC113529515 LOC108274430,LOC108428427,LOC108432371,LOC102290823,LOC105941050,LOC101483816,LOC107548953,LOC103139941 coding downstream 144739 19144097 ~ 19147470 (-)
cd151 cd151,LOC108410837,LOC103041246,LOC107655143,LOC107561168,LOC107674842 coding upstream 630 19296473 ~ 19305314 (-)
pus7 pus7 coding upstream 12104 19307947 ~ 19321824 (-)
LOC113529648 csnk1g1,LOC108274686,LOC108415052,LOC107559435,LOC107738908,LOC107594477,LOC107686826 coding upstream 98020 19393863 ~ 19424183 (-)
pclaf kiaa0101,LOC102789275 coding upstream 129364 19425207 ~ 19426913 (-)
tmem117 tmem117,LOC107741828 coding upstream 261042 19556885 ~ 19609854 (-)
G151484 NA non-coding downstream 71866 19220016 ~ 19220343 (-)
G151351 NA non-coding downstream 164971 19126114 ~ 19127238 (-)
G151329 NA non-coding downstream 288642 19003281 ~ 19003567 (-)
G151171 NA non-coding downstream 509797 18704350 ~ 18782412 (-)
G151181 ciapin1 non-coding downstream 534694 18754744 ~ 18757515 (-)
G151740 NA non-coding upstream 436308 19732151 ~ 19735864 (-)
LOC117598099 NA non-coding upstream 462516 19758359 ~ 19781393 (-)
G151759 NA non-coding upstream 479031 19774874 ~ 19831107 (-)
G151757 NA non-coding upstream 511427 19807270 ~ 19809067 (-)
G151761 NA non-coding upstream 538559 19834402 ~ 19834869 (-)
G150991 LOC108436944 other downstream 863236 18425319 ~ 18428973 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other downstream 928173 18353974 ~ 18364036 (-)
etfbkmt etfbkmt other downstream 986880 18303142 ~ 18305329 (-)
LOC113530223 NA other downstream 987408 18304638 ~ 18304801 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 1077722 18204651 ~ 18214487 (-)
zgc:114188 rps17,rs17,LOC107389132,LOC103042467,LOC108428414 other upstream 83813 19379656 ~ 19392962 (-)
LOC113530226 NA other upstream 91398 19387241 ~ 19387366 (-)
LOC113530227 NA other upstream 91926 19387769 ~ 19387895 (-)
LOC113530225 NA other upstream 95913 19391756 ~ 19391882 (-)
trex3 LOC100304973 other upstream 1065629 20361472 ~ 20428729 (-)

Expression


Co-expression Network