zgc:114188 (rps17,rs17,LOC107389132,LOC103042467,LOC108428414)


Basic Information

Item Value
gene id zgc:114188
gene name rps17,rs17,LOC107389132,LOC103042467,LOC108428414
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19379656 ~ 19392962 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU179498
GCTCTTTCAGGCTCTCTTCGGCTAACCAGATCCAACATGGGCCGCGTCAGGACAAAGACGGTGAAGAAGGCCGCTCGGGTCATCATCGAGAAGTACTACACCCGCCTGGGCAATGACTTCCACACCAACAAGCGCGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAACTCCGCAACAAGATCGCTGGGTATGTGACCCATCTGATGAAGCGCATCCAGAGAGGGCCAGTCAGAGGCATCTCCATCAagctgcaggaggaggagcGTGAGAGGAGGGACAACTATGTCCCAGAGGTTTCTGCTCTGGACCAGGAGATCATTGAGGTGGACCCTGACACCAAGGAGATGCTCAAGCTTCTGGATTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAGCCCACGGTCGGCATGAACTTCAAGACTCCTCGAGGAGTCTAAGTGTTTGTAATATATCTCATAATAAAACTGTGGAAAACAAGGAACTTGAGTCTGTGTGTAATGGTTGATCTTGGCATTTGTGCTTTGTGGTctcaaaactgaaaactgaTGATAATGCACCACCACACGTCTCTGAAAGGGGACTTTTCCCCCCAAGTAATTCACTTCATTTATGTTTTAGTCCCAGGGCTTTTGCTTCAGCTAGTCTCATATTTATGACCAATGGTGGTTAAAATTAGGATAAATGGAAAGTTCCACTAGACTAATTTGTAGGAAGAGAGAATTACCGGTTCCTTGTGTATAGGATTCAGGCGTCTATGTTCTGCCTAACTTAAAGTTGCTGGGGTTTAAGAGTAACATCAGCATCCTGAAACTGAAGTTGGGCAAAACCTCTCTACATATTCAGAAGGAAGACTAATACAATACAGTGATTACCTCATATATACCATTACATCTTGATTAAAAGGTAATCCATTTTTAATCTGATAAATTTGcttgattaaattttttaactttttctgAACAGAAGGTCTAAGACACTGTTTATCTGGTGCAGATGTGTTTATAGTAGCCAGGAGTCCTAGTGGTGCCATATGGTGTTTATAGTGGAGGTCAGCTGGCCTTGTTATTACGTGGATGGATGTCGGTATGTCCTTATCCATGTAAGTGATGTTCCAGGTCACAGAGACACATTGTGTTGTCGGACATGGCCAGAAAAGTGCTGTATTGTCTGGCTTCATAATTCTCAGTGGATGTTGTTTGAGCCTCCCCTCCTGCACTCCTGTGATTTTAGACTGCAGCATGCATTAGCCCTTTCTGCAATGAGCTACGTTTAGTGGCTAGTTTACATCTGCAATATCTGCTGTTGCTGTGATACATTTTTTTGAAGCTCCATTTAATACATACACAGCATCATAACATGAAAGGTTTAAACTGAGAAATGCCTAGTGAGTGCTAATGATAACTGTATTACTGGTTAAGCTAGACCCTGGAGAAGACAGAGTGCTTTAAGTGTTGAAAagctgacagaaaaaaaatgagccattgatttataattttattaaatctgtCAATGAAAAACAGACAAGAGATGTAACCATGAATGTTGGGGAAGAACAGTCAGCATGGCTAAAGTGAGAGATCAGGAGCTTTTGGTGCAAAAATTCACTATTATTGCAAAAATGTTTGATCAAATTTGATCAGCATCACACTAGTCCATACAGAGCAGCACTGTTCACTCTAACGAAGGGGGAGAGagatgacaaaataaaaaaaaaaaacaaatggcaATAATAGTAATCATAATTATatcataattacaaaaaaaaattaaaacatctctaaacagacaaaacacaaTCACCTCAATAATAAGACGATATTCGGTCACCGTCACAACATCagaagttcttttttttttaaatattgtttttaaaaatacttcacCATCTActtatactttttttattgcGAAAATAGGTGATGACAGATGGAGCTGGAGGGTGGAAGAGGGCCGTTGGCACTGAGAGCGAGCTGTAGTGTGTGAAGGGTTGTGTGTcctcttctcacacacatactcacacactccagcaAGGAACTCCATTCAACGAGGCTCCTCCCGTTCTTAAGCTGTATTTCTGTTTCGCAGTGGAGTAGATGTCGGTTTGTAGAGCGATCTGTTGCGCTCTGTACACTGATCATAATCCCTGAACAAACGCAACGCAAGTGCAACCTCAGTCTTATGTTTTTTACACCTCAGACAGAACTGGACTGATTTGGGGCGGTCACCTTATGGTCACGTGATGGTGCTGCggaaaaaaataagtttatgttttataatgGTAGGAAGCATACATGTGTTAGAAACAGTTGTGGAATGCTTAAAGAGTAGGTGTTGACAGTACGTGGTTTCAACAAGAACCCTCGACATCGAGGCTTCGACCAGTTTTTCAAAAAGAGCAGAATGAAAGAAACGAATGAAGTAGAAGAATCTCAACACAAGTGAAATGCACTCTTTTTCTCACCCTCAGGTTCTCCATGCTTTCACTAGCTCAGAGAAATATCACAGAGAAATGAAAGGAGGCAGTCTGTAGAAGTCTCTTGGACCtcatattttgttcatttcacaCACTCTATGCCATAGACTGTTTATAATCCAGAGGGAacagtgtgtctctctgtgtttggaCTCTCCTGTGTGTCTGCAGGGGCCTGAACACTGGCATGCAGCTCTGATGGGAGGTGGTGGTAGATTTTGGGTCTGAGGGAGGGCTGTAAACAGTTCTGTGGCAGAACCTTGGCTCAGGGGGCTCTGTCTCTGTAAGGGGGGacagaggctgagagagagagagagacgtgagaGATAGTGGGCTACTTCCATCAGTAAAGATAATAGTAACACTGACATGCATACACCATAATCAGTTCCACCAGCTCACAGTGACAACGATGTCTGAGGTTCCTTAATGTGTTTGGAGCCAATTGGAGTTTGAACACTGGAGTATTGAGGCAAGCAAACACAGTTATTTTGAAGGTACTTCAAGGacatttgggctttttttttttttacttcaaatcTTAGCCCGAACTTTAAGGACACTGAGTTGGCTGTAACCTTTAATCTTCTTAATGTGTAAATCTGTTTAAtgcttattcattcattcacacattcatcttcagtaaccgctttatcctcgtcagggtcacggtggatacAGAGTCtctacactctggatgggatgcaaGACACACGTACACATCCATACACTTATTCAcgtctaggggcaatttatcatagccaatccacctactggtttgtgtgaggaaaccggagaacccggaatAAACCCATgcggacacagggagaacatggacCTTCACACAgtcagtaacccgagctcaggattgagccggggactctggagctgtgaggcggcaacgaTATCCACCGTGTCTCTTAATGCTTACTCTGATGGTAAATAGTTATACTCCATTGTTATTCCATTGCATATTTCTTCTTGTCATTTTATCAGGATACAAAACATCACTCTATTCATCCATCTGAAAATGGAATCTGAGTTAATgagcagcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaggtgcaACAGAGTGTATAGTGAATGCAGATTTCCACCTGTAGTGGCTCACTCCAACATGGTCCAGTCTTACAttagtccacacacacacacacactttccttccCCAATTCCCcaattctcattctctctctctgtctctctctcactcattcactgtctctctgacctctttttccccccagaCTGAGCGCAGGGTGCAGTCCTAAAGCCTGCCACTAGGGGGAAAGAGCTAGGAGTGGGAAGGTGCTACGAGTTTAGCCACGGATGATTGAGGCAGTCTCTTGCAGAGGCGCGTTTTTCTGGAACCATCTCCAGCATGGGCAACAGGAAGTTTGTGAAGTGGCCGGCGTCCTCGGCTGACCAGCCATACTTCTCCACCAGGACATCAAACAGAGACCACGGCTTTAGTTTAGTGATGTGCCGCAACTCACCTACAGAGGAAAGCAGAGAGAAAACTGGAGTTAGTACTGGGTGAAAAGATGCATTTATATCACCAGCCAAAGAGACTTCACTCATGATGAAATGGTGTCTTGAATAACAACgtctgttttgattttttgtGtgtgtgtgtgtgtaaaaaaaacaaacaaacatgaatagcGACCCAGTGGCCAATTTGCATGGCTTACTAGTGTGTCCCTAGAGGAACCTAGCATTGAAGTTTCGTGACAATAGGGCAATGTTAGCCATgttaaatgcctgctgaaatttGACTggtggcagccatgttttttaagtaatcagGTCATCATCAATGGTCCACTTGCAGATTAGCACAGAAATGTAATGTACCACATTTCAGCCCAATAGGACTTATGGTACCTGAGGAACCATTATTTGAACTTAGCCCTGCCCCCTATTTATGGCCGCTCCTGAAACTTTGCATGAACTCAGAATGTTGTCCTGTATGTACCTTTCAGGTTTCATAAGGAATCCATACAAACAATCATGAGTTAAAACTGTCTGAGTAAATCAGGCTCTGCCTCATAAGAGTTGATTGGCATATGacggccatattgtttataagCGTCAATATGTTTTTGGTAGTTTCTGAGGTTTCCACTACTGTGTGTAGTTTGACACCAATTTTGTGAAGATCCAAAAATCCAAATAGGTtctgcatattatgcaaattagctcaaATTCTAAGTGCGTGGAGCAAAATGGTTCTTGAGACTATTTCGCTCAGTGGAATCAGTGCTTTGTAGGACTTACAGTTCATGAGATATGGACCAAAACATAAAACCTTGTGCTATTATGCCACCATCAGGCCTATGTGGGTCCCTTTGTGTGCCTAAGTAGTGGGGGCCATACTGTATCTTTCCTTCAAATTTGGTGTTTCTATGTCTTACGGCCTTTGCTCTCTATACTGTTTAGCAGAgaattagaataataataataaaacaaatacaacagGGTTCCAGCACCTtctgtgcttggacccctaacaAGTCTTTCTGACCCAAACAGAACACCAGGGTTAATCAATAGGCAACAGCCTTCAGCACCATCATTGTTTGAACAAGGATTATGCAAAGCATCAGCATGATATCTAGATGTACATCTGTACAGCAATTACATGAGAAAATTTGCTATTGGTATCAGATTTGGAGATGTCAGTCATGAATATATCAGGCCTGTGCATCCTCATTACCACTCCGACTGGATGATGCATAATCTGTATGATGATGCATAAGTTTTTTGTTACGTTTATAGTTTCCAGTTGAAACTCTGGCCTTAATGCGGCTGGCTATTCAGGTGCATTTCCACAAGAGGAGTTGCGATTTGATTTAACGGGATGCAGAGTCAGGGATCCTCTCTCATTCCTGCTCCAGAGTAGCTACTATTCAGCTTCTCAGGAATTGCTGGAGTGGAGTGTACTGGTGTTTGGTTTGATGGTTGGTCAAATTCATAGAATGACCAGTCCTCTAACCTGGCATTTATAGAACCTGTATTATGTTAACAAGCAATTATTAAAACTCGAC
>XM_026919776.2
CCATGTCAGAAGGTGGCAGTGCCTCCCTGATAGTGTTTCCGGTCTGTGCTTTAAACTTCCGGTGGAGCTCTTTCAGGCTCTCTTCGGCTAACCAGATCCAACATGGGCCGCGTCAGGACAAAGACGGTGAAGAAGGCCGCTCGGGTCATCATCGAGAAGTACTACACCCGCCTGGGCAATGACTTCCACACCAACAAGCGCGTGTGTGAGGAGATCGCCATCATCCCCAGCAAGAAACTCCGCAACAAGATCGCTGGGTATGTGACCCATCTGATGAAGCGCATCCAGAGAGGGCCAGTCAGAGGCATCTCCATCAagctgcaggaggaggagcGTGAGAGGAGGGACAACTATGTCCCAGAGGTTTCTGCTCTGGACCAGGAGATCATTGAGGTGGACCCTGACACCAAGGAGATGCTCAAGCTTCTGGATTTCGGCAGTCTGTCCAACCTGCAGGTCACTCAGCCCACGGTCGGCATGAACTTCAAGACTCCTCGAGGAGTCTAAGTGTTTGTAATATATCTCATAATAAAACTGTGGAAAACAAGGAA

Function

symbol description
rps17 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; immature eye; and midbrain. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 4. Orthologous to human RPS17 (ribosomal protein S17).

NR:

description
40S ribosomal protein S17

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179498 True 5567 TUCP 0.43 7 19379656 19392896
XM_026919776.2 False 551 mRNA 0.53 5 19385921 19392962

Neighbor

gene id symbol gene type direction distance location
pus7 pus7 coding downstream 57832 19307947 ~ 19321824 (-)
cd151 cd151,LOC108410837,LOC103041246,LOC107655143,LOC107561168,LOC107674842 coding downstream 74342 19296473 ~ 19305314 (-)
zgc:158398 LOC108275006 coding downstream 112163 19261686 ~ 19267493 (-)
morc2 morc2,LOC107674835 coding downstream 119582 19241160 ~ 19260074 (-)
si:ch211-272n13.3 ankrd26,LOC108428422 coding downstream 175332 19175351 ~ 19204324 (-)
LOC113529648 csnk1g1,LOC108274686,LOC108415052,LOC107559435,LOC107738908,LOC107594477,LOC107686826 coding upstream 901 19393863 ~ 19424183 (-)
pclaf kiaa0101,LOC102789275 coding upstream 32245 19425207 ~ 19426913 (-)
tmem117 tmem117,LOC107741828 coding upstream 163923 19556885 ~ 19609854 (-)
irak4 irak4 coding upstream 229359 19622321 ~ 19631360 (-)
pdzrn4 pdzrn4,LOC106525479 coding upstream 525642 19918604 ~ 19967530 (-)
G151484 NA non-coding downstream 159313 19220016 ~ 19220343 (-)
G151351 NA non-coding downstream 252418 19126114 ~ 19127238 (-)
G151329 NA non-coding downstream 376089 19003281 ~ 19003567 (-)
G151171 NA non-coding downstream 597244 18704350 ~ 18782412 (-)
G151740 NA non-coding upstream 339189 19732151 ~ 19735864 (-)
LOC117598099 NA non-coding upstream 365397 19758359 ~ 19781393 (-)
G151759 NA non-coding upstream 381912 19774874 ~ 19831107 (-)
G151757 NA non-coding upstream 414308 19807270 ~ 19809067 (-)
G151761 NA non-coding upstream 441440 19834402 ~ 19834869 (-)
gatd1 pddc1,LOC102788149 other downstream 83813 19292209 ~ 19295843 (-)
G150991 LOC108436944 other downstream 950683 18425319 ~ 18428973 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other downstream 1015620 18353974 ~ 18364036 (-)
etfbkmt etfbkmt other downstream 1074327 18303142 ~ 18305329 (-)
LOC113530223 NA other downstream 1074855 18304638 ~ 18304801 (-)
trex3 LOC100304973 other upstream 968510 20361472 ~ 20428729 (-)
znf609a znf609,LOC108275264,LOC107745096,LOC107680896 other upstream 1127285 20520247 ~ 20622086 (-)
muc2.1 LOC108274764 other upstream 2346880 21739842 ~ 21770904 (-)
G152890 NA other upstream 2444246 21837208 ~ 21838766 (-)
deaf1 deaf1,LOC107726848,LOC107561139 other upstream 2803824 22196786 ~ 22215573 (-)

Expression


Co-expression Network