G151740


Basic Information

Item Value
gene id G151740
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19732151 ~ 19735864 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU179712
GAATTCACCGGAGCTGCGAAACAGACTTATGACAGTTATGACAGAGAGTGGACGGGTGTAAGGCAGTGAGCTCTCCTTCTGCATTCATCAAGCTCATCTGCAGCACATCAGTTAAGCTCATCAGCTAAGCAGAGATGGAAGCAAAGAGTTCTGATATGCTGCTAATGTGATCGATCGATCCACAATAAAGAAGAAAGGCAGAAAAAGGGAATCTCCATGGTCTACCTTTACAGAGAGACAAAACACTAAATTAGGAGCAGTCAACATGACAGTCTCTGGGTCCATGATAATGCAATGGGACACACTGCTACTAGAAAGCTGTTTAGGTTGTAATCTGATGATTGAGACAGATCGAAaaggtaagtgtgtgtaatctggtttatgatccctcttttaCACTCCTCAATGATTCACAGTGTAATACATAGAACTGGCTATAATCAACATGACAAATAAAGCAAGACACACTGCTACTACACTTGAATAAAGCACGAATCATTACTACCACATTTTACCATATCCAGCGAAATGCCTGTTGATTTTTCTTAGAGTTCATGATGTTGGTGTCTCAGGATGTGTTATAAAACAGCTTTCAATGCAAACCCTCATCAGCATCCCTTCACCATTTCTTTTGGGGTAATCCATATCAGTGTTTTAATGATCATTTCAATGCTTTTGCACAAAGATTATTAGATCAGCCGTTGGGGTTACAGGGGGATCAATTCATTAGGCATTAAAAAAGAGCTCTTtca

Function

GO:

id name namespace
GO:0021872 forebrain generation of neurons biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0021954 central nervous system neuron development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179712 True 752 lncRNA 0.40 3 19732151 19735864

Neighbor

gene id symbol gene type direction distance location
irak4 irak4 coding downstream 100791 19622321 ~ 19631360 (-)
tmem117 tmem117,LOC107741828 coding downstream 122297 19556885 ~ 19609854 (-)
pclaf kiaa0101,LOC102789275 coding downstream 305238 19425207 ~ 19426913 (-)
LOC113529648 csnk1g1,LOC108274686,LOC108415052,LOC107559435,LOC107738908,LOC107594477,LOC107686826 coding downstream 307968 19393863 ~ 19424183 (-)
pus7 pus7 coding downstream 410327 19307947 ~ 19321824 (-)
pdzrn4 pdzrn4,LOC106525479 coding upstream 182740 19918604 ~ 19967530 (-)
cntn1a cntn1,LOC108275444 coding upstream 304917 20040781 ~ 20110682 (-)
nrcama nrcam,LOC108428399 coding upstream 381505 20117369 ~ 20197334 (-)
pnpla8 pnpla8 coding upstream 469610 20205474 ~ 20227766 (-)
LOC113530073 LOC108275253 coding upstream 499689 20235553 ~ 20237511 (-)
G151484 NA non-coding downstream 511808 19220016 ~ 19220343 (-)
G151351 NA non-coding downstream 604913 19126114 ~ 19127238 (-)
G151329 NA non-coding downstream 728584 19003281 ~ 19003567 (-)
G151171 NA non-coding downstream 949739 18704350 ~ 18782412 (-)
G151181 ciapin1 non-coding downstream 974636 18754744 ~ 18757515 (-)
LOC117598099 NA non-coding upstream 22495 19758359 ~ 19781393 (-)
G151759 NA non-coding upstream 39010 19774874 ~ 19831107 (-)
G151757 NA non-coding upstream 71406 19807270 ~ 19809067 (-)
G151761 NA non-coding upstream 98538 19834402 ~ 19834869 (-)
LOC113530007 NA non-coding upstream 101189 19837053 ~ 19857546 (-)
zgc:114188 rps17,rs17,LOC107389132,LOC103042467,LOC108428414 other downstream 339189 19379656 ~ 19392962 (-)
LOC113530225 NA other downstream 340269 19391756 ~ 19391882 (-)
LOC113530227 NA other downstream 344256 19387769 ~ 19387895 (-)
LOC113530226 NA other downstream 344785 19387241 ~ 19387366 (-)
gatd1 pddc1,LOC102788149 other downstream 436308 19292209 ~ 19295843 (-)
trex3 LOC100304973 other upstream 625608 20361472 ~ 20428729 (-)
znf609a znf609,LOC108275264,LOC107745096,LOC107680896 other upstream 784383 20520247 ~ 20622086 (-)
muc2.1 LOC108274764 other upstream 2003978 21739842 ~ 21770904 (-)
G152890 NA other upstream 2101344 21837208 ~ 21838766 (-)
deaf1 deaf1,LOC107726848,LOC107561139 other upstream 2460922 22196786 ~ 22215573 (-)

Expression


Co-expression Network