G152391


Basic Information

Item Value
gene id G152391
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 21059032 ~ 21063059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU180504
ATCAAATCCATGTGTTTTGGACTGCAAATGGAAGCAGGTAGCTGCCGCTGGTGAGGATGAGGAAGATCTGAGGGTAGTAGACTGACAGCAGCACAGTGCGCGACGAGAACACGATCATGGTGACATTGAGCGAAGTGCCGCTTGCAGACCGACTGAAAGAAAGGCAATCTCCTGCTATCCTCTGGGTCGAGCGTTAAGCTGTCCGTCCTCAGTTTGGAGCAGCTTCGTGGAACAACGCGAGCTTTTTACGCGgcgcaacagcagcagcagcagcagcgagcgcGGAGAGCGAGTGTGTCATGTCTCCGCGGGCGAGGCTGTTACCATGTGGTTGCCAAACTGGAACGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180504 True 349 lncRNA 0.55 2 21059032 21063059

Neighbor

gene id symbol gene type direction distance location
fbln1 LOC108275342,LOC108429449 coding upstream 85017 20945895 ~ 20974015 (+)
ppm1h ppm1h,LOC108429443 coding upstream 189416 20856589 ~ 20869616 (+)
avpr1aa avpr1a,LOC108274444,LOC102782296,LOC100711102 coding upstream 220225 20832131 ~ 20838807 (+)
fem1b fem1b,LOC107738637,LOC107680899,LOC107575886 coding upstream 290661 20764762 ~ 20768371 (+)
rxfp3.3b LOC108274441 coding upstream 300096 20756540 ~ 20758936 (+)
pparab LOC108275118,LOC108429453,LOC107701195,LOC107549599,LOC107558597,LOC107668648 coding downstream 69277 21132336 ~ 21156921 (+)
yars2 yars2 coding downstream 103756 21166815 ~ 21176254 (+)
cdkn1bb cdkn1b coding downstream 113689 21176748 ~ 21181510 (+)
mrps35 mrps35 coding downstream 252200 21315259 ~ 21326387 (+)
adck2 adck2,LOC107669038 coding downstream 359140 21422199 ~ 21428343 (+)
G152380 wnt7bb,LOC108275429,LOC108429451,LOC107701192 non-coding upstream 13136 21045637 ~ 21045896 (+)
G152374 LOC108275429,LOC107728337,LOC108429451,LOC107549584 non-coding upstream 16698 21040754 ~ 21042334 (+)
G152365 NA non-coding upstream 57727 21001105 ~ 21001305 (+)
LOC117598074 NA non-coding upstream 74771 20981275 ~ 20984261 (+)
G152179 NA non-coding upstream 526535 20532193 ~ 20532497 (+)
G152404 NA non-coding downstream 59263 21122322 ~ 21122836 (+)
G152403 NA non-coding downstream 59870 21122929 ~ 21125295 (+)
G152736 NA non-coding downstream 561391 21624450 ~ 21624664 (+)
G152838 NA non-coding downstream 747852 21810911 ~ 21811599 (+)
G152984 LOC100304581 non-coding downstream 1094808 22157867 ~ 22158096 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other upstream 1310952 19661843 ~ 19748080 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other upstream 1674128 19323331 ~ 19384904 (+)
G151401 NA other upstream 1795139 19260624 ~ 19263893 (+)
faap24 faap24 other upstream 1933831 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 2262773 18747827 ~ 18796259 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 989555 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 1013790 22076849 ~ 22078496 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other downstream 1153216 22216275 ~ 22266382 (+)
syt7a syt7,LOC108432693,LOC107655153,LOC107754343,LOC107551433 other downstream 1267704 22330763 ~ 22446147 (+)
LOC113529801 LOC108274632,LOC108274583 other downstream 1536735 22599794 ~ 22623807 (+)

Expression


Co-expression Network