G152403


Basic Information

Item Value
gene id G152403
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 21122929 ~ 21125295 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU180519
GCAGCGATTCAACACCTAatcaccagcagggggcagcactCACCCTTCATCGTTTTCATCAATGTtgtcatgtgtatgtgtagcCCTTTAtagtgtgttgttgttgttgttgttgttgttgtttatataCCATGTGCATAATGTCATGCAAGAGTGAATGattttgtcttttggtgtttGTTTAAAGTGTGTCAGAATTATCATATAAGGAAAAACCTAAATAAATTAGTGGAGAAACATACCAAGTACCAAATGCTTCCAGAAAGGTGTACTGCATGATACAATTAAACCATTAACATCCTACCGTGCTCTGAGCAGACACAGTTGACCTCAGGTTTGGATCAAGATGACAAGAGGAAAAGATCTAAGCTACTTTGAAAGAGTGTTCATTATTGTGGCCCACTGATAGCAGGAGCTTCAGTCGCAAAGTCTGCTCAGCTGGCTGTGTTTCAATAGGAACAGTGATTAAAGTGACATCTGCAGCGATTAAAGTGACATCAAAATTTAGATCTATGGGAAATACAGTACACAGGGTTGTGAAATGAGGATGAAAGCACACATTCAATGCCTGTGATGCTTGTGCATTAGTGAAATatgtaaaaacagaaaagcaactGTTCTTCAGGTGACTGAGAATGTCAATGCAATAAGATCAGACTGTTAGCCAGAACTACAGCTACATAGAGAGAGATTATAGTAGGGACGCAGTGCATAAATCCCTAGTTACAATGAGGAATGCACATTTCTCGTTTACAGCGCAATCCACAGGAACTGTTTACAGCAATGTGGAAAAAAGTGATGTGTGTAGTATACACCAAGCGAACATTACAGTCCTGAAGAACTGAGTGGGTCCAGAGGTGCGGTTATATGCTGTGGAGGGCATTTTGCtagcatggtttgggtccacttgtcccctaagagggaagggtcactgcaaatcaatacagttattctgactgatcatctttttcctgtgatgaaacatttctttccTGATGCGAGtgctctcttccaggatgacagtgCTCTCAAAGACAGGCCAAGAAGGAacactgaatgatttgatgagTACAAAAATTATATACGTCATATGCTAcagccttcacagtcaccagatctcaaccatATTGAACACCTGTTGGAGGTTTTGGACTGACGTGTCAGGCAGCgctatcatcaaaacaccagttgaGGAACACCACCCATGTTCATACTGCTAACTGGTGGCTTTCATTACACTTTACAACTTGGTATTAGTCATTTAATGTGCTATTCACTAGACTAAGATTAACTGTAGGGAAAAAGGAGATAGAGATGTTTTGCGATGTTTAATAgtacatgcaaATGAGCCGAACTAGGTCTGGTTCTTTAATTATGACTAGTTTATCCACACTGTTGATAAGCACATGGTATATTAATACAGTAATGAAGTTCTACAAGGCTGTCATTGAAAGTATTATCATGTGTTTGTTGTTAGTGTTTGATTTGGGAGCTGTGAGGTCCAAATACACCCTGTAATATAATCATGTCTAGAAGtctagaagaaaaaaatgaaatgactattacaaaaaaattcctCTAGAAAGCTGTTGTGCCTGATGCAGCAGGTAGTTAAACCAGCCTcggtggtgtgtgtggggaatTAGAAATACAGGTTCAGCATTCAGCCGTTCACCCTAGTGAAACCAACAAGCAATCCTCAATCCTTGATGATCTGAGAGCAGTTTTATTCAAATTCAAGCTACTGTGATATACCCCATATGTGTGCTACCCATCTAACAGAAGTGGTTCTTTAAACATAAAAGTGTATAATTCTAAATTAGTATCAGCTTGAAGTTTCAGCATTATATCTAAATAGTTGTTTTGATGTTGTGTCTTGCTGCCTTATTGCCATGGGAGGAGCTCTAATGAAATGACACTGAGCTCTCACTCTCAGAACACCCTCAGATCACTACAGTGAATGAGAAATGGTGCCACCTGCTGTTTGGTACAATACAGCAACTTGGGCAGCCAAGTACAAGGGGATTCTGCCTAGTTCTAGGAAAGTATTGTTTCTGTGAAGTACACAGGGTTTCCTGTATCAGTGCATCTGTGTGGTCAGTGCAAAACGTTAATGAGTCAGATGGGGCAAAAAGGTGTGTGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106582599

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU180519 True 2143 lncRNA 0.40 3 21122929 21125295

Neighbor

gene id symbol gene type direction distance location
fbln1 LOC108275342,LOC108429449 coding upstream 148914 20945895 ~ 20974015 (+)
ppm1h ppm1h,LOC108429443 coding upstream 253313 20856589 ~ 20869616 (+)
avpr1aa avpr1a,LOC108274444,LOC102782296,LOC100711102 coding upstream 284122 20832131 ~ 20838807 (+)
fem1b fem1b,LOC107738637,LOC107680899,LOC107575886 coding upstream 354558 20764762 ~ 20768371 (+)
rxfp3.3b LOC108274441 coding upstream 363993 20756540 ~ 20758936 (+)
pparab LOC108275118,LOC108429453,LOC107701195,LOC107549599,LOC107558597,LOC107668648 coding downstream 7041 21132336 ~ 21156921 (+)
yars2 yars2 coding downstream 41520 21166815 ~ 21176254 (+)
cdkn1bb cdkn1b coding downstream 51453 21176748 ~ 21181510 (+)
mrps35 mrps35 coding downstream 189964 21315259 ~ 21326387 (+)
adck2 adck2,LOC107669038 coding downstream 296904 21422199 ~ 21428343 (+)
G152404 NA non-coding upstream 93 21122322 ~ 21122836 (+)
G152391 NA non-coding upstream 59870 21059032 ~ 21063059 (+)
G152380 wnt7bb,LOC108275429,LOC108429451,LOC107701192 non-coding upstream 77033 21045637 ~ 21045896 (+)
G152374 LOC108275429,LOC107728337,LOC108429451,LOC107549584 non-coding upstream 80595 21040754 ~ 21042334 (+)
G152365 NA non-coding upstream 121624 21001105 ~ 21001305 (+)
G152736 NA non-coding downstream 499155 21624450 ~ 21624664 (+)
G152838 NA non-coding downstream 685616 21810911 ~ 21811599 (+)
G152984 LOC100304581 non-coding downstream 1032572 22157867 ~ 22158096 (+)
G152985 NA non-coding downstream 1033137 22158432 ~ 22158654 (+)
G152987 NA non-coding downstream 1035363 22160658 ~ 22160872 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other upstream 1374849 19661843 ~ 19748080 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other upstream 1738025 19323331 ~ 19384904 (+)
G151401 NA other upstream 1859036 19260624 ~ 19263893 (+)
faap24 faap24 other upstream 1997728 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 2326670 18747827 ~ 18796259 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 927319 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 951554 22076849 ~ 22078496 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other downstream 1090980 22216275 ~ 22266382 (+)
syt7a syt7,LOC108432693,LOC107655153,LOC107754343,LOC107551433 other downstream 1205468 22330763 ~ 22446147 (+)
LOC113529801 LOC108274632,LOC108274583 other downstream 1474499 22599794 ~ 22623807 (+)

Expression


Co-expression Network