arpp19b (arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970)


Basic Information

Item Value
gene id arpp19b
gene name arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 22076849 ~ 22078496 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU181233
gTTCCTTTAATTCACATTCACAACAGCTAGCAGCAGAGCGGCATTGTGCTGGAGGTTGTGCAGGGAGACATCCACGCGCAGTTGATTAGCAAGCTCGTGATTATTCGCGCGTGTTTATCGAAATGTCCCGCGAGACCGAGCAGGCTGTGGAAGAAGTGAGTACAGAGGAGCAGCAGGAGATGCAGGATAAAGTTGTGAGTCCTGAGAAGGCAGAAGAAGCAAAGCTAAAGGCTAGATATCCTCATCTGGGCGCTAAGCCAGGAGGCTCAGACCTGCTGAGGAAAAGACTACAGAAAGGGCAAAAGTACTTTGACTCAGGAGATTACAATATGGCCAAGGCCAAAATGAAGAATAAACAGCTCCCGGCAGCGGCGACGGAGAAAACTGAGATCACAGGAGATCACATCCCGACTCCTCAGGATCTGCCACAGAGGAAGACCTCGCTGGTGGCCAGCAAACTGGCTGTTTGATATGAACTTTGCGAGGACTTTCCAGTTACCATTCCTGATATTTTGATCTCTGCTTTACCTCCattttactgtctctctctctgtctttctcttttttttttgttctttcctcTCTTGACTTTCTACTGCCTGTGTAATTGCTCtaaagaaatgctgttttgATCAAATGTTTGCTGCTGAGCACCCTCATTCTCCCATTCATGTGTGTAAACAAGACGTTTTGGCTGTAGTTCCAGTTTCTATTACGATGTAATTCCAGTTTCTACTCCCAGGTGTGAATGCAATGTTATCTGACTGAAACAATTGAACAGAgacctttcttctttttttttaggattttactagttttactcactcactcccttGCAATGATTCATGTGTGATTCTTACATTTACACTGGCCTTTAACGATAACCCTCTCACTTGTTATAATGATTTCCAGTAAGACgcagagggttttttttgacGTGTGCTGCTTACCTCCTGCGTGTGATTGGTGAAACTTGCCTTAATGATATCTGCCACAGTTTCTCTTGGGCAATATTTGCCCACTCTGAGAGCGAAGCTCTTCGGGGTTTAGCCACAAGCTTGTGCTGATGTGATTTTCCAGTTAGGTCTTCTGGTTGGGGCAGCTCACTCATATTCTTCAAACTGTGCACAAGCACTGACTGTCACA
>TU181234
gTTCCTTTAATTCACATTCACAACAGCTAGCAGCAGAGCGGCATTGTGCTGGAGGTTGTGCAGGGAGACATCCACGCGCAGTTGATTAGCAAGCTCGTGATTATTCGCGCGTGTTTATCGAAATGTCCCGCGAGACCGAGCAGGCTGTGGAAGAAGAGATGCAGGATAAAGTTGTGAGTCCTGAGAAGGCAGAAGAAGCAAAGCTAAAGGCTAGATATCCTCATCTGGGCGCTAAGCCAGGAGGCTCAGACCTGCTGAGGAAAAGACTACAGAAAGGGCAAAAGTACTTTGACTCAGGAGATTACAATATGGCCAAGGCCAAAATGAAGAATAAACAGCTCCCGGCAGCGGCGACGGAGAAAACTGAGATCACAGGAGATCACATCCCGACTCCTCAGGATCTGCCACAGAGGAAGACCTCGCTGGTGGCCAGCAAACTGGCTGTTTGATATGAACTTTGCGAGGACTTTCCAGTTACCATTCCTGATATTTTGATCTCTGCTTTACCTCCattttactgtctctctctctgtctttctcttttttttttgttctttcctcTCTTGACTTTCTACTGCCTGTGTAATTGCTCtaaagaaatgctgttttgATCAAATGTTTGCTGCTGAGCACCCTCATTCTCCCATTCATGTGTGTAAACAAGACGTTTTGGCTGTAGTTCCAGTTTCTATTACGATGTAATTCCAGTTTCTACTCCCAGGTGTGAATGCAATGTTATCTGACTGAAACAATTGAACAGAgacctttcttctttttttttaggattttactagttttactcactcactcccttGCAATGATTCATGTGTGATTCTTACATTTACACTGGCCTTTAACGATAACCCTCTCACTTGTTATAATGATTTCCAGTAAGACgcagagggttttttttgacGTGTGCTGCTTACCTCCTGCGTGTGATTGGTGAAACTTGCCTTAATGATATCTGCCACAGTTTCTCTTGGGCAATATTTGCCCACTCTGAGAGCGAAGCTCTTCGGGGTTTAGCCACAAGCTTGTGCTGATGTGATTTTCCAGTTAGGTCTTCTGGTTGGGGCAGCTCACTCATATTCTTCAAACTGTGCACAAGCACTGACTGTCACA
>XM_026919485.2
catccatccattcaggTTCCTTTAATTCACATTCACAACAGCTAGCAGCAGAGCGGCATTGTGCTGGAGGTTGTGCAGGGAGACATCCACGCGCAGTTGATTAGCAAGCTCGTGATTATTCGCGCGTGTTTATCGAAATGTCCCGCGAGACCGAGCAGGCTGTGGAAGAAGTGAGTACAGAGGAGCAGCAGGAGATGCAGGATAAAGTTGTGAGTCCTGAGAAGGCAGAAGAAGCAAAGCTAAAGGCTAGATATCCTCATCTGGGCGCTAAGCCAGGAGGCTCAGACCTGCTGAGGAAAAGACTACAGAAAGGGCAAAAGTACTTTGACTCAGGAGATTACAATATGGCCAAGGCCAAAATGAAGAATAAACAGCTCCCGGCAGCGGCGACGGAGAAAACTGAGATCACAGGAGATCACATCCCGACTCCTCAGGATCTGCCACAGAGGAAGACCTCGCTGGTGGCCAGCAAACTGGCTGTTTGATATGAACTTTGCGAGGACTTTCCAGTTACCATTCCTGATATTTTGATCTCTGCTTTACCTCCattttactgtctctctctctgtctttctcttttttttttgttctttcctcTCTTGACTTTCTACTGCCTGTGTAATTGCTCtaaagaaatgctgttttgATCAAATGTTTGCTGCTGAGCACCCTCATTCTCCCATTCATGTGTGTAAACAAGACGTTTTGGCTGTAGTTCCAGTTTCTATTACGATGTAATTCCAGTTTCTACTCCCAGGTGTGAATGCAATGTTATCTGACTGAAACAATTGAACAGAgacctttcttctttttttttaggattttactagttttactcactcactcccttGCAATGATTCATGTGTGATTCTTACATTTACACTGGCCTTTAACGATAACCCTCTCACTTGTTATAATGATTTCCAGTAAGACgcagagggttttttttgacGTGTGCTGCTTACCTCCTGCGTGTGATTGGTGAAACTTGCCTTAATGATATCTGCCACAGTTTCTCTTGGGCAATATTTGCCCACTCTGAGAGCGAAGCTCTTCGGGGTTTAGCCACAAGCTTGTGCTGATGTGATTTTCCAGTTAGGTCTTCTGGTTGGGGCAGCTCACTCATATTCTTCAAACTGTGCACAAGCACTGACTGTCACAACTGTGCCATTCGTTTTGTAAATAAACTAGTTTTGCACAAGAA
>XM_026919486.2
atccatccatccatccattcaggTTCCTTTAATTCACATTCACAACAGCTAGCAGCAGAGCGGCATTGTGCTGGAGGTTGTGCAGGGAGACATCCACGCGCAGTTGATTAGCAAGCTCGTGATTATTCGCGCGTGTTTATCGAAATGTCCCGCGAGACCGAGCAGGCTGTGGAAGAAGAGATGCAGGATAAAGTTGTGAGTCCTGAGAAGGCAGAAGAAGCAAAGCTAAAGGCTAGATATCCTCATCTGGGCGCTAAGCCAGGAGGCTCAGACCTGCTGAGGAAAAGACTACAGAAAGGGCAAAAGTACTTTGACTCAGGAGATTACAATATGGCCAAGGCCAAAATGAAGAATAAACAGCTCCCGGCAGCGGCGACGGAGAAAACTGAGATCACAGGAGATCACATCCCGACTCCTCAGGATCTGCCACAGAGGAAGACCTCGCTGGTGGCCAGCAAACTGGCTGTTTGATATGAACTTTGCGAGGACTTTCCAGTTACCATTCCTGATATTTTGATCTCTGCTTTACCTCCattttactgtctctctctctgtctttctcttttttttttgttctttcctcTCTTGACTTTCTACTGCCTGTGTAATTGCTCtaaagaaatgctgttttgATCAAATGTTTGCTGCTGAGCACCCTCATTCTCCCATTCATGTGTGTAAACAAGACGTTTTGGCTGTAGTTCCAGTTTCTATTACGATGTAATTCCAGTTTCTACTCCCAGGTGTGAATGCAATGTTATCTGACTGAAACAATTGAACAGAgacctttcttctttttttttaggattttactagttttactcactcactcccttGCAATGATTCATGTGTGATTCTTACATTTACACTGGCCTTTAACGATAACCCTCTCACTTGTTATAATGATTTCCAGTAAGACgcagagggttttttttgacGTGTGCTGCTTACCTCCTGCGTGTGATTGGTGAAACTTGCCTTAATGATATCTGCCACAGTTTCTCTTGGGCAATATTTGCCCACTCTGAGAGCGAAGCTCTTCGGGGTTTAGCCACAAGCTTGTGCTGATGTGATTTTCCAGTTAGGTCTTCTGGTTGGGGCAGCTCACTCATATTCTTCAAACTGTGCACAAGCACTGACTGTCACAACTGTGCCATTCGTTTTGTAAATAAACTAGTTTTGCACAAGAA

Function

symbol description
arpp19 Enables potassium channel regulator activity and signaling receptor binding activity. Involved in G2/M transition of mitotic cell cycle and positive regulation of gluconeogenesis. Predicted to be located in nucleoplasm. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: cAMP-regulated phosphoprotein 19

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181233 False 1146 TUCP 0.45 3 22076871 22078453
TU181234 False 1125 TUCP 0.45 3 22076871 22078453
XM_026919485.2 True 1204 mRNA 0.44 3 22076856 22078496
XM_026919486.2 False 1190 mRNA 0.44 3 22076849 22078496

Neighbor

gene id symbol gene type direction distance location
bet1l bet1l,LOC107740886,LOC107559993,LOC107569707 coding upstream 2839 22070646 ~ 22074010 (+)
prdm11 prdm11 coding upstream 29520 22035251 ~ 22047329 (+)
phf21ab LOC108275277,LOC108432679,LOC107673221,LOC105892361 coding upstream 42458 22004622 ~ 22034391 (+)
ambra1b ambra1,LOC108432675,LOC107559958 coding upstream 124154 21938847 ~ 21952695 (+)
glcea glce,glcea,LOC108274589,LOC107569710,LOC107673273,LOC107559985,LOC107740877,LOC107670231 coding upstream 140776 21932709 ~ 21936073 (+)
myo5ab LOC108275443,LOC108432640 coding downstream 3423 22081919 ~ 22107193 (+)
myo5c myo5c,LOC106561779 coding downstream 29851 22108347 ~ 22128791 (+)
gnb5a gnb5,LOC108432683,LOC106584742,LOC105018176 coding downstream 50992 22129488 ~ 22137092 (+)
ap4e1 ap4e1 coding downstream 61137 22139633 ~ 22156798 (+)
drd4a drd4,drd4a,LOC107561186,LOC107655149,LOC107726856 coding downstream 105506 22184002 ~ 22190803 (+)
G152838 NA non-coding upstream 265250 21810911 ~ 21811599 (+)
G152736 NA non-coding upstream 452185 21624450 ~ 21624664 (+)
G152403 NA non-coding upstream 951554 21122929 ~ 21125295 (+)
G152404 NA non-coding upstream 954013 21122322 ~ 21122836 (+)
G152391 NA non-coding upstream 1013790 21059032 ~ 21063059 (+)
G152984 LOC100304581 non-coding downstream 79371 22157867 ~ 22158096 (+)
G152985 NA non-coding downstream 79936 22158432 ~ 22158654 (+)
G152987 NA non-coding downstream 82162 22160658 ~ 22160872 (+)
G153013 NA non-coding downstream 136758 22215254 ~ 22215502 (+)
G153026 NA non-coding downstream 151809 22230305 ~ 22231430 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other upstream 18691 22052614 ~ 22058158 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other upstream 2328769 19661843 ~ 19748080 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other upstream 2691945 19323331 ~ 19384904 (+)
G151401 NA other upstream 2812956 19260624 ~ 19263893 (+)
faap24 faap24 other upstream 2951648 19121151 ~ 19125201 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other downstream 137779 22216275 ~ 22266382 (+)
syt7a syt7,LOC108432693,LOC107655153,LOC107754343,LOC107551433 other downstream 252267 22330763 ~ 22446147 (+)
LOC113529801 LOC108274632,LOC108274583 other downstream 521298 22599794 ~ 22623807 (+)
LOC113529608 NA other downstream 1053070 23131566 ~ 23139656 (+)
oaz2a oaz2,LOC108275215,LOC108432726 other downstream 1349342 23427838 ~ 23436830 (+)

Expression


Co-expression Network