G152985


Basic Information

Item Value
gene id G152985
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 22158432 ~ 22158654 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU181251
GGACATTGTGCATCTCCTGCAGTATACACTGCTCCACTGCTGGCTTCTGCTTCAACAGCACCAGCATGAAGAACAGGCTGATGGACAGAGTGTCTGGTGCCGCAATCACCATCTCCaacacacactgcctcacaTCATCTTCTGACATCTCTCCGTGATTCTGATGGAGATATGCAAGCAACATCAGCATCATATTCTTTATGTagggaataaaatacttcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181251 True 223 lncRNA 0.47 1 22158432 22158654

Neighbor

gene id symbol gene type direction distance location
ap4e1 ap4e1 coding upstream 1634 22139633 ~ 22156798 (+)
gnb5a gnb5,LOC108432683,LOC106584742,LOC105018176 coding upstream 21340 22129488 ~ 22137092 (+)
myo5c myo5c,LOC106561779 coding upstream 29641 22108347 ~ 22128791 (+)
myo5ab LOC108275443,LOC108432640 coding upstream 51239 22081919 ~ 22107193 (+)
bet1l bet1l,LOC107740886,LOC107559993,LOC107569707 coding upstream 84422 22070646 ~ 22074010 (+)
drd4a drd4,drd4a,LOC107561186,LOC107655149,LOC107726856 coding downstream 25348 22184002 ~ 22190803 (+)
pidd1 pidd1 coding downstream 125018 22283672 ~ 22296360 (+)
slc25a22a si:dkey-201c1.2,slc25a22,LOC107561181,LOC107732297,LOC107551436,LOC106096417 coding downstream 138373 22297027 ~ 22326565 (+)
ppp1r32 ppp1r32 coding downstream 295546 22454200 ~ 22464122 (+)
LOC113529790 fads2,LOC100305117,LOC108275104 coding downstream 322336 22480990 ~ 22491255 (+)
G152984 LOC100304581 non-coding upstream 336 22157867 ~ 22158096 (+)
G152838 NA non-coding upstream 346833 21810911 ~ 21811599 (+)
G152736 NA non-coding upstream 533768 21624450 ~ 21624664 (+)
G152403 NA non-coding upstream 1033137 21122929 ~ 21125295 (+)
G152404 NA non-coding upstream 1035596 21122322 ~ 21122836 (+)
G152987 NA non-coding downstream 2004 22160658 ~ 22160872 (+)
G153013 NA non-coding downstream 56600 22215254 ~ 22215502 (+)
G153026 NA non-coding downstream 71651 22230305 ~ 22231430 (+)
G153063 NA non-coding downstream 146104 22304758 ~ 22306096 (+)
LOC113529793 NA non-coding downstream 390318 22548972 ~ 22550482 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other upstream 79936 22076849 ~ 22078496 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other upstream 100274 22052614 ~ 22058158 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other upstream 2410352 19661843 ~ 19748080 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other upstream 2773528 19323331 ~ 19384904 (+)
G151401 NA other upstream 2894539 19260624 ~ 19263893 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other downstream 57621 22216275 ~ 22266382 (+)
syt7a syt7,LOC108432693,LOC107655153,LOC107754343,LOC107551433 other downstream 172109 22330763 ~ 22446147 (+)
LOC113529801 LOC108274632,LOC108274583 other downstream 441140 22599794 ~ 22623807 (+)
LOC113529608 NA other downstream 972912 23131566 ~ 23139656 (+)
oaz2a oaz2,LOC108275215,LOC108432726 other downstream 1269184 23427838 ~ 23436830 (+)

Expression


Co-expression Network