LOC113529608


Basic Information

Item Value
gene id LOC113529608
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 23131566 ~ 23139656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU181957
GCGCAGACTGTTCCAGGCTGCATCGGAGAGCAAGTGAGAGAGGGAATTGGTGTAGCACAGAAGAAGTGCTGTCCTCCattcatccttccttccttcttctgcATTTTCCAACTTCTCTCACTGCTGATCTCTCCTTCCACTGTGCTGTTCTTTGATCAGGGCAGACTGGGATGGGTTGTGGAAATTCCTCTGCGACTAATACCACAGCAGGAGGTCCTGCAGAGGCTGCGAAagatgtGACAGAAGATCCATCACAAGATGATGAGAAAAGAAGGAACTATGGTGGGGTGTATGTGGGACTACCGACAGATATGAACACAGTGCCAGCCAGTCAGTCCAAGTCCACACGGAAAGACTAGCCTATTAGAAACAGAGCAACAAGAAACCGCACTACAGTTGAATATCTATAGAAGGAGTTTCTTTGGACCAAAATAGACACCAAAACTGACCTCTGTGTGACATTATATGGTCTTTTATGAAGTGGTGCTGTGTGACTCTCCTCTGGGATTCCACTTGTACGGGAACCGTCGCTCTCTGAGCACGTCGAAGAACTGGGTTTAAAGAAGCTTCTtggaaaaggaaacaaaaggaAATCCTGACATTTAAATGGCACTGGAGCCAAAGTGGCGTTTGTAGCTCAGGAACACGCCTGAAGTTCAACTGTAATGAAGGCATTTCAACACTCAAACCTCGGATCAGACTCTGCAATAAAGGACTAACCTGCATCTAGGCTCCAATGTGAGACACCATTGCTATAATGAAACCATTGAAACGCACATACACTTTGACCAGAGAATTACAATTGTAATTTTCACAGTATGTAGTGACGATTAGTCCAGCTCAGTCCAGAGTTATGTAGTAATGAATGAAGCTGTCCATCTAACTGTATTCATCAACGTCCATGACCAAATTAACATAGAATTAATACATTATGCTCCTCATGCACTATGTGActagatacagatacagacacagcaAATTAGCTCTGCTGAACTAGGAAGTACTGGGACAAATTCTTAGTGGCCTTTATATTTAGTGTGCTATATTTTATGTCATTTCAAGTACATTACATTACTTGTATGTGTATTGCCT
>XM_026918896.2
ccctatGCCTCTCGTTCTTTCGCTCTCTGTGTCCCTCACTGTGCCAGCGCAGACTGTTCCAGGCTGCATCGGAGAGCAAGTGAGAGAGGGAATTGGTGTAGCACAGAAGAAGTGCTGTCCTCCattcatccttccttccttcttctgcATTTTCCAACTTCTCTCACTGCTGATCTCTCCTTCCACTGTGCTGTTCTTTGATCAGGGCAGACTGGGATGGGTTGTGGAAATTCCTCTGCGACTAATACCACAGCAGGAGGTCCTGCAGAGGCTGCGAAagatgtGACAGAAGATCCATCACAAGATGATGAGAAAAGAAGGAACTATGGTGGGGTGTATGTGGGACTACCGACAGATATGAACACAGTGCCAGCCAGTCAGTCCAAGTCCACACGGAAAGACTAGCCTATTAGAAACAGAGCAACAAGAAACCGCACTACAGTTGAATATCTATAGAAGGAGTTTCTTTGGACCAAAATAGACACCAAAACTGACCTCTGTGTGACATTATATGGTCTTTTATGAAGTGGTGCTGTGTGACTCTCCTCTGGGATTCCACTTGTACGGGAACCGTCGCTCTCTGAGCACGTCGAAGAACTGGGTTTAAAGAAGCTTCTtggaaaaggaaacaaaaggaAATCCTGACATTTAAATGGCACTGGAGCCAAAGTGGCGTTTGTAGCTCAGGAACACGCCTGAAGTTCAACTGTAATGAAGGCATTTCAACACTCAAACCTCGGATCAGACTCTGCAATAAAGGACTAACCTGCATCTAGGCTCCAATGTGAGACACCATTGCTATAATGAAACCATTGAAACGCACATACACTTTGACCAGAGAATTACAATTGTAATTTTCACAGTATGTAGTGACGATTAGTCCAGCTCAGTCCAGAGTTATGTAGTAATGAATGAAGCTGTCCATCTAACTGTATTCATCAACGTCCATGACCAAATTAACATAGAATTAATACATTATGCTCCTCATGCACTATGTGActagatacagatacagacacagcaAATTAGCTCTGCTGAACTAGGAAGTACTGGGACAAATTCTTAGTGGCCTTTATATTTAGTGTGCTATATTTTATGTCATTTCAAGTACATTACATTACTTGTATGTGTATTGCCTCTATCAAAGATTgtgtataatgaaaaaaaatggaaaattaccATTGTTTGCTTAGTCTGtttatgtatactatatatatatatacactatatatgtaTGCTGgacaaggaaagaaaaagcTATGTGCTTCTTTGGAAAGAAACAGTTCTCCCAAAGGATATAGTGCATTTGGGTTTTTGCCGCTGCTGCAAAAGTGCAAGCGCTGAAGCTTCTGGATGTGTCTGTTTGctaaaactgaaatgatttgcAAGCTAGTTCTAGGGAAAAGTGCAAATTATATCACCATCACTTATATACAGACTCAGGTGGACAGGGAAATGAAAGTGTGGCTAATTTTAGCAagaacatacattttaaatgtttagagAAAATAAGCTGTACGTAGTATACAGTTTGATGGTACACCATATAGGAGTAAAGGAGAATTTGTGTCTTCTAGAAAgtcacatgtttgtgtgttggttGAAAACTGAGCAAGATGGGTATGCTAAGATACACTGATAAGCTACACTTTATGTACTGAAAAAGCTATAAAC

Function

GO:

id name namespace
GO:0042136 neurotransmitter biosynthetic process biological_process
GO:0009448 gamma-aminobutyric acid metabolic process biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181957 False 1092 lncRNA 0.43 6 23131612 23139120
XM_026918896.2 True 1674 mRNA 0.41 6 23131566 23139656

Neighbor

gene id symbol gene type direction distance location
tubgcp6 tubgcp6,LOC107089493,LOC107578900 coding upstream 49806 23057692 ~ 23081760 (+)
plxnb2b plxnb2,LOC108432708 coding upstream 81676 22926200 ~ 23049890 (+)
parvg parvg coding upstream 316941 22807712 ~ 22814625 (+)
parvb parvb,LOC103134461 coding upstream 326720 22789992 ~ 22804846 (+)
hdac10 hdac10,LOC107754350 coding upstream 346477 22774381 ~ 22785089 (+)
depdc7b LOC108274636 coding downstream 84133 23223789 ~ 23230542 (+)
ppib ppib,LOC107673286,LOC107577199,LOC107727623,LOC107560023,LOC107680152,LOC107754356 coding downstream 95792 23235448 ~ 23240438 (+)
tmem138 tmem138,LOC105904230,LOC107551428,LOC107754383 coding downstream 170047 23309703 ~ 23316434 (+)
LOC113529603 NA coding downstream 312294 23451950 ~ 23467531 (+)
slc25a44a slc25a44,slc25a44a,LOC108274961,LOC108432728,LOC107673271,LOC107562286,LOC107727505,LOC107738649,LOC107680149 coding downstream 353417 23493073 ~ 23501054 (+)
LOC117598080 NA non-coding upstream 216956 22903211 ~ 22914610 (+)
G153450 NA non-coding upstream 344329 22787026 ~ 22787237 (+)
G153439 NA non-coding upstream 358663 22772695 ~ 22772903 (+)
LOC113529793 NA non-coding upstream 581084 22548972 ~ 22550482 (+)
G153063 NA non-coding upstream 825470 22304758 ~ 22306096 (+)
G153565 NA non-coding downstream 59546 23199202 ~ 23219002 (+)
G153617 NA non-coding downstream 179500 23319156 ~ 23320219 (+)
G153738 NA non-coding downstream 184396 23324052 ~ 23418340 (+)
G153771 NA non-coding downstream 244304 23383960 ~ 23388800 (+)
G153778 NA non-coding downstream 298790 23438446 ~ 23439645 (+)
LOC113529801 LOC108274632,LOC108274583 other upstream 507759 22599794 ~ 22623807 (+)
syt7a syt7,LOC108432693,LOC107655153,LOC107754343,LOC107551433 other upstream 685419 22330763 ~ 22446147 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other upstream 865184 22216275 ~ 22266382 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other upstream 1053070 22076849 ~ 22078496 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other upstream 1073408 22052614 ~ 22058158 (+)
oaz2a oaz2,LOC108275215,LOC108432726 other downstream 288182 23427838 ~ 23436830 (+)
crabp1a crabp1,crabp1a,LOC107680155,LOC107673308 other downstream 379554 23519210 ~ 23532607 (+)
LOC113530000 mdh other downstream 1210112 24349768 ~ 24365372 (+)
fcsk fuk,LOC108274775,LOC108274777 other downstream 1275249 24414905 ~ 24435079 (+)
chrm2a chrm2,LOC108427087,LOC107561244,LOC107662193,LOC107707993,LOC107658987,LOC107568718 other downstream 1798771 24938427 ~ 25054183 (+)

Expression


Co-expression Network