XLOC_005250


Basic Information

Item Value
gene id XLOC_005250
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 15857732 ~ 15859869 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011111
aaaaaaatctgctctctgttaaacagaaattgagggaaaaataaactatattaaaaataaataaaataagatatattataggttgtatataaaattacatttatttatatatatacatttatagacAACTAaacttatatataattttatttatttttttaaaaacatacacaGATTCAAAGAGAACCACAAATCAACAGGGAGACTGCAAAAGAACAGCTTCTACTTTAAACTGTACTGACTGAAAATCTACtaattaaatatatcaaaactatacagataaatgtaaaataaagttaaacaccctaaatctgttgaaacgagTCGATCTGATGCCAGTTGAGATTGCAGGATATTATTGGTCTGAAGCTCATGtccaagtttattttacattctatggtAGAAACATGCATTGAGCCTTGCTAGATCCTCCTTTGGTGCGCGTCTCTTATtaaacactcacaggacattaatttAGACAACTATGCAGATGTATtaaatagttcacaaaaaaatacacaaagagagactttcactttcacttcccgCATTGTTTGGGATTGAACAGACATGCGTAAAGTAGTTGCAGATGCGATCAAGCTGTTTGTGCGCTTGTTTTGAGTTTGAAGTGATCAATTAGAGAACAGGAGAAAGCGCATGACTtcgatcattttaatatagcatactataatgaaatccaaaaagttatagtataatattgagagGTCATATCGTGGCCTACCTGCAGGGCTGCTGAGGCCCACTTTTTTTGACTTAATctgattgtaatgcagtaatgtgcaccttttgtaaagctgaaataattattgtaaaaagtgctgtACAAATAAACCTGACTTGAATTGATCAGTTGGTGGAGAGCTGTACTTTGGGAAGTCCTGCTGCTGCTGCCGGGCTTCTAGAGTACCTGCAGGCCAGAGACTGGATCTCTTCTCACCTGCACTCAACTCAACACTGATGCAGCACCAGGTGGGACTGCAGTCCTTCAGACAGACATCTACATCCTGGTGGGCAGAGCGGACAGGCTTACAGGGagaagattttcagctttctttgatAACTAGAAATTTCCGAAGAACTGCATTTATCAGAATTAAACATGCAaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011111 True 1128 lncRNA 0.35 2 15857732 15859869

Neighbor

gene id symbol gene type direction distance location
XLOC_005249 acbd4 coding downstream 237642 15568761 ~ 15620090 (-)
XLOC_005248 hexim1 coding downstream 290628 15565344 ~ 15567104 (-)
XLOC_005247 NA coding downstream 407474 15445574 ~ 15450258 (-)
XLOC_005246 NA coding downstream 613732 15242567 ~ 15244000 (-)
XLOC_005245 sult1st6 coding downstream 652645 15197857 ~ 15205087 (-)
XLOC_005251 kcnj19b coding upstream 202691 16062560 ~ 16084835 (-)
XLOC_005252 hectd2 coding upstream 472547 16332416 ~ 16380961 (-)
XLOC_005253 pcgf5b coding upstream 545729 16405598 ~ 16435150 (-)
XLOC_005254 rpp30 coding upstream 586359 16446228 ~ 16452200 (-)
XLOC_005255 CABZ01044816.1 coding upstream 633483 16493352 ~ 16493468 (-)
XLOC_005244 NA non-coding downstream 731683 15125409 ~ 15126049 (-)
XLOC_005243 NA non-coding downstream 737619 15117887 ~ 15120113 (-)
XLOC_005240 NA non-coding downstream 1017173 14839787 ~ 14840559 (-)
XLOC_005258 FO704724.2 non-coding upstream 712326 16572195 ~ 16572309 (-)
XLOC_005260 BX465840.1 non-coding upstream 738874 16598743 ~ 16598857 (-)
XLOC_005263 BX465840.2 non-coding upstream 794812 16654681 ~ 16654795 (-)
XLOC_005265 BX322603.1 non-coding upstream 883183 16743052 ~ 16746547 (-)

Expression


Co-expression Network