cratb (cratb,LOC108274804,LOC108435838,LOC107561339,LOC107563340,LOC107758403,LOC107679039,LOC105903715)


Basic Information

Item Value
gene id cratb
gene name cratb,LOC108274804,LOC108435838,LOC107561339,LOC107563340,LOC107758403,LOC107679039,LOC105903715
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3293799 ~ 3308324 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026909884.2
GCAAACAGTGCGCACGTGCGCTAGGCTCTTCCTGCTGTGTCCCGGACGTGCAGAGGAGCACGAGCTCGAgctttgcaaaacaaaacaaaacaagacaagacAGACTTTTGATCAACTCCAGTGACCGGAAGTTGATCAGGCGCACTGTTTTGCACAGTTAGCGTATAACTGATGAACTTTTTAACTGTTGTAATAATCGCATGGAGATAATGCGTTTCCCTGCTCCGCCATTCTGCGGCTTCTGTTTACACTTTAATGTGAATTAATTAACTGGTTTACTGATTAACTGGTTTATTAATTTACTGCTTTGTGTCGTGTGTGGGTGCTGACGTCATGATTTTAGAGACATTATCACGAGCAAACTTTGCTTTGCGCTCGAGAgtccCGGTGAGAAGAGTGCATCATTCGTCtgatcttcctcctcctcagccgGTTCCTCTGTTAGCTCAGACGCTGCAGCGCTACCTGCTGGCCCTGGAGCCGCTCTTACCCCCGGACGAGCTGCAGCACACGCGGAAGACGGTGCAGCGATTCGGCAGTGCTGGGGGCCTCGGAGAGAGACTGCAGAGAGGACTGGAGAAAcgcaccaaacacacacacaactggatatcaGATTGGTGGGTTCAGTGGGCGTATCTGGAGAGTCGTCAGCCCCTGGCTGTTCACTCCAACCCGGCCATCTCACTGCCCCGACGTGACTTCAGCGACTGGAGAGGACAGCTGTTgttTGCAGCGAAGCTCATCTCCGCAGTGCTCGACTTCAAGAATAAAGTGGACAGtgtggggTTACCTGTAGAGTATATGCGTGGCAGGCCGTTGTGTATGGAGCTGTTTCCTCGACTCTTCTCGTCATGTCGTATTCCCGGGCCGAAGCATGATAATATGATTCACTATGGCCGCCCACGCCGTGGCCCCACCCACATCACCGTGGTGCGAAACTACCAGtttttccAGCTGGATGTGTACAATAGTGATGGCACCCCCCTCACTCAGAGTCAGATTCACTCTCAGCTGTGCCGGATCCGGGCTCAGTCCTGGAAAACCGATAAAGAGCCGATGGGCATCCTGACGAGTGACCACAGACACACGTGGGGCCAGGCTTACACACGCCTACTgcaggATAAGATCAATAAGGAGTCGGTGAGGCTGATAGAGAAAGGTCTGTTCACACTGTGTCTCGACTCGCCCGTCATGACCATCTGTGATGAGAAGTACTCCAGCAGAATGGCAGCTCAGATCCTTCATGGAGGCGGGACTTACTCCAACAGTGGGAACCGCTGGTTCGATAAGACGTTACAGtttgTGGTCAGTGAGGACGGATCGTGGGGTCTCCTGTACGAACAGGCCACAGCTGAAGGGCTTCCAATAGCCACCCTGCTGGACCACATCCTGCAGtactgTAAGAAGCCCGAGACAGTCCGAGCTCCTCTCGTTCCTCTGCCGATGCCGAAGAAGCTTTACTTCTACATCGACCGCGCCATCAAGTGGGACCTGGAGATGGCCAAGCAGAACCTCAACATCCTCATCAACGATCTGGACATCAGCTGCTTTAACTTCCTGCGCTTTGGGAAGGAGTTTCCCAAACAGCTGCATTTAAGCCCCAACTCCTTCATCCAGGTGGCCATCCAGCTCGCATACTACAGagtgcaTGGGGAGGTGTGTGCCTCCTGCGACATCGCATCGCTCCGAATGTTCCGGGGAGGACGCACCGACTACATCCGCTCCCCGACCAATCAGACGCTGAGATTCGTCCAGGCCTTTGATGACCCCGCCCTGTCTagggAGGTGAAGGTGGAGCTGTTGTGTGAAGCTGTGGAAGCTTACAGTCAGCTGACAGATCAGGCGCTGAAAGGCCAGGGTATCGATCGCCACCTGCTGGGTCTGAAGCTGCAGGCCATCGAGGAGGGATTGAGCGTGCCCAGAATGTTCATGGACACGGCTTATGGACTCGCCACGCACTGGAAACTCCGCACCGGacagGTTCCCACTAACACGGACAGCGTGATGTGTTTCGGGCCGCTGGTTCCGGACGGTTACGCCGTGTGTTACAACCCTCAGCCGGATCACGTTCACTTCTCCATCACCGCCTTCAACTGCTGCGAGGAGACCAACGCCGAGAAACTAGCCGTGACGATCCAGAGCGCCCTCCACGACCTGCACGAGTTACTACAGCCAGCTGCATAGACGCACGAGCTTTAAAACCTCCTCCATATGCTTCATACCAAATAGCATAAACATGCCAGTAAATGATACGAAAGGAACATTGGGAGTTAGTAATAAATGATTTAGTTTGGTGTTGGCTTCAGGTTCAGGTAGGGGGTGTGGCCTACAGTTTGAATATATTAGAATTcggatgataataataaacttcaaatatgatttattatttttatattaaatgcttATGTCTAAATAGTTTTAAGACAAATGGCATCTTTTGAGGTTAATGTGTGACTAGCCTCAACGTGTgactagctacattagccttgtagctccagtaaTAGCTAAAAAAAAGCAAGCTTCAGACACTAAACATGCCTTGGTGAGTGACTATATTTGGCGTATTTGACCCAAATATTCCTTTAAGACGGTGAACATGTCTCATCTGCATTCTACAGCTCCATTTTTGACATATTGAATAATATTTCATATGATGATTCCAAGTTCAAATTCAACTCCAACTGGAGCTTTCAAAGCAAAGCTTAAGTAAAAGCattataaaacacttttaaaagcaTTTGTGTAGCTCATTTCATCAAGTTTTTCCTACTCAACAGAACGATGACTTTGCTGTCTGAAGTGTTTAAAAGCACCGTTTATAAAGGATCAGTCTAAACTCTGTCGATCGGGTTGGGTTTCAACAGCATGCTTTATTTGAAGTGGTGCTACATAAATGTCTTAATCCACTATTTACTGCGCAGATTGTACGTGTGACAGCATCATGGTggttgcagtgcattatgggatctCTATTTATCTGAGAAATGCATGTTTGATTCCACTATTAGGCAAATAATACGCATAAGATATCTGCTTTCATCTGAAAGTCTCAGCTTGTGTGTGGAATTGTGCTCAGCAAATATTTGTACTTGATATATAAGGGTTCTGTGTATACTcagttttggggaaaaaaataaataagaaattgtgtattttg

Function

symbol description
cratb Predicted to enable carnitine O-acetyltransferase activity. Predicted to be involved in carnitine metabolic process, CoA-linked. Predicted to be active in peroxisome. Human ortholog(s) of this gene implicated in neurodegeneration with brain iron accumulation. Orthologous to human CRAT (carnitine O-acetyltransferase).

NR:

description
carnitine O-acetyltransferase-like isoform X1

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026909884.2 True 3157 mRNA 0.49 15 3293799 3308324

Neighbor

gene id symbol gene type direction distance location
LOC117597933 LOC108279645 coding upstream 44044 3248524 ~ 3249755 (+)
slc39a7 slc39a7,LOC107395789 coding upstream 139953 3146038 ~ 3153846 (+)
rps18 rps18,LOC107726165,LOC107693766 coding upstream 170085 3118288 ~ 3123714 (+)
LOC113523850 NA coding upstream 232462 3055623 ~ 3061337 (+)
LOC117598055 NA coding upstream 395542 2893487 ~ 2898257 (+)
ppt2b ppt2,LOC103364422 coding downstream 38248 3346572 ~ 3356643 (+)
rps5 rps5,LOC105903695 coding downstream 54076 3362400 ~ 3368547 (+)
LOC113523857 NA coding downstream 55891 3364215 ~ 3364348 (+)
LOC113523859 NA coding downstream 57801 3366125 ~ 3366258 (+)
LOC113523858 NA coding downstream 59881 3368205 ~ 3368338 (+)
trnac-gca_12 NA non-coding upstream 32854 3260874 ~ 3260945 (+)
trnac-gca_11 NA non-coding upstream 33387 3260341 ~ 3260412 (+)
trnac-gca_10 NA non-coding upstream 33920 3259808 ~ 3259879 (+)
trnac-gca_9 NA non-coding upstream 34538 3259190 ~ 3259261 (+)
trnac-gca_8 NA non-coding upstream 36284 3257444 ~ 3257515 (+)
G142553 NA non-coding downstream 4437 3312761 ~ 3321168 (+)
G142573 NA non-coding downstream 71397 3379721 ~ 3381739 (+)
G142580 NA non-coding downstream 82581 3390905 ~ 3391147 (+)
G142575 NA non-coding downstream 107198 3415522 ~ 3435565 (+)
G142584 NA non-coding downstream 111228 3419552 ~ 3421435 (+)
LOC113523823 NA other upstream 261273 2431145 ~ 3032526 (+)
LOC117598067 NA other upstream 485162 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 600957 2687795 ~ 2692842 (+)
LOC117598105 NA other upstream 735072 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 815841 2475158 ~ 2477958 (+)
LOC113523845 NA other downstream 75856 3384180 ~ 3396067 (+)
G142576 NA other downstream 89346 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1176509 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2432583 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3278887 6587211 ~ 6593605 (+)

Expression


Co-expression Network