LOC113523877


Basic Information

Item Value
gene id LOC113523877
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1496473 ~ 1505004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026909931.2
TGTGCGGTAAGTAGACGCCCACATGGTTCACGGGTTAAAGTGCTGATTCTCGAGGCACTCGGCTCACTTGCACACCTCGGAGAAAGAGAGCGGTTTGGAAACAGAGAGCAGTGAGtgTTGCTTTGCAGAAATGGCAGAAATTGAAGAGATTGTTGAAGGAGTTGAAGAAGCGATAGAAGGAGCAGAAGAAGGAATTGAGGAATTATCAGAAGAAGTACAAGAGGAAATTCAAGCTGAAATAGCTGAAACCCGCACTGTGATCGAAGAGCTTACTACAACAGAGAGTAAACTCAGAGGTATCCTCAAGTCCCTCGGAAGTTGTGTATCTGACATAGCCAAGTTTACTTTCAAAAATATAGCGATTGGCGCCATCCTGTGGGGGGTAAATGTTGCTTTAAACAAGCTGCTTCCACAAGGACATCAACAGGAAACCAAGACGAAAATTCGTAATGTAATAAAGGCTTTGAGTGATGTGATCAATGCTGAAGCCGCGATAAACCAGAAGACACTGGAGTGGATGAAGGCCCACGAGAATGATAAAATCACTCTGGATGGAATTGAAGTGCCAATGGAAGCCATTCTGACAAAATACATGAAGCCATTAGTTGAGGCAACTGATAAATCCAAAACCATTGCTGAAACCCTTCAAGAAAAAGTGGACGggaaaattcagtttaaatgtCCAACCGCAGACGACATGAGAAAATTCATGGAAGTTACCGAAGTGTTCATCAAAGCCTTCACCGATCTCATCGTGTTCATTCTGAAACATGAAGACCAGGTTAAGGTGCTGCAGAGCTTTCCGGTAAAAGAGGGAGATCTTGTTGACCTAACAGCCAAGCTTAACGTCGCCAAGGACTTACCTCTGTGGTAAAATAAATTGTGACTTGATAACAACAGTAATCAGAAATGGCTGTTTAATCAGAAATGAGTTTTTTAAGCATACGTTTGGCTAATTCAACAGTTGTATCTACTGAATTTATAGAATATAGCATGTAAAACAATATCAAATTCACATCTTCTTTGAATTTATTTACTTGGTTGcattttttataacaattatataCAAAAAGATCAATAATTTCTGATTTCTTTTAATGAATTAACTTTCATTGTCTTTATATAAGTTACTAATCTGTATTTTTGGATGAGGAACATCTTTCTTTATCAaataaacaaaggcaaagtTTTGTTATCATACAAGTTTTAACATGTAATGTTGTAAAACTACTGTTTAAAGCAGTCTCAttatgaatcagtgaatgttgTCCATTTCCTGATCAAAGAACTGCAGCCTGAATCTCcaatctccatttttttttttcatttgtatctgcatccattaattcattaaaaaaaatta
>XM_026909932.2
CTCGAGGCACTCGGCTCACTTGCACACCTCGGAGAAAGAGAGCGGTTTGGAAACAGAGAGCAGTGAGtgtgagtaaacacacacagcactttgGCAGTGAAACATAAAGAGGTTTAGGAGAGGAGAACATTCAGAACCAGgTTGCTTTGCAGAAATGGCAGAAATTGAAGAGATTGTTGAAGGAGTTGAAGAAGCGATAGAAGGAGCAGAAGAAGGAATTGAGGAATTATCAGAAGAAGTACAAGAGGAAATTCAAGCTGAAATAGCTGAAACCCGCACTGTGATCGAAGAGCTTACTACAACAGAGAGTAAACTCAGAGGTATCCTCAAGTCCCTCGGAAGTTGTGTATCTGACATAGCCAAGTTTACTTTCAAAAATATAGCGATTGGCGCCATCCTGTGGGGGGTAAATGTTGCTTTAAACAAGCTGCTTCCACAAGGACATCAACAGGAAACCAAGACGAAAATTCGTAATGTAATAAAGGCTTTGAGTGATGTGATCAATGCTGAAGCCGCGATAAACCAGAAGACACTGGAGTGGATGAAGGCCCACGAGAATGATAAAATCACTCTGGATGGAATTGAAGTGCCAATGGAAGCCATTCTGACAAAATACATGAAGCCATTAGTTGAGGCAACTGATAAATCCAAAACCATTGCTGAAACCCTTCAAGAAAAAGTGGACGggaaaattcagtttaaatgtCCAACCGCAGACGACATGAGAAAATTCATGGAAGTTACCGAAGTGTTCATCAAAGCCTTCACCGATCTCATCGTGTTCATTCTGAAACATGAAGACCAGGTTAAGGTGCTGCAGAGCTTTCCGGTAAAAGAGGGAGATCTTGTTGACCTAACAGCCAAGCTTAACGTCGCCAAGGACTTACCTCTGTGGTAAAATAAATTGTGACTTGATAACAACAGTAATCAGAAATGGCTGTTTAATCAGAAATGAGTTTTTTAAGCATACGTTTGGCTAATTCAACAGTTGTATCTACTGAATTTATAGAATATAGCATGTAAAACAATATCAAATTCACATCTTCTTTGAATTTATTTACTTGGTTGcattttttataacaattatataCAAAAAGATCAATAATTTCTGATTTCTTTTAATGAATTAACTTTCATTGTCTTTATATAAGTTACTAATCTGTATTTTTGGATGAGGAACATCTTTCTTTATCAaataaacaaaggcaaagtTTTGTTATCATACAAGTTTTAACATGTAATGTTGTAAAACTACTGTTTAAAGCAGTCTCAttatgaatcagtgaatgttgTCCATTTCCTGATCAAAGAACTGCAGCCTGAATCTCcaatctccatttttttttttcatttgtatctgcatccattaattcattaaaaaaaatta

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026909931.2 False 1363 mRNA 0.37 3 1496473 1505004
XM_026909932.2 True 1387 mRNA 0.37 3 1496521 1505004

Neighbor

gene id symbol gene type direction distance location
LOC113523903 LOC108274807 coding upstream 23393 1462445 ~ 1473080 (+)
LOC113525101 NA coding upstream 1052025 438027 ~ 444448 (+)
LOC113525100 LOC108274824 coding upstream 1166489 324146 ~ 329984 (+)
LOC113525382 gja9 coding upstream 1363066 127708 ~ 133407 (+)
fabp10b LOC108274544 coding upstream 1369135 115546 ~ 127338 (+)
LOC113523893 mterf1 coding downstream 29863 1534867 ~ 1540467 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding downstream 85854 1590858 ~ 1597758 (+)
ehmt2 ehmt2 coding downstream 117762 1622766 ~ 1646549 (+)
slc44a4 NA coding downstream 142720 1647724 ~ 1682793 (+)
LOC113524921 NA coding downstream 468528 1973532 ~ 1998149 (+)
G142062 NA non-coding upstream 13826 1480710 ~ 1482647 (+)
G142058 NA non-coding upstream 17834 1476980 ~ 1478639 (+)
G141930 eomes,LOC108274799 non-coding upstream 176914 1313581 ~ 1319559 (+)
G141889 NA non-coding upstream 273983 1178968 ~ 1222490 (+)
G142074 LOC108274826 non-coding downstream 4979 1509983 ~ 1515675 (+)
G142097 NA non-coding downstream 157084 1662088 ~ 1687665 (+)
G142052 LOC108274818,LOC108274817 non-coding downstream 198884 1703888 ~ 1719950 (+)
G142055 NA non-coding downstream 216309 1721313 ~ 1778196 (+)
G142110 NA non-coding downstream 224153 1729157 ~ 1828083 (+)
G141825 LOC108274854,LOC108279645 other upstream 286600 938715 ~ 1209873 (+)
LOC117598144 NA other upstream 516838 941723 ~ 979635 (+)
G141824 LOC108274854 other upstream 600889 767055 ~ 895584 (+)
LOC117598023 LOC108274854 other upstream 627382 867669 ~ 869091 (+)
G141823 LOC108274854 other upstream 754272 674232 ~ 742201 (+)
dus3l dus3l other downstream 43253 1548257 ~ 1559910 (+)
G142093 LOC108274838 other downstream 106507 1611511 ~ 1613336 (+)
LOC113523891 ehmt2 other downstream 110139 1615143 ~ 1622790 (+)
LOC113524920 NA other downstream 550027 2055031 ~ 2085878 (+)
LOC113545687 NA other downstream 564234 2069238 ~ 2183053 (+)

Expression


Co-expression Network