LOC113524922


Basic Information

Item Value
gene id LOC113524922
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2006066 ~ 2033649 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911312.2
ATCACAAACTGAAGGATTTCACATGAGTTTCGTGAGGACAAAAGACAGCAATGTGGATTCTTGCTTTAACTGCTCTCCTGGTTTATGGCTCTGTACGCACAGCTCACAGTGctATGACAAATAATAGAGGCACAGAGGGGGGTAACACTGCTCTCTTCTGTGAGAATAAGGGTAGTGTGATTTGGAGTAAAGGTGTTGATGGAGGGAGAGGGGACATCCTCACTGCTCAACATGGAGAAGTCACCATTAAACACAAACCTGATCCAGATGACAGATACACTGTGTTAAGTGATTCATCACTCGTGATAAaggatctgtctctctcagactcGGGGATTTACTACTGTAACGCTGTTCCTGTGGTCAGTCTGACTGTCACTCCATTACAAACCTCAGGCGAAAAAAACGAGGAGGATGATGacaatggtgatgatgatgatgatgaaacacCGTGGTGGTCAGTCGCTGCTGCAGTTGGAGTGAGCTCCCTGGTGGTGTTGCTGTTGGTTCTTTCAATATGGAGATTTTTCACTAAAAGGAGAACACATCTGCAAAACCAGGTGCAAGTGTATGACTCTGTTAACAACCTTCCAGCAGCCCCACAACCTGCAGGATTCAGTGTTACACACGTCTATGACTCCATTAACAATCTTCCAGAAGCCCCACAATGTGgtgatcagcagagagagagcgaggtcGTGTATTTCCTCGCACAAAACCCAACATCCAACACCACAGgcaatcaggagagagagaatgaggctGTATATTTCCTGGCAACAGACCCAACGTCCAACAGTGCAgACCAGGACCAAGTTGGACAGCTCTACGCCAAGATCaagccaaaaaataaaacctgaagTTTGtctttatatcattattatcattattaataatacgTACCCCTGCAGCtataattttctgtatttaGTTTGTAATAATTGGATGCCTGTACTGCTTTAATAAATTCATCTAACAC
>XM_034307705.1
ATCACAAACTGAAGGATTTCACATGAGTTTCGTGAGGACAAAAGACAGCAATGTGGATTCTTGCTTTAACTGCTCTCCTGGTTTATGGCTCTGTACGCACAGCTCACAGTGctATGACAAATAATAGAGGCACAGAGGGGGGTAACACTGCTCTCTTCTGTGAGAATAAGGGTAGTGTGATTTGGAGTAAAGGTGTTGATGGAGGGAGAGGGGACATCCTCACTGCTCAACATGGAGAAGTCACCATTAAACACAAACCTGATCCAGATGACAGATACACTGTGTTAAGTGATTCATCACTCGTGATAAaggatctgtctctctcagactcGGGGATTTACTACTGTAACGCTGTTCCTGTGGTCAGTCTGACTGTCACTCCATTACAAAGTATCACGACTGCAAGAGCCACGATGGAAAAAGATTCAGCCTCAGGCGAAAAAAACGAGGAGGATGATGacaatggtgatgatgatgatgatgaaacacCGTGGTGGTCAGTCGCTGCTGCAGTTGGAGTGAGCTCCCTGGTGGTGTTGCTGTTGGTTCTTTCAATATGGAGATTTTTCACTAAAAGGAGAACACATCTGCAAAACCAGGTGCAAGTGTATGACTCTGTTAACAACCTTCCAGCAGCCCCACAACCTGCAGGATTCAGTGTTACACACGTCTATGACTCCATTAACAATCTTCCAGAAGCCCCACAATGTGgtgatcagcagagagagagcgaggtcGTGTATTTCCTCGCACAAAACCCAACATCCAACACCACAGgcaatcaggagagagagaatgaggctGTATATTTCCTGGCAACAGACCCAACGTCCAACAGTGCAgACCAGGACCAAGTTGGACAGCTCTACGCCAAGATCaagccaaaaaataaaacctgaagTTTGtctttatatcattattatcattattaataatacgTACCCCTGCAGCtataattttctgtatttaGTTTGTAATAATTGGATGCCTGTACTGCTTTAATAAATTCATCTAACAC
>XM_034307706.1
GGACACAAGACAGCAATGTGGGTTCTTGCTTTAACTGCTCTCCTGGTTTATGGCTCTGTACACACAGCTCACAGTGctATGACAAATAATAGAGGCACAGAGGGGGGTAACACTGCTCTCTTCTGTGAGAATAAGGGTAGTGTGATTTGGAGTAAAGGTGTTGATGGAGGGAGAGGGGACATCCTCACTGCTCAACATGGAGAAGTCACCATTAAACACAAACCTGATCCAGATGACAGATACACTGTGTTAAGTGATTCATCACTCGTGATAAaggatctgtctctctcagactcGGGGATTTACTACTGTAACGCTGTTCCTGTGGTCAGTCTGACTGTCACTCCATTACAAAGTATCACGACTGCAAGAGCCACGATGGAAAAAGATTCAGCCTCAGGCGAAAAAAACGAGGAGGATGATGacaatggtgatgatgatgatgatgaaacacCGTGGTGGTCAGTCGCTGCTGCAGTTGGAGTGAGCTCCCTGGTGGTGTTGCTGTTGGTTCTTTCAATATGGAGATTTTTCACTAAAAGGAGAACACATCTGCAAAACCAGGTGCAAGTGTATGACTCTGTTAACAACCTTCCAGCAGCCCCACAACCTGCAGGATTCAGTGTTACACACGTCTATGACTCCATTAACAATCTTCCAGAAGCCCCACAATGTGgtgatcagcagagagagagcgaggtcGTGTATTTCCTCGCACAAAACCCAACATCCAACACCACAGgcaatcaggagagagagaatgaggctGTATATTTCCTGGCAACAGACCCAACGTCCAACAGTGCAgACCAGGACCAAGTTGGACAGCTCTACGCCAAGATCaagccaaaaaataaaacctgaagTTTGtctttatatcattattatcattattaataatacgTACCCCTGCAGCtataattttctgtatttaGTTTGTAATAATTGGATGCCTGTACTGCTTTAATAAATTCATCTAACAC
>XM_034307707.1
ATCACAAACTGAAGGATTTCACATGAGTTTCGTGAGGACAAAAGACAGCAATGTGGATTCTTGCTTTAACTGCTCTCCTGGTTTATGGCTCTGTACGCACAGCTCACAGTGctATGACAAATAATAGAGGCACAGAGGGGGGTAACACTGCTCTCTTCTGTGAGAATAAGGGTAGTGTGATTTGGAGTAAAGGTGTTGATGGAGGGAGAGGGGACATCCTCACTGCTCAACATGGAGAAGTCACCATTAAACACAAACCTGATCCAGATGACAGATACACTGTGTTAAGTGATTCATCACTCGTGATAAaggatctgtctctctcagactcGGGGATTTACTACTGTAACGCTGTTCCTGTGGTCAGTCTGACTGTCACTCCATTACAAAGTATCACGACTGCAAGAGCCACGATGGAAAAAGATTCAGCCTCAGGCGAAAAAAACGAGGAGGATGATGacaatggtgatgatgatgatgatgaaacacCGTGGTGGTCAGTCGCTGCTGCAGTTGGAGTGAGCTCCCTGGTGGTGTTGCTGTTGGTTCTTTCAATATGGAGATTTTTCACTAAAAGGAGAACACATCTGCAAAACCAGGTGCAAGTGTATGACTCTGTTAACAACCTTCCAGCAGCCCCACAACCTGGATTCAGTGTTACACACGTCTATGACTCCATTAACAATCTTCCAGAAGCCCCACAATGTGgtgatcagcagagagagagcgaggtcGTGTATTTCCTCGCACAAAACCCAACATCCAACACCACAGgcaatcaggagagagagaatgaggctGTATATTTCCTGGCAACAGACCCAACGTCCAACAGTGCAgACCAGGACCAAGTTGGACAGCTCTACGCCAAGATCaagccaaaaaataaaacctgaagTTTGtctttatatcattattatcattattaataatacgTACCCCTGCAGCtataattttctgtatttaGTTTGTAATAATTGGATGCCTGTACTGCTTTAATAAATTCATCTAACAC
>XM_034307708.1
CTGAAGGATTTCACATGAGTTTCGTGAGGACACAAGACAGCAATGTGGGTTCTTGCTTTAACTGCTCTCCTGGTTTATGGCTCTGTACGCACAGCTCACAGTGctaTACCCAATCACAGAGGCACAGAGGGGGTAACACTGCTCTCTCCTGTGAGAATAATGGTAAAGTGATTTGGAGTAAAGGTGTTGATGGAAGGAGAGAGAACATCCTCACTGCTCAACACGGAAAAGCCCCCATTAAACACAAACCTGATCCAGATGACAGATACACTGTGTTAAGAGATTTATTACTCGTGACAAagaatctgtctctctcagactcGGGGATTTACTACTGTAACTCTGTTCATGTGGTCAGTCTGACTGTCACTCCATTACAAAcCATTTACAATCAGAGAGGCACAGAGGGGGGTGACACTGCTCTCTACTGTGAGAATGATGGTAAAGTGATTTGGAGTAAAGGTGTTGATGGAGGGAGAGGGGACATCCTCACTGCTCAACATGGAAAAGTCCCCATTAAACACAAACCTGATCCAGATGACAGATACACTGTGTTAAGTGATTTATCACTCATGATAAaggatctgtctctctcagactcGGGGATTTACTACTGTAACGCTGTTCCTGTGGTCAGTCTGACTGTCACTCCATTACAAAGTAGAACTGCCAAGACAGAGAAAGTTTCCCCTGGAAAAGGTAGCACAGCTGAGACAGAGGTGGATACAACTGAAAAAGTCAAGCAGTTAAAATATTATCCTATTAGAAGATGTTAAAACATTATCAATAATACACAAGACATATAAATTTTACTATATATTTGAAATTCAGGTATCACGAC
>XM_034307709.1
cACAATCACAAACTGAAGGATTTCACAAGAGTTTCGTGAGGACACAAGACAGCAATGTGGGTTCTTGCTTTAACTGCTCTCCTGGTTTATGGCTCTGTACACACAGCTCACAGTGccATATTAATTCAGAGAGGCACAGAGGGGGGTGACACTGCTCTCTACTGTAAAAATGATGGTAAAGCGATATGGAGTAAAGGTGTTGATGGGGGGAGAGGGAGGATCCTCACTGCTCAACATGGAGAAGTCACCATTAAACACAAACCTGATCCAGATCACAGATACACTGTGTTAAGTGATTTATCACTCATGATAAagaatctgtctctctcagactcGGGGATTTACTACTGTAACGCTGTTCCTGTGGTCAGTCTGACTGTCACTCCATTACAAAcCATTTACAATCAGAGAGGCACAGAGGGGGGTGACACTGCTCTCTACTGTGAGAATGATGGTAAAGTGATTTGGAGTAAAGGTGTTGATGGAGGGAGAGGGGACATCCTCACTGCTCAACATGGAAAAGTCCCCATTAAACACAAACCTGATCCAGATGACAGATACACTGTGTTAAGTGATTTATCACTCATGATAAaggatctgtctctctcagactcGGGGATTTACTACTGTAACGCTGTTCCTGTGGTCAGTCTGACTGTCACTCCATTACAAAGTAGAACTGCCAAGACAGAGAAAGTTTCCCCTGGAAAAGGTAGCACAGCTGAGACAGAGGTGGATACAACTGAAAAAGTCAAGCAGTTAAAATATTATCCTATTAGAAGATGTTAAAACATTATCAATAATACACAAGACATATAAATTTTACTATATATTTGAAATTCAGG

Function

GO:

id name namespace
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko04145 Phagosome
ko04670 Leukocyte transendothelial migration
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911312.2 False 979 mRNA 0.44 9 2024780 2033649
XM_034307705.1 True 1018 mRNA 0.44 10 2024780 2033649
XM_034307706.1 False 983 mRNA 0.44 10 2006105 2033649
XM_034307707.1 False 1015 mRNA 0.44 10 2024780 2033649
XM_034307708.1 False 841 mRNA 0.42 5 2015657 2025803
XM_034307709.1 False 845 mRNA 0.42 5 2006066 2025794

Neighbor

gene id symbol gene type direction distance location
LOC113524921 NA coding upstream 7917 1973532 ~ 1998149 (+)
slc44a4 NA coding upstream 323273 1647724 ~ 1682793 (+)
ehmt2 ehmt2 coding upstream 359517 1622766 ~ 1646549 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding upstream 408308 1590858 ~ 1597758 (+)
LOC113523893 mterf1 coding upstream 465599 1534867 ~ 1540467 (+)
LOC113524923 NA coding downstream 3226 2036875 ~ 2053264 (+)
LOC113545587 LOC108274833 coding downstream 151074 2184723 ~ 2195601 (+)
lgals17 LOC108274834 coding downstream 173274 2206923 ~ 2217442 (+)
LOC113545586 NA coding downstream 193272 2226921 ~ 2239299 (+)
LOC113545612 NA coding downstream 215837 2249486 ~ 2255836 (+)
LOC117597929 LOC108274864,LOC108274865 non-coding upstream 2929 1999256 ~ 2003137 (+)
G142164 atf6b non-coding upstream 55719 1947881 ~ 1950347 (+)
G142157 NA non-coding upstream 101632 1903163 ~ 1904434 (+)
G142134 NA non-coding upstream 135557 1869549 ~ 1870509 (+)
G142122 NA non-coding upstream 149716 1851472 ~ 1856350 (+)
G142301 NA non-coding downstream 18809 2052458 ~ 2052691 (+)
G142302 NA non-coding downstream 21350 2054999 ~ 2103929 (+)
G142305 NA non-coding downstream 51136 2084785 ~ 2125396 (+)
LOC113545551 NA non-coding downstream 186918 2220567 ~ 2226796 (+)
G142391 NA non-coding downstream 246711 2280360 ~ 2286141 (+)
LOC113523891 ehmt2 other upstream 383276 1615143 ~ 1622790 (+)
G142093 LOC108274838 other upstream 392730 1611511 ~ 1613336 (+)
dus3l dus3l other upstream 446156 1548257 ~ 1559910 (+)
G141825 LOC108274854,LOC108279645 other upstream 796193 938715 ~ 1209873 (+)
LOC113524920 NA other downstream 21382 2055031 ~ 2085878 (+)
LOC113545687 NA other downstream 35589 2069238 ~ 2183053 (+)
LOC117597926 NA other downstream 236401 2270050 ~ 2271586 (+)
LOC117598179 NA other downstream 245430 2279079 ~ 2279887 (+)
LOC117598174 NA other downstream 254449 2288098 ~ 2291206 (+)

Expression


Co-expression Network