LOC113524923


Basic Information

Item Value
gene id LOC113524923
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2036875 ~ 2053264 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911314.2
TGATGTGGGTTCTCACTTTAACCACTCTCCTGCTCTGtatcactgcacacacagctgaaagtGGCTTGTCCATTCAGAGACGCACAGAGGGAAGTAACACCGTCCTCTCCTGTAAAAATGACAGTAATGTAACCTGGAGTAAAGGTGTTGGTGGACGGAGAGCAGACATCCTCACTGCTGAACATGATCCAGATCAGCGAATCATTTTATTAACTAATTTCTCACTCATGATAAAGAATCTGTCTGTGTCAGACTCGGGGATGTACTACCTTAACTCAGTTCCTGCAGTCAAGCTGACTGTGACCCCCATTAAAGTGACTGATGGCAAACCCACCACGGCTAAACGAACACACAGGAAGCCGAAGCGAGAACAGAagtCTACAAAGACGAAACGAGGACCAAAACATGACAGTGATGAAGATGACGATTCAAGTGAGAGAAAAGCACCAGAGAAACGCAGAAAACATGAAACTAAACAGAAGCTGGGAAAAACAGACAGTGATGAAGATGACGAttcaagtgagagaaaaacaccagAGAAACGCATAAAACATGAAACTGAACAGAAGCTGGGAAAAACAGAGTTCTCTGCTCTGGTGTTGGTTATCGCTGCCACGTTGGCCGGTGTTGGGCTCGTCATGTTATTGTGGAAAGGAAACTTCCGAACACAGTCTCCTGAACCTTGTGTCACAGAACATTATTACGAAACCATAGACAACATTGCACCAGCTACAACACCAGgcaGTGAGAAGCCATGCAAAACAATTTACGTCCTAGCAGACTATCCAGCAAAACTGAACCCAGAGAAGAAAAACCCAAGTGATGTTTCCTGTTCGACATCAGAGACACTGTGGAGGAAGAATCCGATCTATTAATTGTCTAACTTGAAACACACACGTGTCCAGATCACACCTAGCCCTGTGGAACTACGTCAAAACCAAACACCACACAGCTGAAGTATTTTAAttccagcttgttttttttaaatgtacaattcAGTATTTTGTACAACACAGGATTTTCATTTGTCCTTCTATCAATCTATTTTTTAATCTCGTTAAACGTGTATGTACAACAAACGTGTGTACAGCGACCTTGAGTGTTAGAAAAGTGCTATAAAATtggaacattattattattattattattatagcatttttatcattatcatgTGACCTCCTTTCACTATTCCAGACATTATGTAACATTATGCTCATTATGCTTATATTAATATCtcagtattattaatatttatctcTCATCTGCCACTCAtcctttatttcattattttttgtctgtttttggtTGCTCAAGTTTCCTCATAGTAAAGAa
>XM_034307576.1
TGATGTGGGTTCTCACTTTAACCACTCTCCTGCTCTGtatcactgcacacacagctgaaagtGGCTTGTCCATTCAGAGACGCACAGAGGGAAGTAACACCGTCCTCTCCTGTAAAAATGACAGTAATGTAACCTGGAGTAAAGGTGTTGGTGGACGGAGAGCAGACATCCTCACTGCTGAACATGATCCAGATCAGCGAATCATTTTATTAACTAATTTCTCACTCATGATAAAGAATCTGTCTGTGTCAGACTCGGGGATGTACTACCTTAACTCAGTTCCTGCAGTCAAGCTGACTGTGACCCCCATTAAAGTGACTGATGGCAAACCCACCACGGCTAAACGAACACACAGGAAGCCGAAGCGAGAACAGAagtCTACAAAGACGAAACGAGGACCAAAACATGACAGTGATGAAGATGACGATTCAAGTGAGAGAAAAGCACCAGAGAAACGCAGAAAACATGAAACTAAACAGAAGCTGGGAAAAACAGACAGTGATGAAGATGACGAttcaagtgagagaaaaacaccagAGAAACGCATAAAACATGAAACTGAACAGAAGCTGGGAAAAACAGAGTTCTCTGCTCTGGTGTTGGTTATCGCTGCCACGTTGGCCGGTGTTGGGCTCGTCATGTTATTGTGGAAAGGAAACTTCCGAACACAGTCTCCTGAACCTTGTGTCACAGAACATTATTACGAAACCATAGACAACATTGCACCAGCTACAACACCAGgcaGTGAGAAGCCATGCAAAACAATTTACGTCCTAGCAGACTATCCAGCAAAACTGAACCCAGAGAAGAAAAACCCAAGTGATGTTTCCTGTTCGACATCAGAGACACTGTGGAGGAAGAATCCGctacacatgctacttctgagatgccagtgatcctgac
>XM_034307577.1
TGATGTGGGTTCTCACTTTAACCACTCTCCTGCTCTGtatcactgcacacacagctgaaagtGGCTTGTCCATTCAGAGACGCACAGAGGGAAGTAACACCGTCCTCTCCTGTAAAAATGACAGTAATGTAACCTGGAGTAAAGGTGTTGGTGGACGGAGAGCAGACATCCTCACTGCTGAACATGATCCAGATCAGCGAATCATTTTATTAACTAATTTCTCACTCATGATAAAGAATCTGTCTGTGTCAGACTCGGGGATGTACTACCTTAACTCAGTTCCTGCAGTCAAGCTGACTGTGACCCCCATTAAAGTGACTGATGGCAAACCCACCACGGCTAAACGAACACACAGGAAGCCGAAGCGAGAACAGAagtCTACAAAGACGAAACGAGGACCAAAACATGAGAAACGCAGAAAACATGAAACTAAACAGAAGCTGGGAAAAACAGACAGTGATGAAGATGACGAttcaagtgagagaaaaacaccagAGAAACGCATAAAACATGAAACTGAACAGAAGCTGGGAAAAACAGAGTTCTCTGCTCTGGTGTTGGTTATCGCTGCCACGTTGGCCGGTGTTGGGCTCGTCATGTTATTGTGGAAAGGAAACTTCCGAACACAGTCTCCTGAACCTTGTGTCACAGAACATTATTACGAAACCATAGACAACATTGCACCAGCTACAACACCAGgcaGTGAGAAGCCATGCAAAACAATTTACGTCCTAGCAGACTATCCAGCAAAACTGAACCCAGAGAAGAAAAACCCAAGTGATGTTTCCTGTTCGACATCAGAGACACTGTGGAGGAAGAATCCGctacacatgctacttctgagatgccagtgatcctgac
>XM_034307578.1
TGATGTGGGTTCTCACTTTAACCACTCTCCTGCTCTGtatcactgcacacacagctgaaagtGGCTTGTCCATTCAGAGACGCACAGAGGGAAGTAACACCGTCCTCTCCTGTAAAAATGACAGTAATGTAACCTGGAGTAAAGGTGTTGGTGGACGGAGAGCAGACATCCTCACTGCTGAACATGATCCAGATCAGCGAATCATTTTATTAACTAATTTCTCACTCATGATAAAGAATCTGTCTGTGTCAGACTCGGGGATGTACTACCTTAACTCAGTTCCTGCAGTCAAGCTGACTGTGACCCCCATTAAAGTGACTGATGGCAAACCCACCACGGCTAAACGAACACACAGGAAGCCGAAGCGAGAACAGAagtCTACAAAGACGAAACGAGGACCAAAACATGACAGTGATGAAGATGACGATTCAAGTGAGAGAAAAGCACCAGAGAAACGCAGAAAACATGAAACTAAACAGAAGCTGGGAAAAACAGAGTTCTCTGCTCTGGTGTTGGTTATCGCTGCCACGTTGGCCGGTGTTGGGCTCGTCATGTTATTGTGGAAAGGAAACTTCCGAACACAGTCTCCTGAACCTTGTGTCACAGAACATTATTACGAAACCATAGACAACATTGCACCAGCTACAACACCAGgcaGTGAGAAGCCATGCAAAACAATTTACGTCCTAGCAGACTATCCAGCAAAACTGAACCCAGAGAAGAAAAACCCAAGTGATGTTTCCTGTTCGACATCAGAGACACTGTGGAGGAAGAATCCGctacacatgctacttctgagatgccagtgatcctgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911314.2 True 1332 mRNA 0.40 13 2036875 2048015
XM_034307576.1 False 903 mRNA 0.45 13 2036875 2053264
XM_034307577.1 False 861 mRNA 0.45 12 2036875 2053264
XM_034307578.1 False 816 mRNA 0.46 11 2036875 2053264

Neighbor

gene id symbol gene type direction distance location
LOC113524922 NA coding upstream 3226 2006066 ~ 2033649 (+)
LOC113524921 NA coding upstream 38726 1973532 ~ 1998149 (+)
slc44a4 NA coding upstream 354082 1647724 ~ 1682793 (+)
ehmt2 ehmt2 coding upstream 390326 1622766 ~ 1646549 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding upstream 439117 1590858 ~ 1597758 (+)
LOC113545587 LOC108274833 coding downstream 131459 2184723 ~ 2195601 (+)
lgals17 LOC108274834 coding downstream 153659 2206923 ~ 2217442 (+)
LOC113545586 NA coding downstream 173657 2226921 ~ 2239299 (+)
LOC113545612 NA coding downstream 196222 2249486 ~ 2255836 (+)
LOC117598027 NA coding downstream 204276 2257540 ~ 2259474 (+)
LOC117598183 NA non-coding upstream 14735 2018809 ~ 2022140 (+)
LOC117597929 LOC108274864,LOC108274865 non-coding upstream 33738 1999256 ~ 2003137 (+)
G142164 atf6b non-coding upstream 86528 1947881 ~ 1950347 (+)
G142157 NA non-coding upstream 132441 1903163 ~ 1904434 (+)
G142134 NA non-coding upstream 166366 1869549 ~ 1870509 (+)
G142302 NA non-coding downstream 1735 2054999 ~ 2103929 (+)
G142305 NA non-coding downstream 31521 2084785 ~ 2125396 (+)
LOC113545551 NA non-coding downstream 167303 2220567 ~ 2226796 (+)
G142391 NA non-coding downstream 227096 2280360 ~ 2286141 (+)
G142385 NA non-coding downstream 245720 2298984 ~ 2301918 (+)
LOC113523891 ehmt2 other upstream 414085 1615143 ~ 1622790 (+)
G142093 LOC108274838 other upstream 423539 1611511 ~ 1613336 (+)
dus3l dus3l other upstream 476965 1548257 ~ 1559910 (+)
G141825 LOC108274854,LOC108279645 other upstream 827002 938715 ~ 1209873 (+)
LOC113524920 NA other downstream 1767 2055031 ~ 2085878 (+)
LOC113545687 NA other downstream 15974 2069238 ~ 2183053 (+)
LOC117597926 NA other downstream 216786 2270050 ~ 2271586 (+)
LOC117598179 NA other downstream 225815 2279079 ~ 2279887 (+)
LOC117598174 NA other downstream 234834 2288098 ~ 2291206 (+)

Expression


Co-expression Network