LOC113525100 (LOC108274824)


Basic Information

Item Value
gene id LOC113525100
gene name LOC108274824
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 324146 ~ 329984 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911543.2
CACTGTTCCAGAATGAGCCGATGATCAACAGACAGCAGCAGTGGGAACACACACCCCGAGCGTAGCTGCAAGATCCTATCCTGACCTGACATCTGTACACAATGGCCAGTGAAGATCGTGACACAAACGCAGCTCTGCAGGCTTCAGGAGAGCccactttaaaaaaagcagctaaaaaagcacaaaaacaaatgGATCAGTTATTTAACATCTCACTTCACATCGCTGTAACTGGAGAATCAGGCACAGGAAAGTCATCTTTCATCAACGCAATCAGAGAGATGGACAAAGATGATGAAGGTGCAGCTAAAACTGGAGTTACTGAAACCACAACTGAACCAACACCTTACGAACATCCCACAATGCCCAATGTGATGCTTTGGGACCTGCCTGGAATAGGAACCCCAAAGTTTAAGGCTCGGAAATATCTTAAAAACATGCAGTTCAACAGGTATgatttcttcatcatcatctcatctgaGAGATTTAAAGAGAATGACATCATGTTGGCCAACGagatcaaaaaaagaaaaaagctcttTTACTTTGTGAGGTCTAAGATAGACAACGATATTCGAACAGAAGAAACAAAAACGGGCTTTAATAAGGAAGAAACGCTCTTACAAATCAAAAGTAACTGCCTGGAAAACTTGAAGGAAATTGAAAATCCGAAAGTTTTCCTTATATCCTCAGAGAATATTAAAGCGTTTGATTTTGAAAAGCTGATTGAAACCCTGATGTCAGATCTCCCGCAGCATAAACAGTCTGCTCTACTGCAGTCAGTGCCCATCACCTCTGAGGCTATGctgaagaaaaaagtgaaaatgtttgaGAAAGCAGCATGGGCTGCAGCCCTTTGCTCTGGCATCATTGCAGCAGCTCCAGTACCGGGTCTCTCCGTGGCATGTGATGCCAGTATTTTAGTGGCTTTCTTTACAAGGTGCTACTACTCATTCGGCCTTGATGATAAATCACTTAAAAAACTCTCGGAACGAGTCAACAAGCCACAGTTGGAATCTTTCATAAAATCACCTCTTGTAGTGGCGTTGACAACGAAATCCACCGCGAGACTGTCGCTGTCTGCTTTAGCAGGAGGAGCAGCGCTGGAGTACCTGTGCAGCTTGGTTCCTGGGGTAGGAAGTGCTACGGCAGCTGGGATATCTTTTGTTTGTACATTAACACTTTTGAAGAATGGATTGAAAGAGCTTGAAAATGCAGCACTGAAAGTGCTGATAGAGGCGGGGTTACAGTGACATGGATGAGACAAAGGAATTGGAGCCATTGcagtaataaaaatgcagaacatTCAGAAGCAGAACATATGATTCACCAATTAAaccctttttgtgtttttttgtaaacaaaaagagaTGTGTGCACACGCTGGTTGTGAAACGCGGTATGACGCTGCTTGGTTACaatctgactgaagaatttaccaagaattttatttaggaatcagactgacattagctaaaatgttatccaTGTATTATTATGAATTAGCACTAAAAGACACAGGGTGCTATTCATCTAAACTAACTTTCAAATGGTGTAACTCTAGAAGGTCCTTATGACTCCTGTCAGTGTCTAAATGATGTTCTAGCCTGCAGTAaccagacacatacacacatctctgCTTGTACGAGAGAGAAATCAAAGGCATACGAGTCTCTtgatgcttacaactttgttgtttgtggTCATgttcaagacaaaaaaattcctaacattatttaaaaactaacaGCTACAATATCTTGGTTTGATTATTATACTTTACTGCTTAAACAATCTCAGGAATAACTAGTTGTCTTCCAGCTTACAGTCACTTTCTTTTCCACAGGAATCACAGGAATTGACTTACAGCCTGAatataaacagctgtttttCTATGACCTTTCAGTTTCCAAGTGCAGATTCACACAAAAGCAGCAGCTCTGGATAGGTACACATCACGTGACAGATataaaaacacttcagcttTACTGGGGTTCAGATTTAGAAAGTTAGAAAGCgaatctgatgtttgatatcaCTAGTACATGATATTAGGGTAGGGCTTGGCAGGCTGGAGGAGGTTTTGGTGCTAATATGAAATCTGAGTATCATCAGTGTagcagtgaaaatgaagacCATGGTGGCAAATGATCTGACCAAGGGGCAACATGTAAATAATGAAGAGAGGCCAAGGACTGATCCCTGGGGACGCCATGAGGAACAGGGGAGGATTTATATTTCTCAAGGATTTATATTTCTCAAGAGTAACAAACAGATGTATTAGTAATATAGGAGATGAGCCAGCTGAGCCGGTAACGCCAGTCACAGAAATGAGTGTGTCATGGAAAAGATTTTGACATGCCTGATCTAGACTTCCAACTGAAAGTCTCTGTTTCcaaatttaaaaactttaaaatagcCTGTGCTGACTCCACAGTCTGAGGCGTCTGCAGCTACTACAGACTGCAGTGAAGGATTCGTAGACTAGTGAGGTGTTCCTTAAGACTCTGtttgaatttgatgaagcagcaGGAAACCAGAAACCTcaaatcttttctgtaaatgctcagtgtgtagtgtgtgaggtGTCACACCTCCTGTGACCACCAGAGGGAGCTGAAGCCTCAGTGGAGGAGCAGGTGGCATCTGAGAGCAAATCCAATGCTCTTCTACATCTCCTGTGAGCAGCAGATCAACCACTGGCTGATACCAACTCTGGTAGCTGTtgctaatattttgttgaagttaaaGCTTAATTATGGATATGAGGATCTGCCACGTGCCTAAAAGTAAAAGTGTTGGTGTAAATGTTTTGGTTTAAAcaccattttcacacacagctgacatCAAAACcaaacttcctgttttcttgtAAAGTTGGTGTAAGTTTATATAGCactttgtgtaattttgtgGGAAAACCATTTCAGCTTTGTGATTTTAAACAGTGACTGAAATCAGATCCTGctaaaattgaactgaactgaacagagagagagagagagagaaacagagagagagagagagtctaatGTATGGcacattttttctgatttttttgtattatttattttgtattatttattttgtattatttattgattttctttggTGTACTTAGGTGATGAATGGTGTAAGTCTGTGTGGTTGGAGCTAATTTTAGCTCCTCTGCTGACATCTTCCACTGTATACGTGGTTGCGTATCTTATCCTGTATTGCTTATTGTATGGCTGggtaattgat

Function

NR:

description
PREDICTED: interferon-inducible GTPase 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911543.2 True 3243 mRNA 0.41 2 324146 329984

Neighbor

gene id symbol gene type direction distance location
LOC113525382 gja9 coding upstream 190739 127708 ~ 133407 (+)
fabp10b LOC108274544 coding upstream 196808 115546 ~ 127338 (+)
LOC113525374 LOC108274795 coding upstream 209210 102820 ~ 114936 (+)
gpd1c gpd1c,LOC108274829,LOC107714772,LOC101473153,LOC106522873,LOC107377235,LOC101155171,LOC102800075 coding upstream 235308 67609 ~ 88838 (+)
LOC113525101 NA coding downstream 108043 438027 ~ 444448 (+)
LOC113523903 LOC108274807 coding downstream 1132461 1462445 ~ 1473080 (+)
LOC113523877 NA coding downstream 1166489 1496473 ~ 1505004 (+)
LOC113523893 mterf1 coding downstream 1204883 1534867 ~ 1540467 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding downstream 1260874 1590858 ~ 1597758 (+)
G141679 NA non-coding upstream 13769 298089 ~ 310377 (+)
G141674 NA non-coding upstream 42290 281596 ~ 281856 (+)
G141672 NA non-coding upstream 45163 278343 ~ 278983 (+)
G141669 NA non-coding upstream 51852 272026 ~ 272294 (+)
G141643 NA non-coding upstream 63185 207325 ~ 260961 (+)
G141687 NA non-coding downstream 14285 344269 ~ 445499 (+)
G141694 NA non-coding downstream 25420 355404 ~ 356798 (+)
LOC117598045 NA non-coding downstream 46403 376387 ~ 379127 (+)
G141711 NA non-coding downstream 85290 415274 ~ 502406 (+)
G141722 NA non-coding downstream 148088 478072 ~ 608632 (+)
G141647 NA other upstream 88625 212948 ~ 235521 (+)
G141566 LOC108274831 other upstream 228086 93086 ~ 96060 (+)
G141823 LOC108274854 other downstream 344248 674232 ~ 742201 (+)
G141824 LOC108274854 other downstream 437071 767055 ~ 895584 (+)
LOC117598023 LOC108274854 other downstream 537685 867669 ~ 869091 (+)
G141825 LOC108274854,LOC108279645 other downstream 608731 938715 ~ 1209873 (+)
LOC117598144 NA other downstream 611739 941723 ~ 979635 (+)

Expression


Co-expression Network