LOC113525101


Basic Information

Item Value
gene id LOC113525101
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 438027 ~ 444448 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911544.2
AAGCGCCCACGTGGACGGCGGGAAAAATAATCGGATGACGTCATCTCACTTCGGCTCAAAGAGGTTTACAGCTCAGTCAGTGTTGAGCTTCACTCCTGCAGCTGCTTTTGTGCTCCACACCTGGAAACCCTGTCCACAGGTCTTACAATGAAATCCAGACTGCATTCTTTCAGAAAGTCTCCTGAACCTGATGGCTCACAGcatggtgaggatgtgcagaccaacACTTCAGATGGAGGGATGTCAGGCTCTGTGGGACACGTCACCCCTGTGGACAAACATGATGGAGGACAGCTGAAGAATCTCAAATCCCATAAGTCTGaAAAGAAGCTGCATTATCgttcacagtgtgggaagagcaTCACTCGCAAGCATACGCTCCAACACCAGCgaattcacacaggagagaggcCATATCACTGCGaccagtgtgggaagagttttgccTATAGAAGTGTTCTCATAGCGCACCAGCGAatccacacaggagagaagccgtatgaCTGTTCACtttgtgggaagagttttgctAGTCGAAGTCATCTCAaacaacaccagcgcattcacacaggagagaagccgtatgaCTGTTCACattgtgggaagagttttgctAGTCGAAGTCAACTCAAAgaacaccagcgcattcacactggagagaagccgtatGACTGTTCACATTGTGAGAAGAGTTTTGCTAGTCGACGTCAACTCAAAgaacaccagcgcattcacactggagagaatCCGTATGACTGTTCACattgtgggaagagttttgctGGGCATCGTTGTCTCAAAATACACCAGCGAATTCACACAGGAGAGCAGCTGTATGactgttcacagtgtgggaagagttttgccTATAGAAGTGTTCTCATAGCGCACCAGCGAatccacacaggagagaagccgtatgaCTGTTCACtttgtgggaagagttttgctAGTCGAAGTCATCTCAaacaacaccagcgcattcacacaggagagaagccgtatgaCTGTTCACattgtgggaagagttttgcaAGTCGAAGTCAACTCAAacgacaccagcgcattcacactggagagaagccgtatGACTGTTCACattgtgggaagagttttgcaAGTCGAAGTCAACTCAaacaacaccagcgcattcacactggagagaagccgtatGACTGTgaacagtgtgggaagagttttgctGGGCATCGTTGTCTCAAAAAACACCAGCgaattcacacaggagagaagccgtatcactgtgAACAGTGTGGGATGAGTTTTACTGCCAACGGTTCCCTCAGAGtgcaccagcgcattcacactggagaaaagccgtatcactgcacacagtgcgggaagagttttactTCCCAGAGTACTCTCAaacaacaccagcgcattcacacaggagaaaagccGTATCACTGCACACAGTGCGGGAAGAGTTTTATTCAAAGTTTTTCTCTAAAACTACATCAGCGCATTCACATAGGAGAAAAGCCGTATCACTGCACACAGTGCGGGAAGAGTTTTGCTACCCAGGGTAATCTCAAAATacatcagcgcattcacacaggagaaaaaccGTACCATTGCGACCAGTGCGAGAAGAGTTTTACTCAAAGTGGTTCTCTAAAACTacatcagcgcattcacactggagaaAAGCCATAGTGTGGGGAGAGCTTTACTCAACAGAATCTCCAATCAGTGTGGAATGGGCTTTACTATTTTAAGTCGGTTTATGGCAGATAAGTGCACCAATATGGAGCCATCAGCAGGTGAAGTGAATTTGTCAAGTCAAGGAACGTAACCCTTGATCTGTATATATGATGCagttttgttttgagtttttaaaaaaatagcttttaGTTTTGACTTTGTGCCCGTGAAATCAAAGTTGgtgctttatattttatgacagaATTTTAtcattgatttttaaatgtcaaaGTATTACTTAATGTTtgtataaaaacaatttttagtAAGCCATGTAGCTACAACATTATACCAAGAAACGTGCCTGGATTAGGGCTACCGAGACCTACCTCTGGAGCCAGGCTTGGTGGTGATGTCTGCAGATGAGCATCTGGTGACCAGAACACCCATGTGCCTAggtcagctaaccattaaataGTGAGGTGAGCCATTTTGCAGGCTCATCACATCCGTAATTAAGAGTAGGAGGTCACGTGCACTGCCAGTTGGGCAGCAGGTATGTGCTGGACAGTCCAGTGGACTAGACGCTTAGAAAGGAAACTGGCTTTGGGAATGCAGAAACGTGTATCAGATGCGCTTTGCACAAGGCAAGAAGAAAGCCTTTATGTCACAGAGATTACaatgaaatattcattactTCACATATGGCAGCTTGggaggaagttggggtcagagcataGGGTTAGCCACGATACAGGGCCTCCCTTAAACTGTACAACTTAACCAcaagtgtttttaaatgtttacatttttattaaactacaCAGCAGAAATATAActacatacaaataaaaaccttaTTAATGCAATGTTGTGTTCCAGTTGGGATCCAGCCATgaactgctgctgctcctccacTCAAATGGAGTGGAATTACCTACTTATTAGGAACTTATTAGGAGACAGTTACCCCCAttttattcagttcaattcaattttatttttatagcgcttttaacaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911544.2 True 2688 mRNA 0.45 4 438027 444448

Neighbor

gene id symbol gene type direction distance location
LOC113525100 LOC108274824 coding upstream 108043 324146 ~ 329984 (+)
LOC113525382 gja9 coding upstream 304620 127708 ~ 133407 (+)
fabp10b LOC108274544 coding upstream 310689 115546 ~ 127338 (+)
LOC113525374 LOC108274795 coding upstream 323091 102820 ~ 114936 (+)
gpd1c gpd1c,LOC108274829,LOC107714772,LOC101473153,LOC106522873,LOC107377235,LOC101155171,LOC102800075 coding upstream 349189 67609 ~ 88838 (+)
LOC113523903 LOC108274807 coding downstream 1017997 1462445 ~ 1473080 (+)
LOC113523877 NA coding downstream 1052025 1496473 ~ 1505004 (+)
LOC113523893 mterf1 coding downstream 1090419 1534867 ~ 1540467 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding downstream 1146410 1590858 ~ 1597758 (+)
ehmt2 ehmt2 coding downstream 1178318 1622766 ~ 1646549 (+)
G141675 LOC100526720,LOC100304867,LOC108274859 non-coding upstream 51484 282417 ~ 386543 (+)
LOC117598045 NA non-coding upstream 58900 376387 ~ 379127 (+)
G141694 NA non-coding upstream 81229 355404 ~ 356798 (+)
G141679 NA non-coding upstream 127650 298089 ~ 310377 (+)
G141674 NA non-coding upstream 156171 281596 ~ 281856 (+)
G141722 NA non-coding downstream 33624 478072 ~ 608632 (+)
G141726 NA non-coding downstream 48463 492911 ~ 493418 (+)
G141731 NA non-coding downstream 104902 549350 ~ 606268 (+)
G141738 NA non-coding downstream 144429 588877 ~ 590364 (+)
LOC117598182 NA non-coding downstream 156425 600873 ~ 608245 (+)
G141647 NA other upstream 202506 212948 ~ 235521 (+)
G141566 LOC108274831 other upstream 341967 93086 ~ 96060 (+)
G141823 LOC108274854 other downstream 229784 674232 ~ 742201 (+)
G141824 LOC108274854 other downstream 322607 767055 ~ 895584 (+)
LOC117598023 LOC108274854 other downstream 423221 867669 ~ 869091 (+)
G141825 LOC108274854,LOC108279645 other downstream 494267 938715 ~ 1209873 (+)
LOC117598144 NA other downstream 497275 941723 ~ 979635 (+)

Expression


Co-expression Network