XLOC_005252 (hectd2)


Basic Information

Item Value
gene id XLOC_005252
gene name hectd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16332416 ~ 16380961 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010099
GTCCATGAGGGAAAAGCTGAGAATGTAATACAGTACACGCAACATCTTATGTAGGCTAGTTATTAGCAAAACATGCATAAACTAGTCTGTGTTCACATTTAATCCAATTCTTAATCGACATAGCGTTTTCACTTTTCTATGCGTTATTAttcgatttgttttatattaCCACGACATCCAAGCTGTGATTTTGATGTTACACAACTTTGAGAGTGGAAGGTCTGTGTGTTTAGCTCTAGGAAAGATCCTAATTAGAGGTGTGCAATAAATCTGACTCAGCACAGCACGGCCCCAGTGTTACGTCGATGTAGCGGCCGTATCCAAGTCCGTAACTACAAACCTCATCATCATCCTCAACAACATGGCGCCAGCGTACAGCTGGACCGCGCATAGACGCCACGGCACTACTTCAAGAAGTTACTTCACTCACTAAACGCAGCGTCGCGAAGATTTTTTTGTAGCTTTTCTTTTTGTGTCTcttcttaaaatgtttgtttattctcTTTAGAAAGCAAATAAGCGACTTTTTTGAACATCTTGGGCTCACATACTCACCTGCCTAAGCAGAAAGAACATATCGTTCTGGACCAACTCACAGCTGCTGTATTTCTCGAAGTGAAAGGAAAGTGGGCACTGAGATTTCGCAGACGGTGAAAGTACTTTTTCCGCAAAAACAAGCCATGTAACGGTGCTCGAGAGGCTTTTCTTCATCAGAggacatgcatctaaacatgaGCGAAAATAACTGTCCGCTTGAAGAAAGGGATAGAGACAGACTTCCTCCAATAATAAACCATCAGAACTTGGAGCGTGGACCGAAGCTCCCTTTCCCCTCTTACGGAAGTTTTATCTCCACCTTGAATCACAAAAGAGAGTCAGGCAGCCACAGTTTCTCCTCTCCATTATTTCTACCTGCAGTTAAACAAGTGAGAGAGCTTCCCCCAATATATCCAGATGTGAGACAGAAGCATCGTATCTCTATTGATGTACTCCCTCCAGAGGTGAAGGCTCGTTTTGTCTCAGAGCCCATTATTCCTATTCGAACTAAAACAGCCAAAGAGTTTCAGGACGATGTCGAACGGGCAACTATCTCAGGGGATTGGAAGCACGTCCATGATTTCTACTTGACCACGTTTGACTCTTTTTTGGAACTCAACGGTGCCTTTAAGAAAGAAGCAAATGCTCCCTTCAACACTATTGAAGACTCAGGAATAAACATCAAATTTGTCAATATTGTTTATGATGCTTTACTCCATACGCCTGCGGACACACAGAAGTCAGTCCTGAAGGGAATTATTAATAGCTTATTAAGAGAATGGAAAGGgCCTCGGACAAAGGATGACCTTAGAGCATATTTTGTTCTTGTGCagAACCCTCAGTACACCAGCCCTGCCACATATGTCATCTATGCACACTTACTGAGGCAAATAGCAGCCCTGGCTGAAGCGGACCACCATTTCCTGATGCACTGGTTTAAAAAGCTGCCTCAGAAGCGTTTCAAGCAGCTGGTGGAGCGCTTGCAGCTCTTCATCACCACCCGCCTATTTCCTGCCAAACCAGAGGAGTTGCCGCCCATGGCCAAATGCTCTTGGTGGATTCCCTCGGCCACTAAAGTCCTCTCCCTTCTTAATGCTGCAAACAGCATTTCATCTGCCCCTATCATCCCTTTCACTGATTTCTACAACCTAACATTGGACCACATAGACTTTATGGAGGATTACCACACGTGGCAGGTTCATGGAAATTCAAACAGGTTCACGTTCTGTCAGTTCCCCTTCATCCTGTCCACAGTGGTGAAGAAAGCCATCATCCAGAGAGATTCAGAGCAGCAGATGATCAGCATGGCCAGGCAAACCCTGGTGGACAAGGTCTCTCGCAGGCAGAGGGTGGATATGAGCCTGCTATTTCTCAACATTAAAGTTAGGCGTCTGCAGCTGGTCAGTGACTCACTGGATGAGCTTTCAAGAAAGCGAGCAGACCTGAAGAAAAAACTGAAAGTGACGTTTGTTGGAGAAGCAGGATTGGACATGGGTGGACTCACGAAAGAGTGGTTTCTTCTCCTGATTCGACAGATTTTTCACACAGACTACGGCATGTTCACGTATGTGAAGGAGTCTCAGTGTTATTGGTTCAGCAGCTGGAAATGTGACAACTACTCTGAATTCCGATTGGTTGGAGCCCTTATGGGATTGGCTGTGTACAACAGCATCACACTGGACATCCGCTTTCCCCCATGTGTCTACAAGAAGCTGCTGACCCCGCCCATTGTGCCGTGTGACCTCGACACCCCCGTTGGCATGGCGACCCTCACCCTGGACGACCTCCAGCAGATTATGCCTGATCTTGCTCATGGCCTTGGGGAACTGCTCAGCTATGAAGGAAATGTTGAAGAGGACTTCTATACCACCTTTCAGGTTTTTCAAGAAGAACTTGGAGTGGTCAAGGCCTATAATCTAAAACCAGGAGGGGACAAGATCCCTGTAACCAATCTAAACAGAAAAGAATATGTCCAGCTCTACATTGATTTCCTGCTGAATAAGTCCATCTACAGGCAGTTTGCTGCTTTCTATCATGGTTTTCACAGCGTTTGTGCTTCAAATGCCCTAATGCTCTTAAGGCCAGAGGAGGTTGAGATCCTGGTTTGTGGAAGTCCTAATCTGGACATGGGCTCTCTGCAGCGAGTAGTGCAGTATGAAGGCTACAGCAAGACTGACCCCACCATCCGAGCTTTCTGGGACGTGGTTCTGGCTTTTCCTTTGGAGCTGCAAAAGAAACTGCTCCACTTTACCACAGGAAGTGACCGCGTTCCTGTGGGGGGGATGGCTGACCTCAACTTCAAGATCTCAAAGATTGATGTCTCCACTGACTGGCTGCCGGTGTCACATACGTGCTTCAACCAGATCTGTCTACCTCCATACAAGAGCAAGAAAGAACTGAGGCAAAAGTTAACTATTGCCATTTCAAATGCGGAGGGTTTTGGATTGGAGTAGGTTAAAGATGGGGAtaagatacattttttaaacagggTTGTGCATCAGAATTATATTTGAGAATGTCTTTTAATTCAGAATCACTTAGGCTGCatttttacactgcatggttcaagtgacccaattccagtcttttttttttcagttcggATATGGCCCACATACATATAAGCTAGAATGTGAATTGTGCCCTCATGTTTGCAGTGCAAGCAGGTAcatcagattttcacctgtcagtagctatgtttccatccacctatttaattcattatattattataaaatgtattattgaaaATTGGTTGAtagaaacgccatgatgcgcataaattaaacattttaaattagcaTAAAAAATGCATGCACATAACTGAggaggataaactttttattctataaGAAAAGATTTGCATAAActttgatggaaacacttttaccaaatgaATTTCAGTATGCGCTAGGGCTGTGCAAGTAATCAAAATCGAATCGCAATTTGAAGTGTTGCAATTAGCTAACTGCAAGAGGCTgcgaaataaatatatatattatttcatttccCCCACCTAGAGCAAATGCATGACAGCCGTCTGTGAGTGA
>TCONS_00010100
atgcatctaaacatgaGCGAAAATAACTGTCCGCTTGAAGAAAGGGATAGAGACAGACTTCCTCCAATAATAAACCATCAGAACTTGGAGCGTGGACCGAAGCTCCCTTTCCCCTCTTACGGAAGTTTTATCTCCACCTTGAATCACAAAAGAGAGTCAGGCAGCCACAGTTTCTCCTCTCCATTATTTCTACCTGCAGTTAAACAAGTGAGAGAGCTTCCCCCAATATATCCAGATGTGAGACAGAAGCATCGTATCTCTATTGATGTACTCCCTCCAGAGGTGAAGGCTCGTTTTGTCTCAGAGCCCATTATTCCTATTCGAACTAAAACAGCCAAAGAGTTTCAGGACGATGTCGAACGGGCAACTATCTCAGGGGATTGGAAGCACGTCCATGATTTCTACTTGACCACGTTTGACTCTTTTTTGGAACTCAACGGTGCCTTTAAGAAAGAAGCAAATGCTCCCTTCAACACTATTGAAGACTCAGGAATAAACATCAAATTTGTCAATATTGTTTATGATGCTTTACTCCATACGCCTGCGGACACACAGAAGTCAGTCCTGAAGGGAATTATTAATAGCTTATTAAGAGAATGGAAAGGgCCTCGGACAAAGGATGACCTTAGAGCATATTTTGTTCTTGTGCagAACCCTCAGTACACCAGCCCTGCCACATATGTCATCTATGCACACTTACTGAGGCAAATAGCAGCCCTGGCTGAAGCGGACCACCATTTCCTGATGCACTGGTTTAAAAAGCTGCCTCAGAAGCGTTTCAAGCAGCTGGTGGAGCGCTTGCAGCTCTTCATCACCACCCGCCTATTTCCTGCCAAACCAGAGGAGTTGCCGCCCATGGCCAAATGCTCTTGGTGGATTCCCTCGGCCACTAAAGTCCTCTCCCTTCTTAATGCTGCAAACAGCATTTCATCTGCCCCTATCATCCCTTTCACTGATTTCTACAACCTAACATTGGACCACATAGACTTTATGGAGGATTACCACACGTGGCAGGTTCATGGAAATTCAAACAGGTTCACGTTCTGTCAGTTCCCCTTCATCCTGTCCACAGTGGTGAAGAAAGCCATCATCCAGAGAGATTCAGAGCAGCAGATGATCAGCATGGCCAGGCAAACCCTGGTGGACAAGGTCTCTCGCAGGCAGAGGGTGGATATGAGCCTGCTATTTCTCAACATTAAAGTTAGGCGTCTGCAGCTGGTCAGTGACTCACTGGATGAGCTTTCAAGAAAGCGAGCAGACCTGAAGAAAAAACTGAAAGTGACGTTTGTTGGAGAAGCAGGATTGGACATGGGTGGACTCACGAAAGAGTGGTTTCTTCTCCTGATTCGACAGATTTTTCACACAGACTACGGCATGTTCACGTATGTGAAGGAGTCTCAGTGTTATTGGTTCAGCAGCTGGAAATGTGACAACTACTCTGAATTCCGATTGGTTGGAGCCGTATCCTTTCATTTTCCTGCAGTTTATACAGTATAG
>TCONS_00010101
CAGCGTACAGCTGGACCGCGCATAGACGCCACGGCACTACTTCAAGAAGTTACTTCACTCACTAAACGCAGCGTCGCGAAGATTTTTTTGTAGCTTTTCTTTTTGTGTCTcttcttaaaatgtttgtttattctcTTTAGAAAGCAAATAAGCGACTTTTTTGAACATCTTGGGCTCACATACTCACCTGCCTAAGCAGAAAGAACATATCGTTCTGGACCAACTCACAGCTGCTGTATTTCTCGAAGTGAAAGGAAAGTGGGCACTGAGATTTCGCAGACGGTGAAAGTACTTTTTCCGCAAAAACAAGCCATGTAACGGTGCTCGAGAGGCTTTTCTTCATCAGAggacatgcatctaaacatgaGCGAAAATAACTGTCCGCTTGAAGAAAGGGATAGAGACAGACTTCCTCCAATAATAAACCATAACTTGGAGCGTGGACCGAAGCTCCCTTTCCCCTCTTACGGAAGTTTTATCTCCACCTTGAATCACAAAAGAGAGTCAGGCAGCCACAGTTTCTCCTCTCCATTATTTC

Function

symbol description
hectd2 Predicted to enable ubiquitin-protein transferase activity. Orthologous to human HECTD2 (HECT domain E3 ubiquitin protein ligase 2).

GO:

id name namespace
GO:0016740 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-100405-3 Predicted to enable ubiquitin-protein transferase activity. Orthologous to human HECTD2 (HECT domain E3 ubiquitin protein ligase 2).

Ensembl:

ensembl_id ENSDARG00000061194

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010099 False 3587 mRNA 0.44 21 16332416 16380961
TCONS_00010100 False 1497 mRNA 0.46 14 16357238 16380242
TCONS_00010101 True 538 mRNA 0.44 2 16378956 16380593

Neighbor

gene id symbol gene type direction distance location
XLOC_005251 kcnj19b coding downstream 247581 16062560 ~ 16084835 (-)
XLOC_005250 NA coding downstream 472547 15857732 ~ 15859869 (-)
XLOC_005249 acbd4 coding downstream 712326 15568761 ~ 15620090 (-)
XLOC_005248 hexim1 coding downstream 765312 15565344 ~ 15567104 (-)
XLOC_005247 NA coding downstream 882158 15445574 ~ 15450258 (-)
XLOC_005253 pcgf5b coding upstream 24637 16405598 ~ 16435150 (-)
XLOC_005254 rpp30 coding upstream 65267 16446228 ~ 16452200 (-)
XLOC_005255 CABZ01044816.1 coding upstream 112391 16493352 ~ 16493468 (-)
XLOC_005256 HTR7 coding upstream 141511 16522472 ~ 16524727 (-)
XLOC_005257 si:dkey-269i1.4 coding upstream 174642 16555603 ~ 16558106 (-)
XLOC_005246 NA non-coding downstream 1088416 15242567 ~ 15244000 (-)
XLOC_005244 NA non-coding downstream 1206367 15125409 ~ 15126049 (-)
XLOC_005243 NA non-coding downstream 1212303 15117887 ~ 15120113 (-)
XLOC_005258 FO704724.2 non-coding upstream 191234 16572195 ~ 16572309 (-)
XLOC_005260 BX465840.1 non-coding upstream 217782 16598743 ~ 16598857 (-)
XLOC_005263 BX465840.2 non-coding upstream 273720 16654681 ~ 16654795 (-)
XLOC_005265 BX322603.1 non-coding upstream 362091 16743052 ~ 16746547 (-)

Expression


Co-expression Network