lamb4 (lamb4)


Basic Information

Item Value
gene id lamb4
gene name lamb4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17507860 ~ 17525781 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918617.2
tCTACGTTCtcaggtgttcaggtgtgtcTTTACATGCTTCAACCTTTACAGTGATTGCTTCACAATCCATTACCGCCTGCTGCATGGACATGGAGGGAAAAATTGGTAGAcactgaatgaactgaatgcaCAGGATCTGTTCTATTTAATATCCCCTGGTTTTCACAGCCAAAGCAACAATGGGCCAAAGGTGGATGTCTGCAGTGCTGCTCCTTTttctgGTGGTGCCAGCTCACTTGGAGGAAGAATGTGAGGGGAGCTCATGCAACCCCACCCTGGGTGATCTTATGGTGGGCCGTGCTGCTCAACTCTCTGCCTCATCCACCTGTGGCCTAAATGGGCCCCAGAACTATTGCATCCTGGGATACCTGGAGGATGAGcaaaaatgtttcagctgtgacTCAAGGAGCCCCTACAATCGATACAACAACCCTAATAGCCATCGAATTGAAAATATCATTACCACCTTTGAGCCAGAGCGAAAGATGAAATGGTGGCAGTCTGAGAATGGTGTGCATCAAGTCAGCATTCAACTAGACTTGGAGACCATGTTTCAGTTTAGCCATTTAGTCATGACATTCAagAGTTTCAGACCTGCTGCAATGCTGATGGAGAGGTCAAAGGATTTTGGTCGCACTTGGAAAGTGTTTCGATACTTCTCTGCAGACTGTGCTACACACTTCCCCAGTATCTCAGAAGGCCCAGCAGAAACTATAGATGACCTCATCTGTGACAGCCGCTACTCTGGAGCTGAGCCTTCTACTGACGGCGAAGTGGTGTTAAAGGCTTTGGACCCCAACTTTCATATTGAAAATCCATTTGACCCTACTATTCAAGAGCTCATCACCATGACTAACCTGCGAGTAAACTTTACACGTTTACTCACACTGGGTGATGACTTGTTGGGGCGGAAGAGGAGGAACCCACAGGAGAAATACTACTACGCCCTGTATGAGATGGTGGTCAGAGGGACCTGCTTCTGCAATGGCCATGCCAGCCAGTGTATGCCTGTTTATAACACACGCGGAGATACCTTGAATGAACCTGGCATGGTTCATGGGAGATGTGTGTGTCAGCATAACACCATGGGGAACAACTGTGAGAAGTGCCAAGATTTTTACAATGATGCCCCCTGGAGGCCGGCTGGAAGCACTGACCCATATGTTTGCAGAaGGTGCAACTGCAATGGCCACTCTGAGCGATGTCACTTTGACCTACAGCGCTACATAACCACTGGGCAGGtcagtggtggtgtgtgtgatgactgcCAAAACAACCGCATGGGCGCTCAGTGTGAGCTGTGCAAGCCACACTACTACAAGGACCCTCTGCGTTCTCTAAATGATCCTTATGCTTGTATACCTTGTGCCTGCCACTCCGCAGGGTCTGTAGATGGTGGGTTGTGTGATCCAGTGAGTGGTCAATGCAAGTGTAAGCAGAATGTAGAGGGTGAGCGCTGTGACCGGTGCAAGATTGGATTCTATAGACTCAGCCAGGAAGACCCCAATGGCTGTCAGAGGTGTATGTGTAACTTCTTGGGCACTGTAAGCACCTCCCCATGTGACCAGAACACAGGCCAGTGTATTTGTGACCCCTTGGCCCATGGACCAGAGTGTGACCAGTGTGTAccaGGATACTGGGGACTAGGAAATACAGTCTATGGTTGTCTACCTTGCGACTGTGACATAGGAGGAGCCTTCACTACTCTGTGTTCCTCAGATAGTGGCCAATGTCAGTGCAGAGCCAATATGGTGGGACTTCGCTGTAGTGAACCTGCCCCTGGTTACTTCCTGGCCCCTCTTGATTTCTATCTCTATGAGGCTGAAAATGCTGCTCCTCTGGACACCAAATGCTCCTCTGACCTGGTTAGACCCGATGCTTCTCCTGTACCTCCCCTGTATCCTACTGCATCTCGTCCACTTCCATACTGTCCCCCAGGAACCATAGCTCGCGAGCCTACAACACAGTCTTATTACCATCCTGAGCCTACAGTGCAGGAGCCTTATGACCCCTCTGAACCTTCTATATATGAGAATTCTTGGCCTCCTGTAGCATATCAAACTCCGCCTGCGGCTGTCACTCTGCCTAGCTGTGTGAACTACTTCAGAAGCAGAGGCTATGATGTTGAGTTCAGGGATGGGAGATTTGTGGTGGTTAAGCGTGAGAGCCGCCGAAAAAGAAGACAAGGCCAGAGCACCATTCCTCTGCAACCAGGATCCCTCCATCAGGTCATCCTACGACCACGTACCCCAGATGAACCTATTGCTTGGACAGGACCAGGAGTTGTGCGGGTTCAAGATGGCGCAGGACTCCGATTCATTGTCACCAACATCCCGTTAACTCTTAACTATCATCTTATCATTCGCTATGACACACagtaCACAGATGATTGGACAGCCAGTGTAAAAATTGTGCCATTAGGATCTCATGATGAAAACTGTCCATTTGATCCATCAGAGAAAACTTTTATGCTTCCTAGCACTAGCAGGGCAGCCATGTTGGATCCTTCTGTATGTCTCAGCTCTGGCGTGCGGTACTATGTGGATATCACATTCGAAAATCCTGACCCTTACTGCAGCTCACATATTCTAATTGATTCtATGGGACTTATTCCAAAGATGGAGTCTCTGCCAAATTTCTGCTCTGATGCAGCCCTAGCTCAGTACCAGCAGTATCGCTGTGTGGAGTTGGGTGCACAGGCAGGAGAACATACCCTCCCTGAGGTGTGTGAAAAACTGGTTGCCAGCATGTCAGCATACATCCATAATGGTGCAATACCTTGTAGATGTAATCCTGAGGGGTCATTCAGTTCATCCTGCAGTAAATTTAGAGGACAATGTGACTGCAAACCCAATGTGGTCGGCCGCTGCTGTGATACCTGTGCCCCTTTGACCTATGGGTTTggacaaaatggctgctcacCATGTAACTGTGAGCCATCGGGTTCCAAAGCTGAGTTCTGTGACCATAAAACCGGACAGTGCCAATGCCATAATGGGGTCACAGGCCGACGATGTGACGGGTGTCTGCCCGGATACTATGGTTTTCCTAACTGCAGACGTTGCCAGTGTAATGGGCTGGCTGACATCTGTGAGCAGATTACTGGAGTCTGTCTAAACTGCAAGGGGCATTCAACTGGGCCCAACTGTGAAAGGTGTGTTGAAGGTTACTTTGGTGATCCTGTAGTGAGGGAACCCTGCAAGCCATGCCTGTGTCCAGACGTGAAAGGCAGCGGCCGTTTCTTTGCCCGCTCCTGCAGAAAGGACGCAAATTCTCTTACCCTGACCTGTCAGTGCATGACAGGGCATCAAGGATTACACTGTGATAAGTGTGCACCTGGTTACTACGGTAACCTGCTTTTGCCAGGCGCTACATGCAAAGAGTGTCCCTGCAACAACAACATCGATCCCAATGATGGCGAGGCATGTGATGCTTTAACTGGCAAGTGCCTCCGCTGCTTGCATAACACTTTTGGGCCTCAGTGCCAGACCTGTAAACCAGGATACTACGGCAATGCACTGCTCCAGGATTGCAGAGaatGCTCATGTGACCGGCAGGGCACAGACGTGACTAAATGCCCACTGGGCAGCCCCTGCATATGTAATGAGGTGACTGGGCAGTGCCCATGTCGTCGTGGTGTGGTAGGCATTCAGTGTGATCGTTGTGAGGATGGATACTGGAATCTGAGTGGAAGGTCTGGGTGTCAGCCCTGTAACTGTCACACAAGCCACTCTGTCAGCAATATGTGTGACAAGATTACTGGCCAGTGTCCTTGTGAAACGGGATATGGTGGTAAACAGTGCAAGGAGTGTGCAGCCAATCATTTTGGAAACCCTGACATtcagtgtatatCTTGCGACTGTGACATGCAGGGCTCTATCCACCCAGGCTGTGATCCTGACACCGGCGAGTGTCTGTGTCGGCCTGGAGTAAGTGGCAATTTCTGTGAAAAATGTGCCCCAGGGCATGATCCGGTCTTCCCTGCCTGCGAGCCCTGCCACCCTTGTTACCATCTATGGGGAAGTAATGTCACAGACATCTCACAGGCTATGGAAAACATGCAGTCTTTGCTCTCTAAACATGGAGGAAGTTTGTTACTCAGCGACAAGCAACACCAGGAAAAGATACAAAAGTTGAATGAGAAGCTTAAGAGCCTGGTTAGCATGCTAAGCTATGACCAGATTAATCTGGAAGGCATGGAGAATTTCCTGAATCAAATCAGGAACTTAACAGAAACCACAGATCCAAACACAATTATTATCGATCCATCTAAGCTGCTGGAAACTGAAATTGATAACATTTATAATGAGTTCAAGAGGTTATTGGATAATCtgcaaaagaaaattaaagacaGCCAAAAAATAGATCTAAAAGAGATAAATGACACGCTGGAGAAGATCCGTAAACTTCATACTGACTTCTTGAAAGATGAAGAACGGGTGAAGGCGGCAAGAAATAAGATAGACACTTCCAGGCAGACCCGACAGGACACAAAAAAAGAACTGGCCAAATGCCAGCTGAGGCCCTTGGATGTACTGGAGAAGAAGGTCAAAGGGCTCAGTGTGGCCAAACTTAATGAGGAGATTTGTGGCGCACCAGGTGATGCAGAGTGTGAAAAGTCTGTGTGTGGTGGTGCTCTGTGTGGGAAGTGTGGCGGGCCATCTTGTACAGGAAGTCTGCCTGTCGCCCTCAATGCCACAGACACAGCAAAGAAGATCAAAGCAGGCATTCAAAGCCTCCTCCAAAATCTCACACAGGCAGAAACAAAGATCAAAGAcatcaaaaatgttaataaagatGTGAAAACTAAGGCAGACTACATGATGAATAAAATCATCAAGAGCAAGAATAAGTTTGATAAGGCCAAGAATGACACTAAAAAACTTATAGAGAGTGTCAGGAAATACCTCAGCGCAGAGACAATGGAACCAGAAGACATTGACAAGGTAGCCTCTGCCGTGTTGGCTATTAAGCTTCCTAGTTCTCCAGATGAGATCAAGAGGATGATCCAGGATATTCAGAAAATGATGGAAAACTTCACGCACATTACAGAAGACCTGAAGGACTTGGAGGACCAGGCCAAATTAGCCAAAGACTTGAAAAATCAGGCTGATGAAATCCTaaacagaacTAAGAAGATTGATGTCAGTGACATAGAGAAAGCCCTAAAGGACACTGACCAACTCCATGACAAGATAAAACAGAAGCTGAACAAGACCGAAGACAACAGAAATGTTACCGCTGAATTACTTGACCAGAGTGCCACAAAACTAAAGAATGCTGAAGATAATTTAAACACGCCTCGGACCAAAAAGCTCCAAGAGGAAATTGAGGCTCTGAAAAATAAAACGGAAATGAATCGAGCTCAGGCTTTGGAGGCCAAAACTGCAGCCGATGCAGCATTAGCCAATGTTACAGATGCTAACAAGGATCTTGAGGAAATAGAAGAACAGTTAAAAAAACTGAGAAACAACACTCAGGGTCTAAATGATACAAGAACTGAGCACCTGAAGAACATAACAATGGAGGCTGAAAATATGGCAAAAgatgttgaaaataaaatgaagcaaatCGAAGTCTTGGAGGAAAGGATTCAAAATGCAGTACaacataaaatgaataaaatgaaagaacTGGAGGTTCTGTTGGCAGAGGCGATGAGCTTGAAGGAATATATTGTTGAAAAAGTGGACAATTATTCGCAGTGTGGCACCTAAGCCTGCAGATGTCTCCGGCTTCACCCCACCCAGATGCAATGCTGTATGTGCAGTCTTGATAACTTTAGCTCTTATTTTGGTCTTGCTAAAAGACAGATTCTTCATTGGTGGTACAGACTTTCTGTGTGTGCTATATTAACCACATAGTATCTGAATCAGTTTCAACACCAAAGACTGTATAGAAGAGAGCAAAAATAATTATCTGTTATCATGCAGATTGTAGAATATTTCAGGAACTATCTATATAGTGATTTTAGTACATTTCTTTGTtatcttttgttttgtcataaATAACTACAGCCATCTCTTAAATTAAGATACTGTTTAATCAGTGTGCTAGGTGGTAGGTTTTTTTGAATATAtcttctttgtgtgtgtatatatatatatattctaattccttgtgtgtgtgagcacatttggcaataaaagctctttctgattctgatatatATTcgtatattttaatatgataatatCTGTAACTCTATTATCTTTTAGAACTTCATGAATAAGGGGTCCTTGTTATTGTAGCATGGCAATTGTC

Function

symbol description
lamb4 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in basement membrane; extracellular region; and membrane. Predicted to be part of laminin complex. Is expressed in several structures, including central nervous system; head; median fin fold; notochord; and otic vesicle. Orthologous to human LAMB4 (laminin subunit beta 4).

NR:

description
laminin subunit beta-4-like

GO:      GO:0005578

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918617.2 True 6264 mRNA 0.46 35 17507860 17525781

Neighbor

gene id symbol gene type direction distance location
LOC113529626 LOC108275292,LOC108436907 coding upstream 2964 17499317 ~ 17504896 (+)
ubl7a ubl7a,ubl7,LOC108274434,LOC108436908,LOC107703185 coding upstream 11399 17490835 ~ 17496461 (+)
LOC113529627 NA coding upstream 18497 17481462 ~ 17489363 (+)
LOC113529594 LOC108275015 coding upstream 33947 17468920 ~ 17473913 (+)
scamp5a scamp5,LOC103363822,LOC107395508,LOC108436905,LOC102221013,LOC103466429 coding upstream 40334 17459490 ~ 17467526 (+)
lamb1a lamb1,lamb1a,LOC107662456,LOC107595246 coding downstream 2460 17528241 ~ 17551524 (+)
si:dkey-42p14.3 LOC108274539 coding downstream 36406 17562187 ~ 17564164 (+)
znf800a znf800 coding downstream 50927 17576708 ~ 17594730 (+)
grm8b grm8,grm8b,LOC107659486,LOC107698172,LOC107598887 coding downstream 71292 17597073 ~ 17723081 (+)
pot1 pot1 coding downstream 234537 17760318 ~ 17803798 (+)
G150268 NA non-coding upstream 50725 17456920 ~ 17457135 (+)
G150265 NA non-coding upstream 61400 17446249 ~ 17446460 (+)
G150261 LOC108275011 non-coding upstream 73483 17430143 ~ 17434377 (+)
G150152 sqrdl non-coding upstream 252523 17253667 ~ 17255337 (+)
G150148 NA non-coding upstream 270914 17236641 ~ 17236946 (+)
G150407 NA non-coding downstream 176773 17702554 ~ 17702758 (+)
G150590 LOC108274445 non-coding downstream 306985 17832766 ~ 17840449 (+)
G150592 NA non-coding downstream 385856 17911637 ~ 17912583 (+)
G150609 NA non-coding downstream 388844 17914625 ~ 17915242 (+)
LOC117598020 NA non-coding downstream 605065 18130846 ~ 18139145 (+)
LOC113529564 ano9,LOC108442698 other upstream 1685269 15807990 ~ 15822591 (+)
svip svip other upstream 1782769 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 1855176 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 3678529 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 3730989 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 308456 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 656773 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 1149229 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 1195814 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 1222046 18747827 ~ 18796259 (+)

Expression


Co-expression Network