lrrc10 (lrrc10)


Basic Information

Item Value
gene id lrrc10
gene name lrrc10
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18216233 ~ 18218741 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918635.2
TATAACATGCACGAGGAGGGGCAAGCTAAGCTGAGTATCATCTTTGGCACTCACAGGAGTCTGCAAGCTCAGAGCAAGGCACAGGGAGTGCGGAGTGCAGAGTGCAGGGCAAGAAAACCATCACattctttttgaaaaaaaaaaaaaagatttaatcatCAGGAAGAGAGACTCATACAAGTCTTCAAAAGGAACTTTCTGCAGCTCTTTACTCATCTACTTCATGAAGGGACCATGAGCGTGGGATGGAGTAATGGGAAATGTTATTCGGGGAGCTGTGGCCTTCATTCCATCAGACCGATGCGAGCGATTCTTGGTAGGGGACTTGAAGGAGATGCCGCATGATTGCACCTTGGACCTGAGTAGCCGTCATCTTCATCGCTTTCCCCTTAGAGTATGTGCCTTCAGAGACCTTGTTAAACTTTATCTGAGTAATAACCACTTGAACAGTCTGCCTCCTGAGCTTAATAATCTGGAAAAGCTTCAAATTCTGGCTCTGGACTTCAACTGTTTTGTGGAACTGCCTTTGGTTGTTTGCAGTCTTCGGCAACTTAACATCCTCTACCTTGGGAATAATCAACTTTACAAACTGCCAAAAGAGCTGGGTCAGCTCAGTGAACTAAAGACATTATGGCTAGACAACAACCGCTTTACAAAGTTCCCATCTGTAGTATGTAAGCTTTCCGACCTCAGAACTCTTCATCTGGGTTACAATCGGTTTCGTAGCTTGCCTGGTGAGCTGGCAAGGTTAAAAGAGCTGCGATGTATTTGGTTATCAGGCAACGTCCTGAATAAATTTCCACCAGTGCTTCTTGAAATGCACTGTTTGGAAGTGATTGATGTAGACAGGAACCACATACAGCATTTTCCACCACTTATTCACTTGACAGGGCTTAAGATTATCATCTATGACCATAATCCATGTGTTAATGCACCTTTGGTAGGAGAAGGTGTGAAACGGGTGGGCCGCTGGGCTGACAGTGCTGACGATGGAGATGATGAAGTTGAACGAAAGACAGATGAAGTGTCCATAGAAGAAAAGACAGCTGAAGTGTCCATAGTAGAAAAGACAGCTGAGATGTCCAGAGAGGTGACAGAACAGCTGCCAGAGAACGAGTAAGAGGAACTGTACAACTATGATATTAATGTCTAATATATCCAGTGTAGCAAACAATGAACAGTAATACTCACATATGTTTCTTAGCTGATCttgtaaaagaaaaattctAGATATAACAATGGTTTGTGAAAATATGTTCtctgaaataatgaaagaaacaaTTTAGGATAACTTTAGCTCTCACACTactacacagattttttttatatatataatatgcaaGAACTTACGTTTTTCTGCTTTATGATTccttgatttctgtaaagatatATCATTTCTGTTTTAGAGATTATCTTGAATTAAAATGTATGGGGTATTGAAGGGTATTCTAATGATGAATTGCTAAATTCCAGCAATGTACCTCACCTCCTCAATAATGCATGTGGGAAGTGACAGATTTGGGTCTCCAGTTTAATATAAGACCTTTAATAGGTTTTTAATCATCATTCTTGCTGTTTCTGGTAGCTGGTGGAGTGTTGAGTAGACTACTGTTTTCTGCAAAGATTAACCTCGTTTTAGCAACTTTGTGTGCTGCATTTTTGCCCTCATTAATAGAATTCATAGAAGTATATATGAAGTTACACCAGTAAGCTAACATTCAGATGGGATATTATGTGCATTTGGGATTATTGTCAGCAATGTTTATGAGATTGTCACAGCTTCTTTTTGAAGTGTGTTGTTTTCACGAATTGCACAATAAAATGTACCAAATTCCAA
>XM_026918636.2
AATTCATATAACATGCACGAGGAGGGGCAAGCTAAGCTGAGTATCATCTTTGGCACTCACAGGAGTCTGCAAGCTCAGAGCAAGGCACAGGGAGTGCGGAGTGCAGAGTGCAGGGCAAGAAAACCATCACattctttttgaaaaaaaaaaaaaagatttaatcatCAGGAAGAGAGACTCATACAAGTCTTCAAAAGGAACTTTCTGCAGCTCTTTAGGACCATGAGCGTGGGATGGAGTAATGGGAAATGTTATTCGGGGAGCTGTGGCCTTCATTCCATCAGACCGATGCGAGCGATTCTTGGTAGGGGACTTGAAGGAGATGCCGCATGATTGCACCTTGGACCTGAGTAGCCGTCATCTTCATCGCTTTCCCCTTAGAGTATGTGCCTTCAGAGACCTTGTTAAACTTTATCTGAGTAATAACCACTTGAACAGTCTGCCTCCTGAGCTTAATAATCTGGAAAAGCTTCAAATTCTGGCTCTGGACTTCAACTGTTTTGTGGAACTGCCTTTGGTTGTTTGCAGTCTTCGGCAACTTAACATCCTCTACCTTGGGAATAATCAACTTTACAAACTGCCAAAAGAGCTGGGTCAGCTCAGTGAACTAAAGACATTATGGCTAGACAACAACCGCTTTACAAAGTTCCCATCTGTAGTATGTAAGCTTTCCGACCTCAGAACTCTTCATCTGGGTTACAATCGGTTTCGTAGCTTGCCTGGTGAGCTGGCAAGGTTAAAAGAGCTGCGATGTATTTGGTTATCAGGCAACGTCCTGAATAAATTTCCACCAGTGCTTCTTGAAATGCACTGTTTGGAAGTGATTGATGTAGACAGGAACCACATACAGCATTTTCCACCACTTATTCACTTGACAGGGCTTAAGATTATCATCTATGACCATAATCCATGTGTTAATGCACCTTTGGTAGGAGAAGGTGTGAAACGGGTGGGCCGCTGGGCTGACAGTGCTGACGATGGAGATGATGAAGTTGAACGAAAGACAGATGAAGTGTCCATAGAAGAAAAGACAGCTGAAGTGTCCATAGTAGAAAAGACAGCTGAGATGTCCAGAGAGGTGACAGAACAGCTGCCAGAGAACGAGTAAGAGGAACTGTACAACTATGATATTAATGTCTAATATATCCAGTGTAGCAAACAATGAACAGTAATACTCACATATGTTTCTTAGCTGATCttgtaaaagaaaaattctAGATATAACAATGGTTTGTGAAAATATGTTCtctgaaataatgaaagaaacaaTTTAGGATAACTTTAGCTCTCACACTactacacagattttttttatatatataatatgcaaGAACTTACGTTTTTCTGCTTTATGATTccttgatttctgtaaagatatATCATTTCTGTTTTAGAGATTATCTTGAATTAAAATGTATGGGGTATTGAAGGGTATTCTAATGATGAATTGCTAAATTCCAGCAATGTACCTCACCTCCTCAATAATGCATGTGGGAAGTGACAGATTTGGGTCTCCAGTTTAATATAAGACCTTTAATAGGTTTTTAATCATCATTCTTGCTGTTTCTGGTAGCTGGTGGAGTGTTGAGTAGACTACTGTTTTCTGCAAAGATTAACCTCGTTTTAGCAACTTTGTGTGCTGCATTTTTGCCCTCATTAATAGAATTCATAGAAGTATATATGAAGTTACACCAGTAAGCTAACATTCAGATGGGATATTATGTGCATTTGGGATTATTGTCAGCAATGTTTATGAGATTGTCACAGCTTCTTTTTGAAGTGTGTTGTTTTCACGAATTGCACAATAAAATGTACCAAATTCCAA
>XM_026918637.1
TTTCTGCAGCTCTTTAGGACCATGAGCGTGGGATGGAGTAATGGGAAATGTTATTCGGGGAGCTGTGGCCTTCATTCCATCAGACCGATGCGAGCGATTCTTGGTAGGGGACTTGAAGGAGATGCCGCATGATTGCACCTTGGACCTGAGTAGCCGTCATCTTCATCGCTTTCCCCTTAGAGTATGTGCCTTCAGAGACCTTGTTAAACTTTATCTGAGTAATAACCACTTGAACAGTCTGCCTCCTGAGCTTAATAATCTGGAAAAGCTTCAAATTCTGGCTCTGGACTTCAACTGTTTTGTGGAACTGCCTTTGGTTGTTTGCAGTCTTCGGCAACTTAACATCCTCTACCTTGGGAATAATCAACTTTACAAACTGCCAAAAGAGCTGGGTCAGCTCAGTGAACTAAAGACATTATGGCTAGACAACAACCGCTTTACAAAGTTCCCATCTGTAGTATGTAAGCTTTCCGACCTCAGAACTCTTCATCTGGGTTACAATCGGTTTCGTAGCTTGCCTGGTGAGCTGGCAAGGTTAAAAGAGCTGCGATGTATTTGGTTATCAGGCAACGTCCTGAATAAATTTCCACCAGTGCTTCTTGAAATGCACTGTTTGGAAGTGATTGATGTAGACAGGAACCACATACAGCATTTTCCACCACTTATTCACTTGACAGGGCTTAAGATTATCATCTATGACCATAATCCATGTGTTAATGCACCTTTGGTAGGAGAAGGTGTGAAACGGGTGGGCCGCTGGGCTGACAGTGCTGACGATGGAGATGATGAAGTTGAACGAAAGACAGATGAAGTGTCCATAGAAGAAAAGACAGCTGAAGTGTCCATAGTAGAAAAGACAGCTGAGATGTCCAGAGAGGTGACAGAACAGCTGCCAGAGAACGAGTAAGAGGAACTGTACAACTATGATATTAATGTCTAATATATCCAGTGTAGCAAACAATGAACAGTAATACTCACATATGTTTCTTAGCTGATCttgtaaaagaaaaattctAGATATAACAATGGTTTGTGAAAATATGTTCtctgaaataatgaaagaaacaaTTTAGGATAACTTTAGCTCTCACACTactacacagattttttttatatatataatatgcaaGAACTTACGTTTTTCTGCTTTATGATTccttgatttctgtaaagatatATCATTTCTGTTTTAGAGATTATCTTGAATTAAAATGTATGGGGTATTGAAGGGTATTCTAATGATGAATTGCTAAATTCCAGCAATGTACCTCACCTCCTCAATAATGCATGTGGGAAGTGACAGATTTGGGTCTCCAGTTTAATATAAGACCTTTAATAGGTTTTTAATCATCATTCTTGCTGTTTCTGGTAGCTGGTGGAGTGTTGAGTAGACTACTGTTTTCTGCAAAGATTAACCTCGTTTTAGCAACTTTGTGTGCTGCATTTTTGCCCTCATTAATAGAATTCATAGAAGTATATATGAAGTTACACCAGTAAGCTAACATTCAGATGGGATATTATGTGCATTTGGGATTATTGTCAGCAATGTTTATGAGATTGTCACAGCTTCTTTTTGAAGTGTGTTGTTTTCACGAATTGCACAATAAAATGTACCAAATTCCAA

Function

symbol description
lrrc10 Predicted to enable actin binding activity. Acts upstream of or within cardiac muscle tissue regeneration; heart contraction; and heart looping. Predicted to be active in cytoskeleton and sarcomere. Is expressed in atrium; cardiac muscle cell; cardiac ventricle; heart; and heart tube. Orthologous to human LRRC10 (leucine rich repeat containing 10).

NR:

description
leucine-rich repeat-containing protein 10-like

GO:

id name namespace
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918635.2 True 1837 mRNA 0.40 2 18216233 18218274
XM_026918636.2 False 1825 mRNA 0.40 2 18216233 18218280
XM_026918637.1 False 1624 mRNA 0.39 2 18216233 18218741

Neighbor

gene id symbol gene type direction distance location
agbl2 agbl2 coding downstream 13608 18184111 ~ 18202625 (-)
ptprz1a ptprz1,LOC108274749 coding downstream 51423 18113006 ~ 18164810 (-)
asb15a asb15 coding downstream 294712 17914613 ~ 17921521 (-)
LOC113530148 hyal4,LOC108436916,LOC108181664,LOC107573489,LOC107752304,LOC107753633 coding downstream 355886 17846961 ~ 17860347 (-)
LOC117597889 LOC108274445 coding downstream 373669 17840112 ~ 17842564 (-)
washc4 kiaa1033,si:dkey-23p11.2,LOC107696292,LOC107678984 coding upstream 9372 18228113 ~ 18245704 (-)
arid3b LOC108275332,LOC108436938,LOC107575848,LOC107752332 coding upstream 99883 18318624 ~ 18338423 (-)
LOC113530128 LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663 coding upstream 121712 18340453 ~ 18347647 (-)
hcn4l hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391 coding upstream 159988 18378729 ~ 18398258 (-)
nptna LOC108274497,LOC108436943 coding upstream 185771 18404512 ~ 18420371 (-)
G150776 NA non-coding downstream 103756 18112252 ~ 18112477 (-)
G150631 NA non-coding downstream 303378 17912640 ~ 17912855 (-)
G150551 NA non-coding downstream 456534 17759421 ~ 17759699 (-)
G150495 grm8b non-coding downstream 517149 17698687 ~ 17699084 (-)
G150469 NA non-coding downstream 560444 17655589 ~ 17655789 (-)
G150834 NA non-coding upstream 36334 18255075 ~ 18255418 (-)
G150854 NA non-coding upstream 82552 18301293 ~ 18302959 (-)
G150875 NA non-coding upstream 87468 18306209 ~ 18306443 (-)
G150891 NA non-coding upstream 119761 18338502 ~ 18338714 (-)
G150925 LOC108275437,LOC108436941,LOC107661438,LOC107696282,LOC107573699 non-coding upstream 154372 18373113 ~ 18376841 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 1746 18204651 ~ 18214487 (-)
LOC113529460 nrg4 other downstream 1157327 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 1987899 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 2224139 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 2496658 15711993 ~ 15719575 (-)
etfbkmt etfbkmt other upstream 84401 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 85897 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 135233 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 206578 18425319 ~ 18428973 (-)
gatd1 pddc1,LOC102788149 other upstream 1073468 19292209 ~ 19295843 (-)

Expression


Co-expression Network