sfxn1 (LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919)


Basic Information

Item Value
gene id sfxn1
gene name LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7401497 ~ 7418528 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918647.2
CGGTGCAGCTCGATGGAGGGCGCTTCATCTCCCCTGTTTAAACAGCAGACAGGCTTCAGCACTGCGAGTGTGTGGACTGCTGAGATTTCAACTGCTGACTACTGAAGCACTGCAGCATGGCGGCCGAGCTCTCCACCTCGATAAACATCAAAGAGCCTCGCTGGGATCAGGGGACCTTCGTGGGCAGAGCCAAGCATTTCTTCACCGTCACAGACCCACGCAACGTTCTGCTGTCTAACGAGCAGCTTGAGAAAGCACGCAGGATCATTCAGGATTACAGACAGGGAGTGGTGACTCCAGGTCTGACAGAAGATGAGCTCTGGAGGGCCAAATACATTTTTGACTCTGCGTTCCATCCAGACACGGGTGAGAAGATGCTGCTGATCGGCCGCATGTCAGCTCAGGTGCCCATGAATATGACCATCACCGGCTGCATGATGACCTTCTACAGGACGACTCCAGCAGTGCTGTTCTGGCAGTGGATCAATCAGTCCTTTAATGCAATAGTCAACTACACCAACCGCAGTGGTGATGCTCCCATTACAGTAAATCAGCTTGGCACGGCGTACGTATCGGCTACGACAGGAGCTGTGGCCACGGCTTTAGGACTCAACTCTCTAGCAAAGCACGTCTCCCCACTTGTAGGACGTTTTGTGCCATTTGCTGCTGTAGCTGCTGCTAACTGTATCAACATTCCGCTGATGAGGCAAAGAGAGCTGAAGCACGGCATTCCAGTGATGGACCAGAACGGAAATCGGTTAGGGGAGTCTTCGAAAGCGGCACAGCAGGCAATCTCACAAGTGGTGATCTCCAGAATCCTCATGGCCTCTCCTGGAATGGcaattccACCATTTTTAATGAACTCCCTGGAGAAGAAAGCATTCCTGAAGAGGTTCCCGTGGATGAGTGCACCCATTCAGGTCGGCCTGGTGGGATTCTGCTTGGTGTTTGCCACTCCGCTGTGCTGTGCGCTGTTCCCACAGAAGAGctcaaTGGCTGTGAGCCGTCTGGAGCCTGAGCTGCAGGAGAAGATCCGCTCAGATCACCCAGGAGTGGAGAGAGTTTACTTCAACAAAGGATTATGAGAGGAAAAAACTCGTCTCCTCCCAACACGGCCATAAAAACCCCTCTCATCTCATCGTGTTTTTACAGCGTGCCAAAGTTCCgttcctctgtctctcctcaaGGACGTCCCGACTCAGCTGTTTCGTAAGATGTCGTTCCTAGTGACAGTTTTTAATCAGGAGAATATTTTGGATGGTGCAGATCTGTGCTAGTGTTAGGAAAGACTATTTGTCTAAAATGGTGCTCTTTCTGAttggctagttttttttttattttatttagtatttgttGATTACAGTGCAGTCTATAAGTACATAAACTTGGATATTTAAGTTTTTTAGTCTCTACACTACAGCAgattggatttgaaatgaaacatcaTGATCATGCTAGCTTTAAATCCAGCTTCTAGGCATCACAGCCTTTTTATACACCATTGCTGGGACCAAAACCACTTTGAATCATTGACGCATCTGTAAATGAAACGTCACGTTTAGTACTTTCAATACATTCGATGACTGCGCTGGAATTATGTTTACTGTCAAACCAAACCATCTCCATGTGCCATCTGTAATAAGGAACAAATATGGTGGTGTATTttctgtcagtgtttttattgcatTGTTGTAATTAGTAATTGATGTTCATGTCTGAATGAAAGCTGCTTTTGACATTAAATTGccaaaaaaagaattaaaagtttactttaaaggtacactaagTAGAAATTTCCACTGATGttcacagtattaaaaaaaaaaaaaaaagtattttaaatatttactttgtgACACAGTCAATTATGGAGCCCCTGAAAGGGCATAgtgtaaattttattaaatatctatatctatctatct

Function

NR:

description
PREDICTED: sideroflexin-1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K23500 SFXN1_3; sideroflexin-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918647.2 True 1925 mRNA 0.45 11 7401497 7418528

Neighbor

gene id symbol gene type direction distance location
LOC113529540 cfap69 coding upstream 1072 7382078 ~ 7400425 (+)
LOC113529730 herpud2,LOC108275212,LOC105897640,LOC107686057 coding upstream 136801 7253320 ~ 7264696 (+)
LOC113547131 LOC108274606,LOC108435620 coding upstream 667583 6692793 ~ 6733914 (+)
LOC117598051 LOC108274605 coding upstream 721328 6679484 ~ 6680169 (+)
LOC113547127 LOC108274605,LOC108435589 coding upstream 722171 6605821 ~ 6679326 (+)
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding downstream 4341 7422869 ~ 7434230 (+)
ccng1 ccng1,LOC107745080 coding downstream 21167 7439695 ~ 7444266 (+)
gabrb2a gabrb2,LOC107554707,LOC107684828 coding downstream 49244 7467772 ~ 7525350 (+)
atp10b atp10b coding downstream 117807 7536335 ~ 7574229 (+)
trnaa-agc_3 NA coding downstream 190513 7609041 ~ 7609113 (+)
G144486 NA non-coding upstream 134582 7239003 ~ 7266915 (+)
trnag-ccc_3 NA non-coding upstream 175949 7225478 ~ 7225548 (+)
LOC113530161 NA non-coding upstream 262125 7132850 ~ 7139372 (+)
G144444 NA non-coding upstream 439559 6958600 ~ 6961938 (+)
G144442 NA non-coding upstream 443333 6957637 ~ 6958164 (+)
G144523 NA non-coding downstream 233 7418761 ~ 7420820 (+)
G144568 NA non-coding downstream 156580 7575108 ~ 7575491 (+)
G144661 NA non-coding downstream 157532 7576060 ~ 7576788 (+)
G144665 NA non-coding downstream 159600 7578128 ~ 7578377 (+)
G144715 NA non-coding downstream 267220 7685748 ~ 7688153 (+)
trnaw-cca_12 NA other upstream 444981 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 448624 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 450075 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 602593 6796972 ~ 6798904 (+)
LOC113547145 NA other upstream 616060 6783516 ~ 6785437 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other downstream 29342 7447870 ~ 7466552 (+)
G145233 LOC107676291 other downstream 1422948 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 3118723 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 3135838 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3876600 11295128 ~ 11306318 (+)

Expression


Co-expression Network