etfa (etfa,LOC107712526,LOC107557988)


Basic Information

Item Value
gene id etfa
gene name etfa,LOC107712526,LOC107557988
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17113754 ~ 17128284 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918650.2
CGGTTGTAGATAACGTGACGCCACATGTAATCTCGCGAGAGGTTGCGGGAAAACCTTGGTAACGGTGTGGGAGAGAGTGAGTGCTGCTGCCGCCGCTGCCATCATGCTCAAAGCTATCACCAAGCCAAACCTCAGGACATTGTCGGGCCTGATCCAGAGGTTTCAGAGCACCCTGGTTGTTGCAGAGCACAACAATGACACCCTCACGCCTATCACTCTCAATGCTATCACAGCAGCCAACAAACTTGGTGGGGAGGTGTCCTGTCTCGTTGCTGGAACAAACTGTGCTAAGgtgGCAGAGCAACTTTCACAAGTTGAGGGAGTGAAAAAGGTTCTGGTTGCACAACATGATGTCTACAAAGGATTTTTACCAGAGGAGTTGACACCTCTCATCTTGGCAACCCAGCAACAATTCAACTTTACACATATCTGTGCTGGAGCATCTGCTTTTGGAAAgAATCTTCTTCCCAGAGTGGCTTCCAAGTTGGATGTTGCTCCGATCTCAGACATCATTGAGATCAAATCCCCTGACACGTTTGTGAGGACAATTTATGCAGGAAATGCCCTTAGCACTGTCAAGTGCAATGAAAAAGTCAAGATCTTCACAGTAAGAGGGACTTCTTTCGAATCTGCTAAACAGGGAGGAAGTGCGACATCAGAACAAGTGTCTCCTGCTGCTCCTGTTGGGATATCTGAGTGGCTGGAGCAGAATCTGACCAAGAGTGACCGGCCGGAGCTCACCAGTGCCAAGGTTGTTGTGTCTGGAGGCAGAGGTCTGAAGAGTGGTGAAAACTTCAAGCTGCTTTATGACCTGGCTGACAAGTTAAATGCTGCTGTTGGTGCCTCTAGAGCTGCAGTAGATGCTGGATATGTCCCCAATGACATGCAGGTTGGGCAGACAGGAAAGATTGTAGCTCCTGAGCTGTACATTGCAGTTGGAATTTCTGGAGCTATTCAGCATCTTGCTGGAATGAAGGACAGTAAGACTATTGTTGCTATCAACAAGGATCCTGAGGCCCCCATCTTCCAGGTTGCCGACTTCGGCTTGGTTGCTGACTTATTCAAGGCTGTCCCTGAGATGATCGAGACTCTGAAGAAGTGAAATTTATTACTCAGCTTCTAACTGGAACATACTCAGGAGCCTCATCTGTAACTGTGCTGGACACTTGCCTTATGAATGAGCTAGGAAATGTCACTCCTCCTGCATTCTTCCCTCCTGATGCACACATCAGGCCTTTCTTTATTTaggtaaagtcttcaggagtcTACATGTCATGTTACTGTATCTAATAACATCATAATGTGGTCAGTATATTAATGATGTCAGATCTAATTTGCCAATAGCATTATGTTTTGGTCTTTGgctctgtgtaacagctacacacactaGCTCTCTATATCAAGTAATAAATATTGACTCTTATCAGTCCGTTTTTagtttgatgtttatttaaagcccgcttcaggaaagaaaaatgtgatacATAATTTTAAAGCAGGTTTGAATTGCTTTCTTTAATGGACATGCTCCTGTATTTCAATGCGATTAGACAAAGTAAGCTAATTTCACACGTAGTTGTATGGTCTGGACTTACAGTTt

Function

symbol description
etfa Predicted to enable electron transfer activity and flavin adenine dinucleotide binding activity. Acts upstream of or within animal organ morphogenesis; mitochondrion morphogenesis; and regulation of fatty acid beta-oxidation. Predicted to be located in mitochondrial matrix. Is expressed in several structures, including alar plate midbrain region; digestive system; musculature system; nervous system; and yolk syncytial layer. Used to study multiple acyl-CoA dehydrogenase deficiency. Human ortholog(s) of this gene implicated in multiple acyl-CoA dehydrogenase deficiency. Orthologous to human ETFA (electron transfer flavoprotein subunit alpha).

NR:

description
electron transfer flavoprotein subunit alpha, mitochondrial-like

GO:

id name namespace
GO:0009887 animal organ morphogenesis biological_process
GO:0070584 mitochondrion morphogenesis biological_process
GO:0031998 regulation of fatty acid beta-oxidation biological_process
GO:0009055 electron transfer activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K03522 fixB, etfA; electron transfer flavoprotein alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918650.2 True 1600 mRNA 0.45 12 17113754 17128284

Neighbor

gene id symbol gene type direction distance location
c2cd4a LOC108275248,LOC108433606 coding downstream 223747 16888337 ~ 16890007 (-)
roraa rora,roraa,LOC108433630,LOC106561150,LOC107703215,LOC106573506 coding downstream 313386 16567295 ~ 16800368 (-)
LOC113530224 NA coding downstream 360473 16753176 ~ 16753281 (-)
ice2 ice2 coding downstream 547752 16547325 ~ 16566002 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding downstream 567484 16540852 ~ 16546270 (-)
scaper scaper,LOC107662441,LOC107712524,LOC107688925,LOC106561156 coding upstream 12131 17140415 ~ 17234857 (-)
ctdspl2a ctdspl2a,LOC108275364,LOC107712523,LOC107589331,LOC107688927,LOC107739078,LOC107557990 coding upstream 108829 17237113 ~ 17248412 (-)
sqor sqrdl,LOC107739076,LOC107557991,LOC107662477,LOC102778185 coding upstream 121254 17249538 ~ 17255164 (-)
galk2 galk2,LOC107557993,LOC107688931,LOC107662478,LOC107589326 coding upstream 155740 17284024 ~ 17291324 (-)
tjp1b LOC108274984,LOC108414298 coding upstream 194914 17323198 ~ 17388941 (-)
LOC117597939 NA non-coding downstream 35669 17075246 ~ 17078085 (-)
G150036 NA non-coding downstream 61242 17028117 ~ 17052512 (-)
G150089 NA non-coding downstream 94571 17018956 ~ 17019183 (-)
G149854 NA non-coding downstream 499338 16612984 ~ 16614416 (-)
G149841 NA non-coding downstream 615293 16496171 ~ 16498461 (-)
G150139 NA non-coding upstream 19617 17147901 ~ 17148608 (-)
G150237 NA non-coding upstream 237166 17365450 ~ 17365787 (-)
G150284 NA non-coding upstream 312589 17440873 ~ 17444825 (-)
G150310 NA non-coding upstream 376002 17504286 ~ 17504936 (-)
G150340 NA non-coding upstream 422806 17551090 ~ 17574660 (-)
LOC113529460 nrg4 other downstream 54848 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 885420 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 1121660 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 1394179 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1884769 15219970 ~ 15228985 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1076367 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1174858 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1176354 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1225690 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 1297035 18425319 ~ 18428973 (-)

Expression


Co-expression Network