LOC113529465


Basic Information

Item Value
gene id LOC113529465
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 9889760 ~ 9893851 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918657.2
aaatactaaaaagaaaattgtagCGCTGGTCAGGCAGAAGCAGTTGAGTGATCGTGGATGTTTGTCCCAGATGAGTCGAGCACAGATGTCATCGTACGTAATTCACACGAGGAGGAACTATGGCGAATGACAAGGATCCCCTGAGTCAGCTGAAGGATCTGGCACAGCTCAAAGATCAACTCGCAGATATTCAGAAAAGAGTGGAGAACGAAGTGCAGGTTGGGATACCACAGGGTGGCTCACTGTTAGCCTCTCCGTTCCTGAAGGGCTTCCTGGCTGGCTATGTGGTGTCCAAATTACGCGCCTCGGCCGTCTTGGGGGTCGCTTTGGGAACTCTTACGGGCATCTACGCTGCACAGACCTATCAGGTGCCGGACATCGAGAGGACCATAAAGGACTATCTGAACTCTTTGAAGAAAGGCCCTAATAATTaacacagtgaaagagagaaggaatCG
>XM_034307686.1
CTAGTTtagctacaaataaaaatgcGTCTGTTTTGCAGGTGAAAATGGTCTAATCATTGATAATGACGGATCCCCTGAGTCAGCTGAAGGATCTGGCACAGCTCAAAGATCAACTCGCAGATATTCAGAAAAGAGTGGAGAACGAAGTGCAGGTTGGGATACCACAGGGTGGCTCACTGTTAGCCTCTCCGTTCCTGAAGGGCTTCCTGGCTGGCTATGTGGTGTCCAAATTACGCGCCTCGGCCGTCTTGGGGGTCGCTTTGGGAACTCTTACGGGCATCTACGCTGCACAGACCTATCAGGTGCCGGACATCGAGAGGACCATAAAGGACTATCTGAACTCTTTGAAGAAAGGCCCTAATAATTaacacagtgaaagagagaaggaatCG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03060 Protein export

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918657.2 True 458 mRNA 0.50 3 9889760 9893851
XM_034307686.1 False 392 mRNA 0.48 3 9889910 9893851

Neighbor

gene id symbol gene type direction distance location
LOC113529571 csf1r coding upstream 16563 9851466 ~ 9873197 (+)
pdgfrb pdgfrb,LOC107754478,LOC107693052,LOC107690880 coding upstream 46347 9798337 ~ 9843413 (+)
LOC113530178 exosc3,LOC107750384,LOC107677356,LOC107697623 coding upstream 121401 9762575 ~ 9768359 (+)
si:ch211-107m4.1 LOC108275330 coding upstream 133765 9745450 ~ 9755995 (+)
LOC113529592 LOC108274483 coding upstream 292040 9587912 ~ 9597720 (+)
slc35a4 slc35a4 coding downstream 299 9894150 ~ 9895344 (+)
ndst1a ndst1,LOC108274691,LOC108430959,LOC102795901 coding downstream 24251 9918102 ~ 9986415 (+)
bicc2 LOC108274692 coding downstream 103437 9997288 ~ 10018933 (+)
etf1a etf1,LOC108275025,LOC108430956 coding downstream 541096 10434947 ~ 10448212 (+)
fbxw11a fbxw11a,fbxw11,LOC108275024,LOC108430955,LOC105893085,LOC107655672,LOC107588312,LOC107660901,LOC107754486,LOC107747095 coding downstream 558496 10452347 ~ 10471279 (+)
G145745 NA non-coding upstream 62477 9793274 ~ 9827283 (+)
LOC117598008 NA non-coding upstream 151249 9736278 ~ 9738511 (+)
G145711 NA non-coding upstream 158098 9726364 ~ 9731662 (+)
G145712 NA non-coding upstream 166061 9722227 ~ 9723699 (+)
G145368 NA non-coding upstream 785680 9103746 ~ 9104080 (+)
G145841 NA non-coding downstream 9166 9903017 ~ 9906823 (+)
G145842 NA non-coding downstream 13946 9907797 ~ 9913831 (+)
G145950 NA non-coding downstream 210134 10103985 ~ 10104188 (+)
LOC113530164 NA non-coding downstream 276864 10170715 ~ 10190193 (+)
G145966 NA non-coding downstream 314153 10208004 ~ 10211495 (+)
G145233 LOC107676291 other upstream 1047494 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 2423208 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 2933244 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 2936887 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 2938338 6951072 ~ 6951422 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 643400 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 660515 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 1401277 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 1701648 11595499 ~ 11597970 (+)
G147542 NA other downstream 3023068 12916919 ~ 12917254 (+)

Expression


Co-expression Network