slc17a6a (slc17a6,slc17a6a,LOC107555703,LOC107677426,LOC107570095)


Basic Information

Item Value
gene id slc17a6a
gene name slc17a6,slc17a6a,LOC107555703,LOC107677426,LOC107570095
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15759626 ~ 15769464 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918671.2
GTGTGCGCGCAAACACAGGGCTGACGGAAAGCGCGCGCGCTCCCGCGCTCCTCCGCTCCGAAGGCGCGCGTGTCGGTTCGAGTGAAAGGGCAGTGCTGTGCTCCATCTCCAGCGCGCTAAATGATTGTCTTTCCACCAAAATATGACACGTCTCTGCTTGTAGCGTTTAAAAAGGGGCAATGGAAAGGTTTAGGCGCAGCGAGCGTGGAGAAGCGGCGAGGATGCACTGAACTCGAGGGAAAGGAAAACTTAAACGTCTGTGTGGCTGTGAAGGAAGACCATAAGTGAGTGCATGCAGGTGTAGGCGTTTTGTACAGCTCATCCTCACCTACAGTGGGATTACAAACCGAAATCCAATTATACCTGATCGAACAAACCCATACATCCAGTCACCCCATTCCAGGATTATGGAATTTCACTGAGTGTGATATTAAGCGCGTGCTTGGATATGGATACGGTGAAAGAGCGAGTTTTAGCCCCCGGGAAGGCGGGACTGAAGAATCTGGCGGGGAAGACCCTGGCACATATGCAAAGAGTGATTGAGAAGAAGCAGAAAACGGGTGAAGTGATCGAGCTGACGGAAGATGGCCGCCCCAAAGAGATCAGTGAGAGGAAGGCGCCGCTGCTCGACTGCGCGTGCTTCGGGCTGCCTCGCCGCTACATCATCGCCATCATGAGCGGCCTGGGCTTCTGCATTTCCTTCGGAATCCGCTGCAACCTCGGGGTTGCGATCGTGGACATGGTCAACAACAGCACCGTGCACCAGGGCGGCAAGATCATCATCAAAGAGAAAGCGAAGTTTAACTGGGATCCGGAGACGGTGGGGATGATCCACGGCTCGTTCTTCTGGGGTTACATCGTGACCCAGATCCCTGGAGGGTACATCTCCTCCAGACTGGCAGCCAACAGGGTGTTCGGGGCCGCCATCCTGCTGACGTCAACACTCAACATGTTTATTCCGTCGGCGGCGCGCGTGCACTACGGCTGTGTCATGTTTGTGAGGATATTACAGGGCCTGGTGGAGGGCGTGACCTATCCAGCATGCCATGGTATCTGGAGCAAATGGGCTCCGCCATTAGAGAGAAGTCGCTTGGCAACCACGTCTTTCTGTGGTTCCTATGCTGGTGCTGTGGTAGCCATGCCTCTGGCTGGGATCCTTGTGCAGTATTCAGGCTGGTCATCGGTCTTCTATATTTATGGGAGTTTTGGTATTGTCTGGTATGTGTTCTGGATCCTGGTGGCTTATGAGAGCCCAGCAGAACACCCCACTATTACGGAGGAAGAGCGACTTTACATAGAGGAGAGCATTGGAGAAGGGGCTAAACTGCTTGGGGCAACTGAAAAATTTAAGACACCCTGGAGGAAGTTCTTCACTTCGATGCCTGTCTATGCAATTATTGTGGCCAATTTCTGCAGGAGCTGGACCTTCTACCTCCTGCTCATTAGCCAGCCCGCGTACTTCGAGGAGGTGTTTGGTTTTGAGATCAGTAAAGTTGGCATGCTGTCTGCTCTGCCTCACTTGGTCATGACCATCATAGTGCCGATAGGAGGCCAACTTGCTGACTTTCTACGCAGCAATAACATCATGTCCACCACTAATGTCCGGAAGATAATGAATTGTGGAGGATTTGGGATGGAGGCAACACTGTTGTTGGTAGTTGGTTACTCCCACAGTAAAGGTGTAGCCATCTCATTTCTGGTACTAGCAGTGGGTTTCAGTGGCTTTGCCATATCAGGTTTTAATGTGAACCACCTGGACATTGCGCCCAGGTATGCCAGCATACTGATGGGCATCTCCAATGGAGTTGGCACACTTTCTGGAATGGTCTGCCCTCTCATAGTGGGTGCCATGACCAAAAACAAGACCCGGGAAGAATGGCAAAACGTGTTCCTTATTGCCTCCTTGGTCCATTATGGTGGTGTAGTGTTCTACGGGATCTTTGCTTCAGGCGAGAAGCAGCCATGGGCGGATCCAGAGGAAACCAGCGAGGAGAAGTGCGGCTTCATTGATGAAGATGAGCTCGCTGAAGAGACTGGTGACATTACACTTAGTCATGCTCCATTCGGAGCCCAGGGAGCCTTTGGGGCTCCCCCGAAATCATACGGGGCCACAAATCAGCTGAACGGGGGATGGGCAGGAGGCTGGGAGAAAAGAGAGGAGTTCATCCAGGAGGGAGCTGTGCAGGTCTATCCTCAGGGTGGAGATGGGTACTCATAGGACACAGGGGCTGGTTACATGAAGGAAGAATGTCACTACAGTTGTAAAATCCTAAAAGAATTAAAAGTTTGTGGTGACTGAACTAAAATGTACCAGCATACTATAAATGTATCGCAGGGATGCCTCAGATAACAAAGCATGGTTCATGCAGATTATGCAGGAGGTAGGGAAGATTAAACcctgattatatatataaatattttataactaCAGTTAGAAAAGTATTTatgtaataaacaataattttaaattcaatCTTAAAATGACAATGTTTCTTCTGTAACATAATAGCTTGAACATTAGTACAAGTCAGTataagtttaaatatttataagtgGAACTTAAATAAGTTCCACTTTTATAAGttcaattaaatatatatgatgTACTATATACTATTAAACATTGATATGATTTAGAGATGGATATTTTAGCAGCTGCACCTGCCCTATAGGTCACTGTAGGCACACAATTAATAACTATAGCCTAACTTTTGCACAGTGTGTCAGCTTCCATCCTCATCCATCAGTGGAAAAGGACCACTATAGGACCACTATAGGACCACTGTAGGTGGTGGACAATTCTCAGTAATGGCAGTGATATCTTAGTGTTGCCCTTTTGATGaatgttacaaaataaatctcacAGAATATTAAGCAGTATAACCCCACAGTCTAAAAGTCAACAGGATATCTATACAAAAGTATAAATGTTTTGCAGTAAAAGACAGATTTAGTTTATTTCAGGTTAATTCAGTTTGGTTCATTACTACGTAACTGGTAGACCTGAATAGCACAGGCTACTTGGTTCATGTTGACCTGATGAGCATTATTGCCATCTGAGGACTTTCAGTCTCAGGTTTACAGAGCACTTTTGGTGTGAAACAATAGGTTGCCTAGACTTATGTAATACACTTTTAACTACTCTGCTTATTTAGCACCTAAATTTAAGGGTGAAGGAAAAAGATTATGCCTGATATTtatctaaaataaaactgaatgaactgaatgaaaactgaaaatgacatttcaaaagagaatatagtagtatagtatatagtatataaatttgcaaaaaatacAGATGTACCTTATTATATCGTGAATCAAAAGTGTAATTTATTTCATGGAGCTTTTcatgtgaagagtttgtgtCTGACAGCTCTGTTGTTTACATATTTGAAGTGCAATCTCGTATCCATTGTGGCACGAAACTCATTCTACAGCACTACATTTACTTTACATATGCACTACAATGGCAGTGTGTTGTAACAGTCCTGTATTGCCTCGCCATTACAGTTCATACTGTACCTAATATCGAGCCAGTCTTTAAGACACATATTGTACCATATCATAAAGACACAATATGCCAATTTCACGAGAACCTTGAATGCACTGACAAGTATTTCTTAAAGTGATTTCATTccttgtctgtgtgtttatatagatCTGCTGTTTCTGTGAGACTGTTGTGAAGTTGGTTGGTGATCTTTATGGTAATTGTTATACAAAggccatattttttttatagacagCACCATATCAAGGAGCTGTTCATTTATGAAGTGTATTGAGATGTCAGATGGCGCATGCTATATATGTTGTCCAACTTGAATGTGTGGAAAGCCTCACCGAAACGTTCAACAGAATACATTTGTAGTTGTAGTGTTTCCAAGTTCCATTCAAATTTGGTGTGATTTGTTTCGAGAGACTTTGTAACAGTGATGGGCTGCTCGTCTAATATGTTAACTTGATATGCTACCACGCACAGGCTAAAGATTTACACATCAATACCTGAAATGGTTGATgggaaaaactgaaaaagatgCACTGCAATAACTTTTTAAATAGCTGTCATAATACAGTGTAATGTGATTCCTACTCCTGTCATGTTAGTTGTTCTCAAAGTGATGTGAGTAAGTTAAAAGTTATGTGGATTTGTAAAGGAATGGCTTAAATCTAGCTTGCTACCTTCAGGGGAACATGCTATAATATTATTCAACATTTTGTGCAGTTGGAACATGAGCCATGACTTCATTCTTCTCTATAATGGACTGTCTAACTGGTCCATTGGGTGGCACTATGAAATAATTAACCAAAGccctatatacatatacagaaaagatgatatgtaaaaatatatgtaaaatatttattccgAGCTATTCAGAATACTCAGTATATCACAGATAGATAATACAAATCTATACTCAATTCCTTACTTGCAAATAACATGTAAATGTTCTTATCTTCTGTTGTGTTCGAAGAATGATTTATTAATGGCAAAAAGTgttatactgtactgtataattgctgtttagcattttatataaaatgtgccAAAATAA

Function

symbol description
slc17a6a Predicted to enable L-glutamate transmembrane transporter activity and neurotransmitter transmembrane transporter activity. Predicted to be involved in several processes, including glutamatergic synaptic transmission; neurotransmitter loading into synaptic vesicle; and regulation of synapse structure or activity. Predicted to act upstream of or within neurotransmitter transport; sodium ion transport; and transmembrane transport. Predicted to be located in several cellular components, including cytoplasmic vesicle; neuron projection; and synapse. Predicted to be active in excitatory synapse. Predicted to be integral component of synaptic vesicle membrane. Is expressed in central nervous system and neurons. Orthologous to human SLC17A6 (solute carrier family 17 member 6).
slc17a6 Predicted to enable L-glutamate transmembrane transporter activity and neurotransmitter transmembrane transporter activity. Involved in neurotransmitter loading into synaptic vesicle. Predicted to be located in synaptic vesicle. Predicted to be active in excitatory synapse. Predicted to be integral component of synaptic vesicle membrane.

NR:

description
PREDICTED: vesicular glutamate transporter 2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG:

id description
K12302 SLC17A6_7_8; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6/7/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918671.2 True 4565 mRNA 0.43 12 15759626 15769464

Neighbor

gene id symbol gene type direction distance location
LOC113529473 gas2,LOC107728426 coding downstream 9902 15726943 ~ 15749724 (-)
ano3 ano3,LOC107677449,LOC107752468 coding downstream 50447 15652205 ~ 15709179 (-)
fibina LOC108275273 coding downstream 117106 15640341 ~ 15642520 (-)
spi1a LOC108275191,LOC108442687 coding downstream 132171 15620299 ~ 15627455 (-)
slc2a13b slc2a13 coding downstream 182412 15567829 ~ 15577214 (-)
LOC113529694 LOC108274566 coding upstream 232 15769696 ~ 15771485 (-)
ano5a ano5,LOC107728425 coding upstream 2950 15772414 ~ 15802627 (-)
pkp3a LOC108275089 coding upstream 78674 15848138 ~ 15864702 (-)
ccdc33 ccdc33 coding upstream 134856 15904320 ~ 15936578 (-)
sema7a sema7a coding upstream 228425 15997889 ~ 16005363 (-)
G149312 NA non-coding downstream 1125 15758284 ~ 15758501 (-)
G149305 fancf non-coding downstream 7156 15751159 ~ 15752470 (-)
G149301 NA non-coding downstream 33725 15725251 ~ 15725901 (-)
G149057 NA non-coding downstream 382220 15377203 ~ 15377406 (-)
G148992 NA non-coding downstream 428194 15331207 ~ 15331432 (-)
G149363 cyp11a non-coding upstream 128426 15897890 ~ 15898161 (-)
G149364 NA non-coding upstream 132976 15902440 ~ 15902642 (-)
G149366 NA non-coding upstream 134228 15903692 ~ 15903902 (-)
LOC113529609 NA non-coding upstream 298965 16068429 ~ 16092930 (-)
G149495 NA non-coding upstream 323608 16093072 ~ 16095175 (-)
LOC113529470 LOC108275326 other downstream 40051 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 530641 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 671566 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 946921 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1923871 13825782 ~ 13835755 (-)
islr2 islr2,LOC107662462 other upstream 211700 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 371655 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1283889 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2435187 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2533678 18303142 ~ 18305329 (-)

Expression


Co-expression Network