fancf (fancf)


Basic Information

Item Value
gene id fancf
gene name fancf
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15751139 ~ 15752526 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918674.2
TCGAGCCGGCGGGAGTCGTCTGTTCTGTTTCTGCTCTCGTAGCTCCTTTTACgcgttgtgtgtgtttgtgtttgtgttgtggaTCCGCACACGTGTCCTGTGTGAAGCTGGAGGCGGCAGAATGCGGGTTTAGCTGCTTCAGTGCGCCGCATGGAGGCTGTTCTGCACAACCTGGAGAGCACTGTGGAGCTGCTTGCGGTTTCACAGACCGActttgtgtgtgagtgggaCGGTGAGACAGTGGACAGGGCATTTCAGTGGGCACAGTACTGTGAACATCTTCACACTCGCTTCCACACAAACCCGTCAGTCCGTGCCGCTTTAGAGAGCCGCGTGCGCGAGACGAACCAGCTGCTGGCGCGCGCGTTCTCCGGTTATCGCTGTGTGAGTCTGGCTGATCTGGCGCAGTGCCGCCACAGGCTGCTTGTTGGTCTGTTGAAAAACCCCGCGACTCCACACCCTGTTATTAAATCCCTTTTGGAGAAGTTTGGGCTGGCTGGAGATGCTGAAGGTGCTGAAGGTGATCAGCATGTTGACCTCAGTGCTCTGAGCGCGTGCAGGTCAGCGTGTAAACTCCTGGGCGACTTTACACTGAACCGGAAGAGAGATTTTGGCCTCTCTGTTGGCACACAGGTTCATTGCATGATGCTCCTAGAGCGCATTCAGGCCATACAGAGCCGCCCGGGCAACCAGGAGTATGCTACAAAACTGCTGGATTGTTTCCTGGAGGACAGTGGAGAAGGACAGGACAGCTTTCTGGCATGTATAGCAGCTGCCCTCCTGTCAGCACACACCATGAGCGAAGACACTGCATCTCAAGCCTTTCTGCAGGACTGGTTAGAAGGACATGATGGCTTGCTGCACAGCATGTGTCAGTCTTTACCTCCTGAACTATGCACCAAACTTTCTCAACAATGGCATAAGTTTAGGCTTGCTTATTGGGACAGTTTAAAAAAGTCAGCCTCCTCCTTAGTGTATGATGTGAGCAATGGATTATGGATGCAGCCTTGTGACACTGCAGTGTCGTTTGCGACACTCACGGAAAGGTTTAAGTCCTTATGGAGCTCACCATTAAAAGATGAGACTGTAGAGCAGTTGGTCGCTCTTAAACAGGCTGATGGGGACTTCGAGGTCGAGGGACTGAGTGTGTGGACAGACCTGCTTGTACAGCTCAAGTGAAAGCTGTGTGTTCCTCTTTTGAGTTGctacaaatgaaaatgaagccAGTGGTGTGGTTTGATAGCAGACAGGGGGAGACAGTGCTCTTTAACAGATCTGCACATCCTCTCCCACTACAGAGCTGCAATGTTACCAAATTAGCTGTCAGAACTGCACATACTGTAATCTCAtttgtgtattaaaatgtaataaaagatCCGTTTTATTGA

Function

symbol description
fancf Predicted to be involved in cellular response to DNA damage stimulus. Predicted to act upstream of or within interstrand cross-link repair. Predicted to be part of Fanconi anaemia nuclear complex. Is expressed in brain; central nervous system; and lens. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group F; adenocarcinoma in situ; and granulosa cell tumor. Orthologous to human FANCF (FA complementation group F).

NR:

description
PREDICTED: Fanconi anemia group F protein

GO: NA

KEGG:

id description
K10893 FANCF; fanconi anemia group F protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918674.2 True 1388 mRNA 0.51 1 15751139 15752526

Neighbor

gene id symbol gene type direction distance location
si:ch211-87j1.4 LOC108274534,LOC103040017,LOC108442681,LOC105913127,LOC107701590,LOC107695923,LOC107555711,LOC107723960,LOC107752489,LOC107571669 coding upstream 116149 15631055 ~ 15634990 (+)
clpxb clpx,LOC108275190,LOC105913134,LOC108442679 coding upstream 130720 15609440 ~ 15620419 (+)
lrrk2 lrrk2 coding upstream 145402 15577183 ~ 15605737 (+)
mphosph6 mphosph6 coding upstream 302398 15446796 ~ 15448741 (+)
snx20 snx20 coding upstream 305084 15444108 ~ 15446055 (+)
sigirr sigirr coding downstream 79653 15832179 ~ 15841507 (+)
hexa hexa coding downstream 122337 15874863 ~ 15882172 (+)
nr2e3 nr2e3,LOC105892475,LOC107595245,LOC107589312 coding downstream 135581 15888107 ~ 15890739 (+)
stoml1 stoml1 coding downstream 139127 15891653 ~ 15895454 (+)
LOC113530122 cyp11a,LOC108442685,LOC106561846 coding downstream 145150 15897676 ~ 15905329 (+)
G149248 NA non-coding upstream 39222 15711013 ~ 15711917 (+)
G149131 NA non-coding upstream 181652 15567836 ~ 15569487 (+)
G149091 cpne8,LOC108274474 non-coding upstream 267236 15483074 ~ 15483903 (+)
G149089 NA non-coding upstream 269111 15481687 ~ 15482028 (+)
G149088 NA non-coding upstream 269569 15481252 ~ 15481570 (+)
G149268 NA non-coding downstream 2139 15754665 ~ 15754912 (+)
G149276 NA non-coding downstream 19312 15771838 ~ 15818368 (+)
G149427 NA non-coding downstream 272318 16024844 ~ 16026512 (+)
G149428 NA non-coding downstream 275081 16027607 ~ 16028019 (+)
G149552 NA non-coding downstream 502158 16254684 ~ 16255314 (+)
svip svip other upstream 26048 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 98455 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 1921808 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 1974268 13761334 ~ 13776871 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 2361943 13372872 ~ 13389196 (+)
LOC113529564 ano9,LOC108442698 other downstream 55464 15807990 ~ 15822591 (+)
G150589 LOC108274445 other downstream 2081711 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2430028 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2922484 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2969069 18721595 ~ 18724686 (+)

Expression


Co-expression Network