LOC113529473 (gas2,LOC107728426)


Basic Information

Item Value
gene id LOC113529473
gene name gas2,LOC107728426
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15726943 ~ 15749724 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918675.2
TGCAGCGCGCGGCGCGGGGAGTTGTGCGATGGCAGAGCGGGGCGCAGGGAGGACCAGACGCGGGGAGACGCGGCCACCGAGCAGAGCTGAGAAAGCATGAGCATTGCCACACGGATACAATCAATCAGCCCACAGCTTTCTCAGAGCATTGTTTTCCAAAGGATTTTCCCAAGACTGAGGAACAAACCTGAATGGACTGAGCCAGTGAAGAAGGGCAAGCATGTGCAGCTCTCTGAGTCCTAAGCAGCACCCATTTGGCCCAGGCCTCACTGACCTGCAGCAGTACAGTCTGTGGCTGGCCAGCAGACATGAAGCCAGCCTGCTGCCTATGAAGGAGGACCTGGCTCTCTGGCTCACCAGCATGCTGGGTGTTGAAATCACAGCGGAGAGTTTCATGGACAGGTTAGATAATGGCTTCCTGTTGTGTCAGCTGGCTGAGACACTGCAGGAGAAATTTAGGCAGAACAGTGGAGAACTGTCACCACTTGGCAAGCCAATCCCTAATCGGAGGATTCCATGTAGAGCAAGTGCCCCGTCTGGCTCTTTTTTTGCCCGAGACAACACAGCCAATTTCCTGTCATGGTGTCGAGAGGTGGGCGTTGGGGAGACCTGCTTGTTTGAGTCTGAGGGACTGGTCTTGCACAAACAGCCACGTGAGGTCTGCCTGTGTCTGCTGGAACTGGGGAGGATAGCGGCTAGGTATAAGGTCGAGCCACCTGGGTTAATTAAGCTGGAGAACGAGATTGAGCAGGAAGAGAAAGCCCCTGAGCCGCCTTCCTCTCCCGTCTCTCCCGCTCAGGGCTCGTCCTTTAACAAAAGCTCCTCCTGCAGGAAAAGCACTGGCAAGCTCCTGGATGACGCCGTAAGGCACATTTCTGAGGAACCTCCCTGTAAGTGCCCTAATAAGTTCTGTGTCGAGCGTCAGTCACAGGGCCGCTATCGTGTTGGAGAGAAGATACTCTTCATTCGGATGCTGCACAATAAACATGTGATGGTGCGAGTAGGTGGCGGCTGGGAGACTTTTGAGAGTTACCTGCTGAAGCATGACCCCTGCCGTATGCTGCAGATTTCCAGAGTGGAAGGCAAAGTGTCACCCATCTCCATCAAGTCCCCTAGCATCAAGGACCTAAGCCCTGACAGCTACCTGGTGGTGGCAGCCCACTACAGAAGTAAGAAGTAATAAAGGCCAGTGACAGATGAGGAAtatgagaaatgaaaaataggCTTTGAGGTGAAGTTCATATCACTTATATATGGCACTAACGTGTAAAGTAAAGCTGTTAGTTGGCATCTGTCTAGCATCCATCATGTGAGGCTCGAACCATTGGGATCCAGTCATTTATATCTGATGCAAAAACATGCTAAAATATACTCTGGACAAAGCAATGGCAATCTCAAACTTTATTtctgagctttatttttcttgcaAATTGTTATCAATATGTAGGCTGCTTGTATTAATAtagctaatttagctaaatTGACACACAGTGTCTGAACAGTACAGCAGGGCTGAAACACAGACTGTTGGTTTTAAGGGGAGaggaactggaaaaaaaacacaagatttttatttgtatattatttttgacatctcagaatgcaattTGATAAGTCAAAGATGATCACTTATAGCCTGGGATTGCAATTCATATATGTAGTGTAgattctgttgatttttttgttgttgttgttgtgttactGCTTTTACTTTCATTAGCCGAGATTTCTGCATAACTATTGCTTAAAGTTGACTGatgtacatacatttacattttttcctcGCAAAATGACCAACATTGTCATAACTTCTTAATGTATAAATTTGCAGTATTGTATCATATCTCAATATTAAGCAATGTTGTTTTCTCTAGAATTTGTCCACTTTATAGAAAATGATTTTCTTAAACACTTTTAGATGATGACTTTTCTTATTGTAAGAACagatataatgtaaatgtaatcacCTTTCTTCTATGCAAGACCAATCAAACATGTGAGCTGTTAATAGAATTTGATGTATGTCTGGAGTAAAATAAATCAGCAAgcgtttcagtgtttttatccATGAAA
>XM_026918676.2
TGCAGCGCGCGGCGCGGGGAGTTGTGCGATGGCAGAGCGGGGCGCAGGGAGGACCAGACGCGGGGAGACGCGGCCACCGAGCAGAGCTGAGAAAGCATGAGCATTGCCACACGGATACAATCAATCAGCCCACAGCTTTCTCAGAGCATTGTTTTCCAAAGGATTTTCCCAAGACTGAGGAACAAACCTGAATGGACTGACCTTCACTCTATTCACTCTTTTTAGGCCAGTGAAGAAGGGCAAGCATGTGCAGCTCTCTGAGTCCTAAGCAGCACCCATTTGGCCCAGGCCTCACTGACCTGCAGCAGTACAGTCTGTGGCTGGCCAGCAGACATGAAGCCAGCCTGCTGCCTATGAAGGAGGACCTGGCTCTCTGGCTCACCAGCATGCTGGGTGTTGAAATCACAGCGGAGAGTTTCATGGACAGGTTAGATAATGGCTTCCTGTTGTGTCAGCTGGCTGAGACACTGCAGGAGAAATTTAGGCAGAACAGTGGAGAACTGTCACCACTTGGCAAGCCAATCCCTAATCGGAGGATTCCATGTAGAGCAAGTGCCCCGTCTGGCTCTTTTTTTGCCCGAGACAACACAGCCAATTTCCTGTCATGGTGTCGAGAGGTGGGCGTTGGGGAGACCTGCTTGTTTGAGTCTGAGGGACTGGTCTTGCACAAACAGCCACGTGAGGTCTGCCTGTGTCTGCTGGAACTGGGGAGGATAGCGGCTAGGTATAAGGTCGAGCCACCTGGGTTAATTAAGCTGGAGAACGAGATTGAGCAGGAAGAGAAAGCCCCTGAGCCGCCTTCCTCTCCCGTCTCTCCCGCTCAGGGCTCGTCCTTTAACAAAAGCTCCTCCTGCAGGAAAAGCACTGGCAAGCTCCTGGATGACGCCGTAAGGCACATTTCTGAGGAACCTCCCTGTAAGTGCCCTAATAAGTTCTGTGTCGAGCGTCAGTCACAGGGCCGCTATCGTGTTGGAGAGAAGATACTCTTCATTCGGATGCTGCACAATAAACATGTGATGGTGCGAGTAGGTGGCGGCTGGGAGACTTTTGAGAGTTACCTGCTGAAGCATGACCCCTGCCGTATGCTGCAGATTTCCAGAGTGGAAGGCAAAGTGTCACCCATCTCCATCAAGTCCCCTAGCATCAAGGACCTAAGCCCTGACAGCTACCTGGTGGTGGCAGCCCACTACAGAAGTAAGAAGTAATAAAGGCCAGTGACAGATGAGGAAtatgagaaatgaaaaataggCTTTGAGGTGAAGTTCATATCACTTATATATGGCACTAACGTGTAAAGTAAAGCTGTTAGTTGGCATCTGTCTAGCATCCATCATGTGAGGCTCGAACCATTGGGATCCAGTCATTTATATCTGATGCAAAAACATGCTAAAATATACTCTGGACAAAGCAATGGCAATCTCAAACTTTATTtctgagctttatttttcttgcaAATTGTTATCAATATGTAGGCTGCTTGTATTAATAtagctaatttagctaaatTGACACACAGTGTCTGAACAGTACAGCAGGGCTGAAACACAGACTGTTGGTTTTAAGGGGAGaggaactggaaaaaaaacacaagatttttatttgtatattatttttgacatctcagaatgcaattTGATAAGTCAAAGATGATCACTTATAGCCTGGGATTGCAATTCATATATGTAGTGTAgattctgttgatttttttgttgttgttgttgtgttactGCTTTTACTTTCATTAGCCGAGATTTCTGCATAACTATTGCTTAAAGTTGACTGatgtacatacatttacattttttcctcGCAAAATGACCAACATTGTCATAACTTCTTAATGTATAAATTTGCAGTATTGTATCATATCTCAATATTAAGCAATGTTGTTTTCTCTAGAATTTGTCCACTTTATAGAAAATGATTTTCTTAAACACTTTTAGATGATGACTTTTCTTATTGTAAGAACagatataatgtaaatgtaatcacCTTTCTTCTATGCAAGACCAATCAAACATGTGAGCTGTTAATAGAATTTGATGTATGTCTGGAGTAAAATAAATCAGCAAgcgtttcagtgtttttatccATGAAA
>XM_026918677.2
TGCAGCGCGCGGCGCGGGGAGTTGTGCGATGGCAGAGCGGGGCGCAGGGAGGACCAGACGCGGGGAGACGCGGCCACCGAGCAGAGCTGAGAAAGCATGAGCATTGCCACACGGATACAATCAATCAGCCCACAGCTTTCTCAGAGCATTGTTTTCCAAAGGCCAGTGAAGAAGGGCAAGCATGTGCAGCTCTCTGAGTCCTAAGCAGCACCCATTTGGCCCAGGCCTCACTGACCTGCAGCAGTACAGTCTGTGGCTGGCCAGCAGACATGAAGCCAGCCTGCTGCCTATGAAGGAGGACCTGGCTCTCTGGCTCACCAGCATGCTGGGTGTTGAAATCACAGCGGAGAGTTTCATGGACAGGTTAGATAATGGCTTCCTGTTGTGTCAGCTGGCTGAGACACTGCAGGAGAAATTTAGGCAGAACAGTGGAGAACTGTCACCACTTGGCAAGCCAATCCCTAATCGGAGGATTCCATGTAGAGCAAGTGCCCCGTCTGGCTCTTTTTTTGCCCGAGACAACACAGCCAATTTCCTGTCATGGTGTCGAGAGGTGGGCGTTGGGGAGACCTGCTTGTTTGAGTCTGAGGGACTGGTCTTGCACAAACAGCCACGTGAGGTCTGCCTGTGTCTGCTGGAACTGGGGAGGATAGCGGCTAGGTATAAGGTCGAGCCACCTGGGTTAATTAAGCTGGAGAACGAGATTGAGCAGGAAGAGAAAGCCCCTGAGCCGCCTTCCTCTCCCGTCTCTCCCGCTCAGGGCTCGTCCTTTAACAAAAGCTCCTCCTGCAGGAAAAGCACTGGCAAGCTCCTGGATGACGCCGTAAGGCACATTTCTGAGGAACCTCCCTGTAAGTGCCCTAATAAGTTCTGTGTCGAGCGTCAGTCACAGGGCCGCTATCGTGTTGGAGAGAAGATACTCTTCATTCGGATGCTGCACAATAAACATGTGATGGTGCGAGTAGGTGGCGGCTGGGAGACTTTTGAGAGTTACCTGCTGAAGCATGACCCCTGCCGTATGCTGCAGATTTCCAGAGTGGAAGGCAAAGTGTCACCCATCTCCATCAAGTCCCCTAGCATCAAGGACCTAAGCCCTGACAGCTACCTGGTGGTGGCAGCCCACTACAGAAGTAAGAAGTAATAAAGGCCAGTGACAGATGAGGAAtatgagaaatgaaaaataggCTTTGAGGTGAAGTTCATATCACTTATATATGGCACTAACGTGTAAAGTAAAGCTGTTAGTTGGCATCTGTCTAGCATCCATCATGTGAGGCTCGAACCATTGGGATCCAGTCATTTATATCTGATGCAAAAACATGCTAAAATATACTCTGGACAAAGCAATGGCAATCTCAAACTTTATTtctgagctttatttttcttgcaAATTGTTATCAATATGTAGGCTGCTTGTATTAATAtagctaatttagctaaatTGACACACAGTGTCTGAACAGTACAGCAGGGCTGAAACACAGACTGTTGGTTTTAAGGGGAGaggaactggaaaaaaaacacaagatttttatttgtatattatttttgacatctcagaatgcaattTGATAAGTCAAAGATGATCACTTATAGCCTGGGATTGCAATTCATATATGTAGTGTAgattctgttgatttttttgttgttgttgttgtgttactGCTTTTACTTTCATTAGCCGAGATTTCTGCATAACTATTGCTTAAAGTTGACTGatgtacatacatttacattttttcctcGCAAAATGACCAACATTGTCATAACTTCTTAATGTATAAATTTGCAGTATTGTATCATATCTCAATATTAAGCAATGTTGTTTTCTCTAGAATTTGTCCACTTTATAGAAAATGATTTTCTTAAACACTTTTAGATGATGACTTTTCTTATTGTAAGAACagatataatgtaaatgtaatcacCTTTCTTCTATGCAAGACCAATCAAACATGTGAGCTGTTAATAGAATTTGATGTATGTCTGGAGTAAAATAAATCAGCAAgcgtttcagtgtttttatccATGAAA
>XM_026918679.2
TGCAGCGCGCGGCGCGGGGAGTTGTGCGATGGCAGAGCGGGGCGCAGGGAGGACCAGACGCGGGGAGACGCGGCCACCGAGCAGAGCTGAGAAAGCATGAGCATTGCCACACGGATACAATCAATCAGCCCACAGCTTTCTCAGAGCATTGTTTTCCAAAGCCTTCACTCTATTCACTCTTTTTAGGCCAGTGAAGAAGGGCAAGCATGTGCAGCTCTCTGAGTCCTAAGCAGCACCCATTTGGCCCAGGCCTCACTGACCTGCAGCAGTACAGTCTGTGGCTGGCCAGCAGACATGAAGCCAGCCTGCTGCCTATGAAGGAGGACCTGGCTCTCTGGCTCACCAGCATGCTGGGTGTTGAAATCACAGCGGAGAGTTTCATGGACAGGTTAGATAATGGCTTCCTGTTGTGTCAGCTGGCTGAGACACTGCAGGAGAAATTTAGGCAGAACAGTGGAGAACTGTCACCACTTGGCAAGCCAATCCCTAATCGGAGGATTCCATGTAGAGCAAGTGCCCCGTCTGGCTCTTTTTTTGCCCGAGACAACACAGCCAATTTCCTGTCATGGTGTCGAGAGGTGGGCGTTGGGGAGACCTGCTTGTTTGAGTCTGAGGGACTGGTCTTGCACAAACAGCCACGTGAGGTCTGCCTGTGTCTGCTGGAACTGGGGAGGATAGCGGCTAGGTATAAGGTCGAGCCACCTGGGTTAATTAAGCTGGAGAACGAGATTGAGCAGGAAGAGAAAGCCCCTGAGCCGCCTTCCTCTCCCGTCTCTCCCGCTCAGGGCTCGTCCTTTAACAAAAGCTCCTCCTGCAGGAAAAGCACTGGCAAGCTCCTGGATGACGCCGTAAGGCACATTTCTGAGGAACCTCCCTGTAAGTGCCCTAATAAGTTCTGTGTCGAGCGTCAGTCACAGGGCCGCTATCGTGTTGGAGAGAAGATACTCTTCATTCGGATGCTGCACAATAAACATGTGATGGTGCGAGTAGGTGGCGGCTGGGAGACTTTTGAGAGTTACCTGCTGAAGCATGACCCCTGCCGTATGCTGCAGATTTCCAGAGTGGAAGGCAAAGTGTCACCCATCTCCATCAAGTCCCCTAGCATCAAGGACCTAAGCCCTGACAGCTACCTGGTGGTGGCAGCCCACTACAGAAGTAAGAAGTAATAAAGGCCAGTGACAGATGAGGAAtatgagaaatgaaaaataggCTTTGAGGTGAAGTTCATATCACTTATATATGGCACTAACGTGTAAAGTAAAGCTGTTAGTTGGCATCTGTCTAGCATCCATCATGTGAGGCTCGAACCATTGGGATCCAGTCATTTATATCTGATGCAAAAACATGCTAAAATATACTCTGGACAAAGCAATGGCAATCTCAAACTTTATTtctgagctttatttttcttgcaAATTGTTATCAATATGTAGGCTGCTTGTATTAATAtagctaatttagctaaatTGACACACAGTGTCTGAACAGTACAGCAGGGCTGAAACACAGACTGTTGGTTTTAAGGGGAGaggaactggaaaaaaaacacaagatttttatttgtatattatttttgacatctcagaatgcaattTGATAAGTCAAAGATGATCACTTATAGCCTGGGATTGCAATTCATATATGTAGTGTAgattctgttgatttttttgttgttgttgttgtgttactGCTTTTACTTTCATTAGCCGAGATTTCTGCATAACTATTGCTTAAAGTTGACTGatgtacatacatttacattttttcctcGCAAAATGACCAACATTGTCATAACTTCTTAATGTATAAATTTGCAGTATTGTATCATATCTCAATATTAAGCAATGTTGTTTTCTCTAGAATTTGTCCACTTTATAGAAAATGATTTTCTTAAACACTTTTAGATGATGACTTTTCTTATTGTAAGAACagatataatgtaaatgtaatcacCTTTCTTCTATGCAAGACCAATCAAACATGTGAGCTGTTAATAGAATTTGATGTATGTCTGGAGTAAAATAAATCAGCAAgcgtttcagtgtttttatccATGAAA

Function

symbol description
gas2 Predicted to enable actin filament binding activity and cytoskeletal anchor activity. Predicted to be involved in actin crosslink formation. Predicted to act upstream of or within several processes, including ovarian follicle development; ovulation; and regulation of Notch signaling pathway. Predicted to be located in cytosol. Predicted to be active in actin filament.

NR:

description
PREDICTED: growth arrest-specific protein 2

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process

KEGG:

id description
K24627 GAS2, GAS2L; growth arrest-specific protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918675.2 False 2073 mRNA 0.45 9 15726943 15749724
XM_026918676.2 True 2098 mRNA 0.45 9 15726943 15749724
XM_026918677.2 False 2034 mRNA 0.45 8 15726943 15749724
XM_026918679.2 False 2059 mRNA 0.45 8 15726943 15749724

Neighbor

gene id symbol gene type direction distance location
ano3 ano3,LOC107677449,LOC107752468 coding downstream 17764 15652205 ~ 15709179 (-)
fibina LOC108275273 coding downstream 84423 15640341 ~ 15642520 (-)
spi1a LOC108275191,LOC108442687 coding downstream 99488 15620299 ~ 15627455 (-)
slc2a13b slc2a13 coding downstream 149729 15567829 ~ 15577214 (-)
kif21a kif21a,LOC102199929 coding downstream 160535 15522687 ~ 15566408 (-)
slc17a6a slc17a6,slc17a6a,LOC107555703,LOC107677426,LOC107570095 coding upstream 9902 15759626 ~ 15769464 (-)
LOC113529694 LOC108274566 coding upstream 19972 15769696 ~ 15771485 (-)
ano5a ano5,LOC107728425 coding upstream 22690 15772414 ~ 15802627 (-)
pkp3a LOC108275089 coding upstream 98414 15848138 ~ 15864702 (-)
ccdc33 ccdc33 coding upstream 154596 15904320 ~ 15936578 (-)
G149301 NA non-coding downstream 1042 15725251 ~ 15725901 (-)
G149057 NA non-coding downstream 349537 15377203 ~ 15377406 (-)
G148992 NA non-coding downstream 395511 15331207 ~ 15331432 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 588936 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 594446 15130776 ~ 15132497 (-)
G149305 fancf non-coding upstream 1435 15751159 ~ 15752470 (-)
G149312 NA non-coding upstream 8560 15758284 ~ 15758501 (-)
G149363 cyp11a non-coding upstream 148166 15897890 ~ 15898161 (-)
G149364 NA non-coding upstream 152716 15902440 ~ 15902642 (-)
G149366 NA non-coding upstream 153968 15903692 ~ 15903902 (-)
LOC113529470 LOC108275326 other downstream 7368 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 497958 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 638883 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 914238 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1891188 13825782 ~ 13835755 (-)
islr2 islr2,LOC107662462 other upstream 231440 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 391395 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1303629 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2454927 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2553418 18303142 ~ 18305329 (-)

Expression


Co-expression Network