nptna (LOC108274497,LOC108436943)


Basic Information

Item Value
gene id nptna
gene name LOC108274497,LOC108436943
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18404512 ~ 18420371 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918682.2
GTGTGCTGCTTCGCTCTCGTGTTACACAGCGGGTGGATGGAGCAGGTGCTCTCTGCTTACCGCGCGCTATTGCTAGGCGACCAGCGTGCTCAGTGACCCGGTTCAGGCTCCGCCGAGGCTCGCGCTCTCACTCTAACGAGCCTGTCTTTATCAGCAGCTCCGCGCTAAACCCGACGCAGAGTTCCACTCACATAGCTAGTGTTAGGTAGACTACCTGCCAGGCGAGACAGAAGATGTCTGGTCCGGGGAATCGAGTGATGCTGGTGCTCGGAGTGGCGGTGCTGCATGCGGTGTCTGCTCTGATCGAGCCATCGATCAATGCGTCCGACCACCTCACCCTACCAATAGATTACCACGGACCATCAGTCACACTGCAGTGTAACCTGACTACCTCTCAGTTCACCCAACGTGAGAGCTACTGGATGAAGAATGGAGAGGAGATCCAAGGCACACGGACAGAGCAGAGGGCCATTGAGTACACaatCACTAAACCAAGGGCAGATGATGCAGgggagtatatgtgtgtgtacacatttgACCTGGGCCCTCCTGCCAATGCCACCATTGAAGTGAAAGctgctccagACATCACAGGACACAAGCGCAGTGAGAATAAGAATGAGGGAGAACGCGCTGTCCTCTATTGCAAGTCCGCTGGCTACCCTAATCCTACCTGGTCCTGGCGCAAGTTAGACAGTGGCTCTTTTGACATTGACAACTCCTCTGGCCGCTTTTTCATCAGCAACAAGGACAGCTACACAGAGCTGTTAATCATTAACCTGGACATCAATTCTGATCCTGGAGAATATGAGTGCAACGCCACTAATATTGTTGGCACCTCTCGTATGACCTCAGTGCTTCGCGTGCGGAGTCACCTGGCTCCCCTCTGGCCCTTCCTGGGCATCCTTGCTGAAATCATCCTTTTGATCCTCATCATTGTCATCTACGAGAAAAGCAAGAAGCCTGATGAAGTTCCAGATGATGATGAATCAGCTGGCCCAATGAAAACTAATTCAACTAACAATCACAAAGATAAAAACCTACGTCAAAGGAATACAAATTAAACCAACCACTAGTACAatgAAGACATTCATATCATGACCATACGAACGTAACACAAAGGAGTTCATTGTTTAAGAAAGCATATATTGGTGTTAAGAAAGTATTGGTGAGATGAAATATATACGTCCACTCAAGGCATGCCTTATGAATGTGTTGGCAAGAGGATGTCTTATAAGAAACATTACTAATAAtagtgtaaatattatgaacattttattgCATGATTGTGTTGCTTTCAATATTTGTCTTTCATTCACAatgccttttctttttcatgtcaAAACTAGAGATATGTAGTGCATGCAATATATTAACCTGCTGTTTGAGAAAGACATGAgaatttgtgtatttcagagtgacatcatgtagataatatttatattttaggcaAATCTTCAACTTTGCATTGTAAGCCAATCTACCACCATGTTTCTGGTATGACAGTTTTTGTACAGTTTATCATTTCACTGCATATCTTTGCGTAAGGTGGCTTATCATTTTATCGGTTAACTTTATTTAAGTCATAGGTTTCAATAATGGATAAGGGCTTTACAATGTCCTGTAATGTTCCAGTTTTACATATATGGTACATgactttatttatgtatgtatcaTGACTCTGGAGATATCCATAGTTATTTGAATGTTATCCATTCTGATGCACTAAGTGTTCAGATGAATTCTGAATTGGTAATGTCATTTTCTAATGCTAAACCTTATCTATCTATGACTCAGCTTTTTACATATGCATACTATACAGCATGGCTTTTATCCTATGCAATATTtgttcataaatataaatatatatatagtagaataAGCATTTTTTACTATTGGCTTTTGGTTGTTTGTTAAAGCTTTAATATGATAGGTTTGCCATTGATAGCAACGTGCACTGTTCAGACTAAGAATGAGCCCTGGAAATATCCAGCTTCACACAGCACCATTCCTTCTGCATGAGCTTCCTGCCAGTGCAGACGCCCAACTCCACAGACAAAAGAAAGTCAGACAAAGTGGATGGTCATAAGGCACTTCcatatcatttttaacaattaaACATTCTAATTTTA
>XM_026918683.2
GTGCTGCTTCGCTCTCGTGTTACACAGCGGGTGGATGGAGCAGGTGCTCTCTGCTTACCGCGCGCTATTGCTAGGCGACCAGCGTGCTCAGTGACCCGGTTCAGGCTCCGCCGAGGCTCGCGCTCTCACTCTAACGAGCCTGTCTTTATCAGCAGCTCCGCGCTAAACCCGACGCAGAGTTCCACTCACATAGCTAGTGTTAGGTAGACTACCTGCCAGGCGAGACAGAAGATGTCTGGTCCGGGGAATCGAGTGATGCTGGTGCTCGGAGTGGCGGTGCTGCATGCGGTGTCTGCTCTGATCGAGCCATCGATCAATGCGTCCGACCACCTCACCCTACCAATAGATTACCACGGACCATCAGTCACACTGCAGTGTAACCTGACTACCTCTCAGTTCACCCAACGTGAGAGCTACTGGATGAAGAATGGAGAGGAGATCCAAGGCACACGGACAGAGCAGAGGGCCATTGAGTACACaatCACTAAACCAAGGGCAGATGATGCAGgggagtatatgtgtgtgtacacatttgACCTGGGCCCTCCTGCCAATGCCACCATTGAAGTGAAAGctgctccagACATCACAGGACACAAGCGCAGTGAGAATAAGAATGAGGGAGAACGCGCTGTCCTCTATTGCAAGTCCGCTGGCTACCCTAATCCTACCTGGTCCTGGCGCAAGTTAGACAGTGGCTCTTTTGACATTGACAACTCCTCTGGCCGCTTTTTCATCAGCAACAAGGACAGCTACACAGAGCTGTTAATCATTAACCTGGACATCAATTCTGATCCTGGAGAATATGAGTGCAACGCCACTAATATTGTTGGCACCTCTCGTATGACCTCAGTGCTTCGCGTGCGGAGTCACCTGGCTCCCCTCTGGCCCTTCCTGGGCATCCTTGCTGAAATCATCCTTTTGATCCTCATCATTGTCATCTACGAGAAAAGCAAGAAGCCTGATGAAGTTCCAGATGCTGGCCCAATGAAAACTAATTCAACTAACAATCACAAAGATAAAAACCTACGTCAAAGGAATACAAATTAAACCAACCACTAGTACAatgAAGACATTCATATCATGACCATACGAACGTAACACAAAGGAGTTCATTGTTTAAGAAAGCATATATTGGTGTTAAGAAAGTATTGGTGAGATGAAATATATACGTCCACTCAAGGCATGCCTTATGAATGTGTTGGCAAGAGGATGTCTTATAAGAAACATTACTAATAAtagtgtaaatattatgaacattttattgCATGATTGTGTTGCTTTCAATATTTGTCTTTCATTCACAatgccttttctttttcatgtcaAAACTAGAGATATGTAGTGCATGCAATATATTAACCTGCTGTTTGAGAAAGACATGAgaatttgtgtatttcagagtgacatcatgtagataatatttatattttaggcaAATCTTCAACTTTGCATTGTAAGCCAATCTACCACCATGTTTCTGGTATGACAGTTTTTGTACAGTTTATCATTTCACTGCATATCTTTGCGTAAGGTGGCTTATCATTTTATCGGTTAACTTTATTTAAGTCATAGGTTTCAATAATGGATAAGGGCTTTACAATGTCCTGTAATGTTCCAGTTTTACATATATGGTACATgactttatttatgtatgtatcaTGACTCTGGAGATATCCATAGTTATTTGAATGTTATCCATTCTGATGCACTAAGTGTTCAGATGAATTCTGAATTGGTAATGTCATTTTCTAATGCTAAACCTTATCTATCTATGACTCAGCTTTTTACATATGCATACTATACAGCATGGCTTTTATCCTATGCAATATTtgttcataaatataaatatatatatagtagaataAGCATTTTTTACTATTGGCTTTTGGTTGTTTGTTAAAGCTTTAATATGATAGGTTTGCCATTGATAGCAACGTGCACTGTTCAGACTAAGAATGAGCCCTGGAAATATCCAGCTTCACACAGCACCATTCCTTCTGCATGAGCTTCCTGCCAGTGCAGACGCCCAACTCCACAGACAAAAGAAAGTCAGACAAAGTGGATGGTCATAAGGCACTTCcatatcatttttaacaattaaACATTCTAATTTTA

Function

NR:

description
PREDICTED: neuroplastin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918682.2 True 2132 mRNA 0.42 8 18404512 18420371
XM_026918683.2 False 2118 mRNA 0.42 8 18404512 18420369

Neighbor

gene id symbol gene type direction distance location
hcn4l hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391 coding downstream 6254 18378729 ~ 18398258 (-)
LOC113530128 LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663 coding downstream 56865 18340453 ~ 18347647 (-)
arid3b LOC108275332,LOC108436938,LOC107575848,LOC107752332 coding downstream 66089 18318624 ~ 18338423 (-)
washc4 kiaa1033,si:dkey-23p11.2,LOC107696292,LOC107678984 coding downstream 158808 18228113 ~ 18245704 (-)
lrrc10 lrrc10 coding downstream 185771 18216233 ~ 18218741 (-)
ube2q2 ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444 coding upstream 27771 18448142 ~ 18457983 (-)
tafa5b fam19a5b,LOC108428378,LOC108274593,LOC103024527,LOC107696241,LOC107716636,LOC107753604,LOC107598818 coding upstream 114574 18534945 ~ 18552473 (-)
zcrb1 zcrb1 coding upstream 238164 18658535 ~ 18659614 (-)
LOC113529455 LOC108274993 coding upstream 287690 18708061 ~ 18713197 (-)
LOC117597890 NA coding upstream 305928 18726299 ~ 18729600 (-)
G150925 LOC108275437,LOC108436941,LOC107661438,LOC107696282,LOC107573699 non-coding downstream 27671 18373113 ~ 18376841 (-)
G150891 NA non-coding downstream 65798 18338502 ~ 18338714 (-)
G150875 NA non-coding downstream 98069 18306209 ~ 18306443 (-)
G150854 NA non-coding downstream 101553 18301293 ~ 18302959 (-)
G150834 NA non-coding downstream 149094 18255075 ~ 18255418 (-)
G150988 NA non-coding upstream 1122 18421493 ~ 18422644 (-)
G150989 NA non-coding upstream 2286 18422657 ~ 18423325 (-)
G150996 NA non-coding upstream 24520 18444891 ~ 18445188 (-)
G151009 NA non-coding upstream 87405 18507776 ~ 18507976 (-)
G151026 NA non-coding upstream 166010 18586381 ~ 18587613 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other downstream 40476 18353974 ~ 18364036 (-)
etfbkmt etfbkmt other downstream 99183 18303142 ~ 18305329 (-)
LOC113530223 NA other downstream 99711 18304638 ~ 18304801 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 190025 18204651 ~ 18214487 (-)
LOC113529460 nrg4 other downstream 1345606 17053353 ~ 17058906 (-)
G150991 LOC108436944 other upstream 4948 18425319 ~ 18428973 (-)
gatd1 pddc1,LOC102788149 other upstream 871838 19292209 ~ 19295843 (-)
zgc:114188 rps17,rs17,LOC107389132,LOC103042467,LOC108428414 other upstream 959285 19379656 ~ 19392962 (-)
LOC113530226 NA other upstream 966870 19387241 ~ 19387366 (-)
LOC113530227 NA other upstream 967398 19387769 ~ 19387895 (-)

Expression


Co-expression Network