hbp1 (hbp1,LOC107701066,LOC107754327)


Basic Information

Item Value
gene id hbp1
gene name hbp1,LOC107701066,LOC107754327
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15194318 ~ 15199670 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918707.2
CTAAAAGTAATCGGTCCAGCCTTCTCGGAGAATGCTAGAGATACTCGGTAATGGCGACAGGTCGGCCTGCCCATGTGACAAGGTGTAATATGGTGTGGGAGGTAAAGACAGTCTCTAAAAGAATCCAGGAATCCAAGACAGATTGCTCCAGCATGGACGAGGCCTTTGACCTGCTCAAGTGTAATGAGGACCTGACATCTTCACCAGGCTGCCCCTCTACTGAAGGCCCTATAGAATACGATGACTTGCCAGAACTACAGGAAGTGAAGGATGACCAGTCGTCCCCAGCAGTGTTCCAGGTGACCCCGGGTGTGTCGCATGAAGAGAGGCCTGAGCCGGGCTGGAGCCTGCAGACAGAAAGCAGTAGCATCTCCCACACAAACTGGCTCACGGAGTTAGCCAACATCGCCACCAGTCCCCAAAGTCCTTTACTGCAGAGTGCACCCCACCCCAGGTCTTCGCCTGTGCATATCTTTGCCCACAGTAACAGTTTACATTCCTACGCCCGGCCTCCGTTGGCCTCCAGCAGTGCTCCCAGTCCTGCTCGTAGCCACATGAGAGAGCGTCGCCGCACGAGGGCTAGCAGTGAGTCAGAGTCTGGGATATTCTGTATGTCTTCACtgtctgatgatgatgacatgGGATGGTCCCATTCTTGGCCCTCCACAGTCTGGCACTGCTTTCTGAAAGgCACACGCCTGCGTTTTCACAAAGGGCCAAATGTGGAGTGGCAGGAGGTGGAAGATGTGGCTGAGTCTGAAGATGAGTCTGATGATGAAGGAGGCATGCACCTCAGTCCCATTAAAACATATGGATGTGAGGGGTTGAAACTTGTGGCCCTGGAGGAGACTGTGTCATTTGGCCAGTCGGTTCTGAAATTAACCTTTGACCCTGGTTCTCAAGAGGCTGGGCTTCTAACTGCTGAGTGCCAACTGGACCATCCattttatgtgaaaaataaagGTTGGTCCTCTTTTTATCCGAGCCTTACTGTGGTGCAGCATGGTATTCCCTGTTATGAAATGCAGATTGGGGACTTGTGTCTACCTCCAGGACACCGTGATGCCATCAACTGTGATGACTCAACTGTTTTTGACACCTTCAGGAGTTATGACTTCACCCCTCTGGACTCATCTGCTGTGTATGTGCTGAGCAGTATGGCACGCCAGAGAAGAGCATCCCAGTCAAGCGGGGGCACTGTGAGCCCTGATTGTGACAAGCTGGAGCGTTCTGGCTCTTCCCATCACTCCCCTAGTAGCAAATCACATCGTAGCCACTCCTCAGGGGGAACTGCAGCCACACCTACAAAATGCAAACGGCCAATGAACGCTTTCATGCTCTTTGCTAAGAAGTATCGAGTGGAGTACACACAGATGTATCCTGGGAAAGATAACAGAGCTATTAGTGTGATTCTGGGTGATAAgtggaagaaaatgaagaacgAGGAGAGAAGGATGTACACCATGGAGGCTAAAGCGCTGGCTGAGGAGCAAAAACGCCTCAACCCAGATTGTTGGAAACGCAAGAGAACCAACTCGGGTTCTCAGCAGAACTAGCCATGAAACAGGAATGGGAGCGAATGACATCACCTATGCCATCTATCCACCCGTACGAGTGAGGAGACTTAACTGTGATGATGacagcaatatatatatatatatatatatatatatatat

Function

symbol description
hbp1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human HBP1 (HMG-box transcription factor 1).

NR:

description
PREDICTED: HMG box-containing protein 1

GO: NA

KEGG:

id description
K21644 HBP1; HMG box transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918707.2 True 1677 mRNA 0.50 11 15194318 15199670

Neighbor

gene id symbol gene type direction distance location
gpr22b gpr22,LOC108428781,LOC107754326,LOC107561157,LOC107701065,LOC107676451 coding downstream 23611 15164565 ~ 15170707 (-)
golt1bb golt1bb,LOC108275057,LOC108428784,LOC107676462,LOC105895666 coding downstream 45036 15145412 ~ 15149282 (-)
pthlhb LOC108274596 coding downstream 76540 15116022 ~ 15117778 (-)
LOC113529696 LOC108274568,LOC108428736,LOC104940688,LOC106573136,LOC103380577,LOC102196233 coding downstream 79453 15113679 ~ 15114865 (-)
cib1 cib1,LOC100536377 coding downstream 95404 15094752 ~ 15098914 (-)
LOC113530066 prkar2b,LOC108275286,LOC107676465,LOC107732287 coding upstream 345 15200015 ~ 15217057 (-)
irx5b LOC108275041 coding upstream 82188 15281858 ~ 15285227 (-)
rpgrip1l rpgrip1l coding upstream 185418 15385088 ~ 15405178 (-)
hsd17b2 LOC108275401 coding upstream 249072 15448742 ~ 15452712 (-)
gpia gpia,LOC108274969,LOC108428767,LOC107679975 coding upstream 254510 15454180 ~ 15465781 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 56311 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 61821 15130776 ~ 15132497 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding downstream 65812 15127232 ~ 15128506 (-)
G148833 NA non-coding downstream 156856 15037225 ~ 15037462 (-)
G148612 pdhx non-coding downstream 511565 14681515 ~ 14682753 (-)
G148992 NA non-coding upstream 131537 15331207 ~ 15331432 (-)
G149057 NA non-coding upstream 177533 15377203 ~ 15377406 (-)
G149301 NA non-coding upstream 525581 15725251 ~ 15725901 (-)
G149305 fancf non-coding upstream 551489 15751159 ~ 15752470 (-)
G149312 NA non-coding upstream 558614 15758284 ~ 15758501 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 106258 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 381613 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1358563 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1403773 13790287 ~ 13790545 (-)
syt8 LOC108275171,LOC103035847,LOC108428822,LOC107742052,LOC107595270,LOC107675261,LOC107549275,LOC107758745 other downstream 1729102 13457100 ~ 13465216 (-)
LOC113529695 NA other upstream 20300 15219970 ~ 15228985 (-)
LOC113529470 LOC108275326 other upstream 512323 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 781494 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 941449 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1853683 17053353 ~ 17058906 (-)

Expression


Co-expression Network