gnb5a (gnb5,LOC108432683,LOC106584742,LOC105018176)


Basic Information

Item Value
gene id gnb5a
gene name gnb5,LOC108432683,LOC106584742,LOC105018176
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 22129488 ~ 22137092 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918712.2
GGCATCCTTCCCGTGACGTCACATCAGCTGCATCCGCCGCTCGCGCTCTAACATCCAGCCTGTCATAAGGCTCCTTTGGTCCTGTTCGGAAAataattctaaataataataataatactaataataataacgcgCTTTAGCTCCGGGGAATATCTCATTCAGGGGGTAGAAAGAAAAGATGGCTGCCCAGGAAGTGCAGCCGAGCGAGACCATAGCGAAGCTGAAATCAGAGTCAGAGACGCTGAAGACGAAGCTGGAAGAGGAGCGGGCCAAACTGCATGATGTGGAGCTGCACCAGGTGGCAGAGAAGGTGGAGTCTCTCGGCCAGTTCGTCATGAAGACCAGGAGAACTCTGAAAGGACACGGCAACAAAGTGCTTTGCATGGACTGGTGTAAAGACAAGAGGAGAATTGTGAGCTCGTCCCAGGATGGAAAGGTGATTGTGTGGGATGCGTTTACAACCAACAAGGAGCATGCAGTGACCATGCCATGTACATGGGTGATGGCCTGTGCGTACGCTCCGTCTGGATGTGCAGTAGCATGTGGTGGTCTTGACAACAAGTGTTCTGTGTACCCACTATCCCTGGATAAGAACGAGAACCTGGCAGCGAAGAAGAAGTCCGTGGCAATGCACACCAATTACTTGTCTGCCTGCAGCTTCACCAACTCAGATATGCAGATCCTGACATCGAGTGGTGATGGAACGTGTGCATTGTGGGATGTGGAAAGTGGGCAGCTGCTCCAGAGTTTCCATGGTCATGCAGCTGATGTGCTTTGCCTGGACCTTGCTCCCTCTGAGACTGGCAACACCTTTGTCTCTGGGGGCTGTGATAAGAAGGCTAATGTATGGGACATGCGCTCAGGACAGTGCATCCAGTCATTTGAGACCCATGAGTCAGATATTAACAGTGTGCGGTACTATCCAAGTGGGGATGCATTTGCCTCTGGCTCAGATGATGCTACTTGCCGTCTGTACGACCTGAGGGCCGATAGAGAAGTGGCAATTTATTCCAAGGAGAGCATCATATTTGGAGCTTCCAGTGTGGACTTCTCACTCAGTGGCAGACTACTATTTGGTGGCTACAACGACTACACCATCAACGTGTGGGACGTTCTAAAGGGGACCCGTGTATCCATTTTGTTCGGACATGAGAACAGAGTCAGTACCCTTCGCGTCTCTCCAGACGGGACAGCGTTCTGCTCAGGGTCCTGGGACCACACTTTACGGGTCTGGGCTTGAACAGCGGTACGCCTGCATTGCCTGCTAGGTTCTCTCTGGCATTCACATCAACAGCAACATTCACTAGAACAACTATTGACTTAAAGTGTTGGATTTGTAAGAAATGCACAGTAGAGTAGAACAGGGTTGAAGAGAGACTGTCGTCTATACAGACAAGAGCACAatgttatttagtttttttgatAAATATAGGACCAAAACTTGGCCAGAAACActagctgtgtctcaaatcataTACTATGGGCTGTTTATCAGAGTAAATATTTCTCACTAATACATGAAGTGCATGCAATTTATAAACAACACTATAAATAATGGAGTATAATTTCACACTACTTCTCTGTGTTCATACGTCACCTGGTATCTTCAACTATGAGTGAATAAACGAGCCAGTGCTTGAATGGAATAAGTTAATATACAAATGTCAGCAGTTGTGAGGAAGgtttcttatatttataatttaatgagGCAGTTgcctctttgtttttctttttttaatgaacatgaacatactAATGATTCAATCATATGTAAAATGGCAAGGTAATACATGAAAGTATTAGATTTCAGCTGTCTATAtctatatacttatatacatcTATACTCTTCTGCTATAGGATACTTCATATCCATCAACTCTATACTAATAACCAGCCCTCTTCTTACAAACTCCTGTATTTGGCCATTTTATTACGGTTATGtctaggcaaaaaaaaaaaaaaa

Function

symbol description
gnb5 Enables G-protein gamma-subunit binding activity and chaperone binding activity. Contributes to GTPase activator activity. Involved in dopamine receptor signaling pathway; negative regulation of voltage-gated calcium channel activity; and positive regulation of GTPase activity. Located in cytosol.

NR:

description
PREDICTED: guanine nucleotide-binding protein subunit beta-5-like

GO: NA

KEGG:

id description
K04539 GNB5; guanine nucleotide-binding protein subunit beta-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918712.2 True 1963 mRNA 0.45 11 22129488 22137092

Neighbor

gene id symbol gene type direction distance location
myo5c myo5c,LOC106561779 coding upstream 697 22108347 ~ 22128791 (+)
myo5ab LOC108275443,LOC108432640 coding upstream 22295 22081919 ~ 22107193 (+)
bet1l bet1l,LOC107740886,LOC107559993,LOC107569707 coding upstream 55478 22070646 ~ 22074010 (+)
prdm11 prdm11 coding upstream 82159 22035251 ~ 22047329 (+)
phf21ab LOC108275277,LOC108432679,LOC107673221,LOC105892361 coding upstream 95097 22004622 ~ 22034391 (+)
ap4e1 ap4e1 coding downstream 2541 22139633 ~ 22156798 (+)
drd4a drd4,drd4a,LOC107561186,LOC107655149,LOC107726856 coding downstream 46910 22184002 ~ 22190803 (+)
pidd1 pidd1 coding downstream 146580 22283672 ~ 22296360 (+)
slc25a22a si:dkey-201c1.2,slc25a22,LOC107561181,LOC107732297,LOC107551436,LOC106096417 coding downstream 159935 22297027 ~ 22326565 (+)
ppp1r32 ppp1r32 coding downstream 317108 22454200 ~ 22464122 (+)
G152838 NA non-coding upstream 317889 21810911 ~ 21811599 (+)
G152736 NA non-coding upstream 504824 21624450 ~ 21624664 (+)
G152403 NA non-coding upstream 1004193 21122929 ~ 21125295 (+)
G152404 NA non-coding upstream 1006652 21122322 ~ 21122836 (+)
G152391 NA non-coding upstream 1066429 21059032 ~ 21063059 (+)
G152984 LOC100304581 non-coding downstream 20775 22157867 ~ 22158096 (+)
G152985 NA non-coding downstream 21340 22158432 ~ 22158654 (+)
G152987 NA non-coding downstream 23566 22160658 ~ 22160872 (+)
G153013 NA non-coding downstream 78162 22215254 ~ 22215502 (+)
G153026 NA non-coding downstream 93213 22230305 ~ 22231430 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other upstream 50992 22076849 ~ 22078496 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other upstream 71330 22052614 ~ 22058158 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other upstream 2381408 19661843 ~ 19748080 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other upstream 2744584 19323331 ~ 19384904 (+)
G151401 NA other upstream 2865595 19260624 ~ 19263893 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other downstream 79183 22216275 ~ 22266382 (+)
syt7a syt7,LOC108432693,LOC107655153,LOC107754343,LOC107551433 other downstream 193671 22330763 ~ 22446147 (+)
LOC113529801 LOC108274632,LOC108274583 other downstream 462702 22599794 ~ 22623807 (+)
LOC113529608 NA other downstream 994474 23131566 ~ 23139656 (+)
oaz2a oaz2,LOC108275215,LOC108432726 other downstream 1290746 23427838 ~ 23436830 (+)

Expression


Co-expression Network