LOC113529491 (LOC108275229,LOC103023804,LOC103475354)


Basic Information

Item Value
gene id LOC113529491
gene name LOC108275229,LOC103023804,LOC103475354
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7422869 ~ 7434230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918713.2
GCGTGCTCGGAGGATGGCATCTCAGCTTCACCAGCTGCATTTTAATGTGAAGGGGGAGTTTCCATCAAGGGGCCCTGCTGAAAGTGTAGAGCTGTAAGCTGTTTAGGCTTCAGAGAAAACTaagtgtcagagagagaacagatgaATCTGAAGACCATCAGCTTCACTGATAGATCAGCATGGCTGCCGTGGACGTAGACACATACCCTACTGAGGAAAAGAGGACTCTGACTCTCGGCGGCCATGTTGGTTTTGACAGCCTCCCAGATCAGCTTGTTAGCAAATCAGTGTCTCAAGGCTTCTGCTTCAACATCCTCTGCGTGGGTGAAACTGGGATTGGAAAATCAACATTAATGAACACTCTGTTCAACACAATCTTTGAAAACGAGGAGGCCAGTCACTATCAGAGTGGTGTGTATTTACGAGCCAGGACGTATGAGCTGCAGGAGAGCAACGTGGACCTCAAGCTGACGATCGTCAACACCGTGGGGTTCGGTGATCAGGTCAATAAAGAAGAGAGCTATAAACCCATTACGGACTACATTGATGCCCAGTTTGAGAATTTCCTCCAAGAGGAGCTGAAGATTAAACGTTCACTCTTTAACTACCACGACACGAGGATCCACGCCTGTCTATACTTCATCTCTCCTACAGGCCACTCGCTCAGATCCCTCGATCTGGTCACCATGAAAATGTTGGACAGTAAGGTAAACATCATTCCCATTATCGCTAAAGCAGACACAATCTCCAAATCTGAGCTTCATAAATTCAAGATTAAGATCATGAGTGAGCTTGTCAGCAATGGCGTTCAGATTTACCAGTTCCCCACAGACGACGAAGCTGTTGCAGAAATCAACTCCTCCATGAACGCTCATCTGCCGTTTGCTGTGGTGGGAAGTGGAGAGGAGGTTAAAGTGGGAAACAAGCTGGTGAGAGCCAGGCAGTACCCATGGGGAGTGGTACAGGTGGAGAATGAGAGCCACTGTGATTTTGTGAAGCTGAGGGAGATGCTGATCCGGGTGAACATGGAGGACCTGCGAGAGCAGACACACGCACGTCACTATGAGCTGTATCGCCGCTGCAAACTGGAGGAGATGGGCTTCAAAGACCCCGACGCTGACATGCAGCCATTCAGTCTGCAGGAAACGTACGTggctaagagagaggagtttgtcgCAGAGCTGCAGCGCATGGAGGAGGACATGCGCCAGATGTTCGTCGTCAAAGTAAAGGAGACGGAGGCTGAGCTGAAGGAGAGAGAGcgtgagCTGCATGATCGTTTCGAGCGTGTCAAGCGTATGCACCAGGAGGAGAAGAAGACTTTGGAAGAGAAGCGCAGAGAGCTAGAGGAGGAGATGAACTCCTTTAACAGGAGGAAGATGGCGGCTGAAACACTGCAGGCTCTCTCACTCCAGACCTCCAAAGACAAGAAAAGttgAGTTATTCACATTGTAAAGCTGAGCTGAAGGAatcaacattttcacatttttatcagGACAACAACATCTAATGGAGCAACGCCTCTTCTCCTTCTGTTATTAAATACCTGCTCACAGCACAAATGTAAATCCAGCAATAAGTAACTTTTATATGATCTGATTAATACTTCAACTGACTGGCACTTACACCGTACATGCATTAGTTACTCTGCACATGCATTAATTACACTGTACATACATTAGTTACACTGTACATACATTAGTTACACAGTACATGCTTTAGTTACGCTGCACACGCATTAGTTACGCTGCACACGCATTAGTTACCCTGCACATGCATTAGTTACACTGTACATGCACTGGTTACCCTGCACACGCATTAGTTACACTGCACACGCATTAGTTACCCTACACATGCATTAGTTACACTGTACATGCACTGGTTACCCTGCACACGCATTAGTTACACTGCACACGCATTAGTTACCCTACACATGCATTAGTTACACTGTACATGCATTAGTTACCCTACACATGCATTAGTTACACTGTACATGCACTGGTTACCCTGCACACGCATTAGTTACACTGCACACGCATTAGTTACCCTACACATGCATTAGTTACACTGTACATGCACTGGTTACCCTGCACACGCATTAGTTACGCTGTACACGCATTAGTTACACTGCACACGCATTAGTTACACTGCACACGCATTAGTTACACTGTACATGcattagtttcactgtacaTGCACTGGTTACCCTGCACACGCATTAGTTACGCTGTACACGCATTagttacactgcacacacattagTTACGCTGTACACGCATTAGTTACACTGTACACGCATTAGTTACACTGCACACGAATTAGTTACCCTGCACACACATTAGTTATCTGTACACGCATTAGTTACACTGTACACGCATTAGTTACACTGCACACGCATTAGTTACCCTGCACACACATTAGTTACGCTGTACACGCATTAGTTACCCTGCACACGCATTAGTTACACAGCACATGCATTAGTTACGCTATACGTGCATTAGTTTCACTGTACGTGCATTAGTTACCctgcttgtgcgatattgcataaataatcagcaccttctgaccaatcagatttgagaatggACATTTCCCCATTATGTTCAACTCTTCATGTTCCTGCTGCTAGGAGCCcagtgctgcagtgtgtagcttTGCCTTGTTCTGTCATTcagttcctctt

Function

NR:

description
PREDICTED: septin-8-A-like isoform X2

GO: NA

KEGG:

id description
K16939 SEPT6_8_11; septin 6/8/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918713.2 True 2683 mRNA 0.46 11 7422869 7434230

Neighbor

gene id symbol gene type direction distance location
sfxn1 LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919 coding upstream 4341 7401497 ~ 7418528 (+)
LOC113529540 cfap69 coding upstream 22444 7382078 ~ 7400425 (+)
LOC113529730 herpud2,LOC108275212,LOC105897640,LOC107686057 coding upstream 158173 7253320 ~ 7264696 (+)
LOC113547131 LOC108274606,LOC108435620 coding upstream 688955 6692793 ~ 6733914 (+)
LOC117598051 LOC108274605 coding upstream 742700 6679484 ~ 6680169 (+)
ccng1 ccng1,LOC107745080 coding downstream 5465 7439695 ~ 7444266 (+)
gabrb2a gabrb2,LOC107554707,LOC107684828 coding downstream 33542 7467772 ~ 7525350 (+)
atp10b atp10b coding downstream 102105 7536335 ~ 7574229 (+)
trnaa-agc_3 NA coding downstream 174811 7609041 ~ 7609113 (+)
trnaa-agc_4 NA coding downstream 177540 7611770 ~ 7611842 (+)
G144523 NA non-coding upstream 2049 7418761 ~ 7420820 (+)
G144486 NA non-coding upstream 155954 7239003 ~ 7266915 (+)
trnag-ccc_3 NA non-coding upstream 197321 7225478 ~ 7225548 (+)
LOC113530161 NA non-coding upstream 283497 7132850 ~ 7139372 (+)
G144444 NA non-coding upstream 460931 6958600 ~ 6961938 (+)
G144568 NA non-coding downstream 140878 7575108 ~ 7575491 (+)
G144661 NA non-coding downstream 141830 7576060 ~ 7576788 (+)
G144665 NA non-coding downstream 143898 7578128 ~ 7578377 (+)
G144715 NA non-coding downstream 251518 7685748 ~ 7688153 (+)
G144726 NA non-coding downstream 269851 7704081 ~ 7704763 (+)
trnaw-cca_12 NA other upstream 466353 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 469996 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 471447 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 623965 6796972 ~ 6798904 (+)
LOC113547145 NA other upstream 637432 6783516 ~ 6785437 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other downstream 13640 7447870 ~ 7466552 (+)
G145233 LOC107676291 other downstream 1407246 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 3103021 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 3120136 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3860898 11295128 ~ 11306318 (+)

Expression


Co-expression Network