stoml1 (stoml1)


Basic Information

Item Value
gene id stoml1
gene name stoml1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15891653 ~ 15895454 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918758.2
TCACgctacctagtgcactacatatccAATCAGTAGTGTAATGGGATTCGGTATGTTTCCAAACACGGAAGTAGTGTTTATGTTAGCGGGAACGATGGAAAAGTAGTTACTACCGTTAACACGTTAAAGAAGATCtacttttttgtaattattgacCGAAAATGTTTGGCAGGTCTTCAGGTTTTAACTATGAGATTCTGCCACAGAGAGATGACGGAAATAGAAATACTCCAGGCCTGTTTACATCCGGTCAGTCTCAGTATAGCAGCGGCTTCTCCTTTGACTACGTCCCTAAAATCCAAAACAACGATTTTACAGATGAAAGTCAAGGAATAATATCACGACTATGCAACTTGGTTGTTATATTCCTAGTTTTTCTTTGTGTGCTCATCACATTTCCCATATCTGCATGGTTTGTTCTAAAAacagtgCCCAACTATGAGAGAATTGTTGTATTCCGCCTGGGTCGCATCCGGCCTCCTAAGGGTCCAGGAGTGGTTTTAGTGCTTCCGCTCATTGACCAGTGGCAAAGGGTGGACCTAAGGACCAGGGCTTTCAACATCCCACCATGCAAGGTGACCACGAAAGACGGTGGCCTGGTCTCTGTCGGAGCGGATATCCAGTTCCGGATCTGGAATCCAGTCATGTCTGTGGTGGCGGTGCAGGATTTAAATGCTTCCACACGTCTTACTGCACAGAACGCTATGACTCAGACCCTGGGCAAGAGGACtgtgagagagatacagacagagaaagtCAAACTGGGCGAGTACCTTGGGATGGACGTAAATGATCTGACAAAGCCTTGGGGTTTGGAGGTGGACCGGGTCGAGCTGACCCTGGAAAGTGTGCTCCGTGCCCCAGATGAGTCTCACTCAGGGCCGCTCATCATGCCTCCCTCTGTCCCTGGCCTAGAGGGTCTCACTGAGCCAATACAGCAGCTCGCCATGCACTTTCTGGGGCAAAGTGCAGCAGCATCTCCACCTGCTAAAGATACAGTGCTCTTCACTGATGAGTTGAGCACAGAGGCTCCAGTAACTGAAAGCAGCAGTGTGGTAGAGGAGCTCCTAGCAGCAGTGAGACTGGTGCTGTCTGAGAGCTTGGTTAGGCAAGTGGGAGCCTGTTTCCAGTTTCACATCAGTACCAGCACTGGCCAAACCAGAAGGTACTATGTGGATCTAACTCAAAATAGTGGAACATGTGGTGTAGGTGAGGCGACGCAGCCAGATGTGTCTCTGAGTATGAGTGAGCAGGATATGATGGCCATGTTCCAGGGCAGGCTGCGGCCAATCACAGCATACAGCAGTGGAAGATTGAGAGTTCAGGGAGACTTGAACACTGCCATGAAACTAGACGCACTTGTTAAACTCATCAAACCTCTATGATGTCTAGTTACACATGAATTTAAAAGGTATATTTTGTGCCTTCACAACCCACAAACTTGTGTTACCATTTCAAATGTAAACAGAACTGTTTATATCATTTGGTGTTGTGACCTAATCATTTATCATAGctaaatgatataataataaatataatagggTTGCTGTAAAAATAGTATAAAAATTGGGCATCTGGATTAATAATTAGGACAGACCTTAATACAAGCATTCTTTCAAGTAAATCtcaaaaaaattg

Function

symbol description
stoml1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human STOML1 (stomatin like 1).

NR:

description
stomatin-like protein 1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0032934 sterol binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918758.2 True 1638 mRNA 0.45 6 15891653 15895454

Neighbor

gene id symbol gene type direction distance location
nr2e3 nr2e3,LOC105892475,LOC107595245,LOC107589312 coding upstream 914 15888107 ~ 15890739 (+)
hexa hexa coding upstream 9481 15874863 ~ 15882172 (+)
sigirr sigirr coding upstream 50146 15832179 ~ 15841507 (+)
fancf fancf coding upstream 139127 15751139 ~ 15752526 (+)
si:ch211-87j1.4 LOC108274534,LOC103040017,LOC108442681,LOC105913127,LOC107701590,LOC107695923,LOC107555711,LOC107723960,LOC107752489,LOC107571669 coding upstream 256663 15631055 ~ 15634990 (+)
LOC113530122 cyp11a,LOC108442685,LOC106561846 coding downstream 2222 15897676 ~ 15905329 (+)
stra6 stra6 coding downstream 73089 15968543 ~ 15980245 (+)
commd4 commd4,LOC107576274,LOC107757759,LOC107598913 coding downstream 110216 16005670 ~ 16008823 (+)
neil1 neil1 coding downstream 114383 16009837 ~ 16014155 (+)
trnav-aac_18 NA coding downstream 145721 16041175 ~ 16041247 (+)
G149276 NA non-coding upstream 73285 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 136741 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 179736 15711013 ~ 15711917 (+)
G149131 NA non-coding upstream 322166 15567836 ~ 15569487 (+)
G149091 cpne8,LOC108274474 non-coding upstream 407750 15483074 ~ 15483903 (+)
G149427 NA non-coding downstream 129390 16024844 ~ 16026512 (+)
G149428 NA non-coding downstream 132153 16027607 ~ 16028019 (+)
G149552 NA non-coding downstream 359230 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 432802 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 443136 16338590 ~ 16341963 (+)
LOC113529564 ano9,LOC108442698 other upstream 69062 15807990 ~ 15822591 (+)
svip svip other upstream 166562 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 238969 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2062322 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2114782 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1938783 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2287100 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2779556 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2826141 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2852373 18747827 ~ 18796259 (+)

Expression


Co-expression Network