ca12 (ca12)


Basic Information

Item Value
gene id ca12
gene name ca12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16028155 ~ 16043852 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918766.2
GGCGCCTCTGGACACCTTTGTTATGAGTCCTCTCATGAGGCAACAAACAGAGGCGAGGGGGAGCAGATTTACTTCGTTATATGGGCATCATGTCATTTCCTCTGCTAATAATGATCCTAATAGCCTTTCCACTGTCCTCCAGTGgtGGAAAATGGACATATGATGGGCCTGTTGGAGAACACCACTGGTCCAGGAATTACCCATACTGTGGAGGGGCATTCCAGTCTCCCATAAACTTCCAGCCTGAGCTGCTGAGATTTGATCCAGACCTGCAGCCCATTCAGCTGCAGGACTACAACCTGTCTAGCAAAGAGCAGCTCACCCTTAGCAACAATGGACACTCTGTGCAGCTGTCTCTGCCATCCCGGATGCACCTCTCTGGTCTGCCACATCGCTACTCAGCAGCTCAGCTTCACTTCCACTGGGGCTCCTCCAACACGCCGACCGGCTCTGAGCACACCATCAACGGCAAGCAGTTTGCTGCAGAGATGCATTTGGTTCATTTCAATTCTGCCAAGTATCCCAACATCTCCGTAGCAGTGGACAAGTCTGATGGTCTTGCTGTGCTGGGCATTTTTATTGAGgtgGGAGAGTTCAATCCTGCTTTCGACCAGTTCCTCAAATATGTCAACGGCATTAAATATaaagGTCAGAAAGTGCAGGTGGCAGGCTTTAACATCCGGGAGCTGCTTCCTGCTCGTCTGGATGAGTATTACCGTTACGATGGCTCTCTTACCACTCCCCCCTGCTACCCCAGCGTGCTCTGGACAGTGTTCAGGAATCCAGTCAGCATGTCTCTCAGACAGTACCTGGCTTTAGCCACCTCTCTGTTCTCTTCTCAAGCTCAAGAATCAGCCCCAATGCCTCTGTTTGGGAACTACCGTAAAACCCAGCTAATGGACAACAGAGTGGTTCTGGTCTCCTTCCAGCAGGGCTGGGGGCTGCATGGTGCCACTTCAGTGGCATCTCCCATGCAGAGGACGCTGGTCATCCAACAGCTGCTGAATGGAGACCTAGCAGATCTTGCAGATGGAGGACTGCACCATCTTTTGCCAAAGCTCCAAAGAAAGCCTTGGGCTGTTAAAAACTGGAGGAACAATCCAAAGCAACAGCGCTTGGGCCAAGCCACTGAGAAACATCAGAAGAACAAGGATCTTGACACCACTGGAAACAATCCATCGGTCTGGAAGAACACCCATGCAAGCTCCTATATGGGGATGTTTGGTATAAATGATGATGCCTTGTGTTTTGTATccctggaaaaaaatgtgtctgtTCGGCTCAGGAGACATCATGCAGATGCTCAGATGAGCCAAGCTCTGAGAAAAGCCGTGTTTCCAGAGCTGAACCTGAAGAGCTACTTAAACTGCAGATCTGATTTGGATCTGCAAACAATCAGACACCTTCTTCGTTCCAGACCCACTGATGAGGCAAATGAGCTGGATCAGGCCCTGACAAAAGTCAGTCAGGGGCATAAGCAGAGGTCCATGACACAGTACCAGGGCTCAGCACTGACCAAGCTAACAGGGCAGACCCAAGCTGCTGTCCTGAAGAATAGCCACAACATGGTGCCCACTAATCACAGACTGCAGCCTATGGAGTGGGAGGATTAAAACCCCACTGAGGCCATAAACACAGGCTGCAGAGTACATTATAATAGTCATCAAAGACCTTCTATCACGCAAGCCCTGAATATTGAACATTGAAACAAATTTTGTTTCAACTAGGAAGTAAGTGCAGACCACATAAAAAGATTTAAGGCAAAACATCAacagtgtatataaaattcataCAATATGACTCTTTCCTGGCAagaagatatttttatattttattgggttaggttctgttttatttgtgtcacAATAATTACATAGTAAAGCAATTACAGTCATTCAAAGTGGAATACAGTAGCAGAAGATGAAAAATAATGGTGCTTGGCTACATAAACATTCCTGTGTTTTATGTAAGTGTGTCAGGCGGCTTTTGATGTGTGTTTAGACCAAAGAGAAAGCACAAAGGAAGGAAGCCACCTTTTGTGGATTGCAAAACAATTTTGAATGGAGCATCTCGATCATGATGTGTAGAAGAAAATACAATAAAGCACTTTAACTGCA
>XM_026918767.2
GGCGCCTCTGGACACCTTTGTTATGAGTCCTCTCATGAGGCAACAAACAGAGGCGAGGGGGAGCAGATTTACTTCGTTATATGGGCATCATGTCATTTCCTCTGCTAATAATGATCCTAATAGCCTTTCCACTGTCCTCCAGTGgtGGAAAATGGACATATGATGGGCCTGTTGGAGAACACCACTGGTCCAGGAATTACCCATACTGTGGAGGGGCATTCCAGTCTCCCATAAACTTCCAGCCTGAGCTGCTGAGATTTGATCCAGACCTGCAGCCCATTCAGCTGCAGGACTACAACCTGTCTAGCAAAGAGCAGCTCACCCTTAGCAACAATGGACACTCTGTGCAGCTGTCTCTGCCATCCCGGATGCACCTCTCTGGTCTGCCACATCGCTACTCAGCAGCTCAGCTTCACTTCCACTGGGGCTCCTCCAACACGCCGACCGGCTCTGAGCACACCATCAACGGCAAGCAGTTTGCTGCAGAGATGCATTTGGTTCATTTCAATTCTGCCAAGTATCCCAACATCTCCGTAGCAGTGGACAAGTCTGATGGTCTTGCTGTGCTGGGCATTTTTATTGAGgtgGGAGAGTTCAATCCTGCTTTCGACCAGTTCCTCAAATATGTCAACGGCATTAAATATaaagGTCAGAAAGTGCAGGTGGCAGGCTTTAACATCCGGGAGCTGCTTCCTGCTCGTCTGGATGAGTATTACCGTTACGATGGCTCTCTTACCACTCCCCCCTGCTACCCCAGCGTGCTCTGGACAGTGTTCAGGAATCCAGTCAGCATGTCTCTCAGACAGTACCTGGCTTTAGCCACCTCTCTGTTCTCTTCTCAAGCTCAAGAATCAGCCCCAATGCCTCTGTTTGGGAACTACCGTAAAACCCAGCTAATGGACAACAGAGTGGTTCTGGTCTCCTTCCAGCAGGGTGACTTTACTTGGAGCTGGGGTGCTCTGATCTCTTTACTGGTGGCTTCTGGGTTGGGCATTCTGCTCATCATCACACTCATTTGGTGCTTTTTAAAGACAagGTCAAAGGCTGACCAAGAGAACATAAAAGTTGATGGATGCAAGCCACtggaaggaaaagagaagagcACAGGCATGTAACTCAGTCTTTCCTACCCCACATCTGAAGACCTGGGCAATGAAGTATCTTCCAAAATAAACCTTTGAAAAGTATATCTCTGGGAAGAACACcataaatcttttatatttgtgtttctgACCTTGACTTAAGGGTTCGGGGCTGGGTGGTTGCATtcgaatatatatatagatgacTCTGCCTAAGCGTGCATGGATTGCTCTCACTAGGTCAAGTTTTCTTCTAGCCACATTCCAGCATGGACTTCTCCCTTTGATTCATTTTTGAATAAAGCTGCCAAAACCCAAAAAAATTCTGAGTGGGGAGACAATG
>XM_026918768.2
CGCCTCTGGACACCTTTGTTATGAGTCCTCTCATGAGGCAACAAACAGAGGCGAGGGGGAGCAGATTTACTTCGTTATATGGGCATCATGTCATTTCCTCTGCTAATAATGATCCTAATAGCCTTTCCACTGTCCTCCAGTGgtGGAAAATGGACATATGATGGGCCTGTTGGAGAACACCACTGGTCCAGGAATTACCCATACTGTGGAGGGGCATTCCAGTCTCCCATAAACTTCCAGCCTGAGCTGCTGAGATTTGATCCAGACCTGCAGCCCATTCAGCTGCAGGACTACAACCTGTCTAGCAAAGAGCAGCTCACCCTTAGCAACAATGGACACTCTGTGCAGCTGTCTCTGCCATCCCGGATGCACCTCTCTGGTCTGCCACATCGCTACTCAGCAGCTCAGCTTCACTTCCACTGGGGCTCCTCCAACACGCCGACCGGCTCTGAGCACACCATCAACGGCAAGCAGTTTGCTGCAGAGATGCATTTGGTTCATTTCAATTCTGCCAAGTATCCCAACATCTCCGTAGCAGTGGACAAGTCTGATGGTCTTGCTGTGCTGGGCATTTTTATTGAGgtgGGAGAGTTCAATCCTGCTTTCGACCAGTTCCTCAAATATGTCAACGGCATTAAATATaaagGTCAGAAAGTGCAGGTGGCAGGCTTTAACATCCGGGAGCTGCTTCCTGCTCGTCTGGATGAGTATTACCGTTACGATGGCTCTCTTACCACTCCCCCCTGCTACCCCAGCGTGCTCTGGACAGTGTTCAGGAATCCAGTCAGCATGTCTCTCAGACAGTACCTGGCTTTAGCCACCTCTCTGTTCTCTTCTCAAGCTCAAGAATCAGCCCCAATGCCTCTGTTTGGGAACTACCGTAAAACCCAGCTAATGGACAACAGAGTGGTTCTGGTCTCCTTCCAGCAGGATGCTTCCATGAACATAAACCTGTCATTCAAACTCTGGTTTGAACCATGAGAACACTGCTGGGGGCTGCATGGTGCCACTTCAGTGGCATCTCCCATGCAGAGGACGCTGGTCATCCAACAGCTGCTGAATGGAGACCTAGCAGATCT
>XM_026918769.2
CGCCTCTGGACACCTTTGTTATGAGTCCTCTCATGAGGCAACAAACAGAGGCGAGGGGGAGCAGATTTACTTCGTTATATGGGCATCATGTCATTTCCTCTGCTAATAATGATCCTAATAGCCTTTCCACTGTCCTCCAGTGgtGGAAAATGGACATATGATGGGCCTGTTGGAGAACACCACTGGTCCAGGAATTACCCATACTGTGGAGGGGCATTCCAGTCTCCCATAAACTTCCAGCCTGAGCTGCTGAGATTTGATCCAGACCTGCAGCCCATTCAGCTGCAGGACTACAACCTGTCTAGCAAAGAGCAGCTCACCCTTAGCAACAATGGACACTCTGTGCAGCTGTCTCTGCCATCCCGGATGCACCTCTCTGGTCTGCCACATCGCTACTCAGCAGCTCAGCTTCACTTCCACTGGGGCTCCTCCAACACGCCGACCGGCTCTGAGCACACCATCAACGGCAAGCAGTTTGCTGCAGAGATGCATTTGGTTCATTTCAATTCTGCCAAGTATCCCAACATCTCCGTAGCAGTGGACAAGTCTGATGGTCTTGCTGTGCTGGGCATTTTTATTGAGgtgGGAGAGTTCAATCCTGCTTTCGACCAGTTCCTCAAATATGTCAACGGCATTAAATATaaagGTCAGAAAGTGCAGGTGGCAGGCTTTAACATCCGGGAGCTGCTTCCTGCTCGTCTGGATGAGTATTACCGTTACGATGGCTCTCTTACCACTCCCCCCTGCTACCCCAGCGTGCTCTGGACAGTGTTCAGGAATCCAGTCAGCATGTCTCTCAGACAGTACCTGGCTTTAGCCACCTCTCTGTTCTCTTCTCAAGCTCAAGAATCAGCCCCAATGCCTCTGTTTGGGAACTACCGTAAAACCCAGCTAATGGACAACAGAGTGGTTCTGGTCTCCTTCCAGCAGGGTGACTTTACTTGGAGCTGGGGTCAAAGGCTGACCAAGAGAACATAAAAGTTGATGGATGCAAGCCACtggaaggaaaagagaagagcACAGGCATGTAACTCAGTCTTTCCTACCCCACATCTGAAGACCTGGGCAATGAAGTATCTTCCAAAATAAACCTTTGAAAAGTATATCTCTGGGAAGAACACcataaatcttttatatttgtgtttctgACCTTGACTTAAGGGTTCGGGGCTGGGTGGTTGCATtcgaatatatatatagatgacTCTGCCTAAGCGTGCATGGATTGCTCTCACTAGGTCAAGTTTTCTTCTAGCCACATTCCAGCATGGACTTCTCCCTTTGATTCATTTTTGAATAAAGCTGCCAAAACCCAAAAAAATTCTGAGTGGGGAGACAATG
>XM_034307143.1
GGCTGCGGCAGTCGCGCGCTCCAAACTTCCACTTGTCCTTCTGTACAGCACTGATGATTTTCTCCTGAGGGGACTCGACACGACGTAACTGGGTCCTGAGGTAAACTCTGAGgtGGAAAATGGACATATGATGGGCCTGTTGGAGAACACCACTGGTCCAGGAATTACCCATACTGTGGAGGGGCATTCCAGTCTCCCATAAACTTCCAGCCTGAGCTGCTGAGATTTGATCCAGACCTGCAGCCCATTCAGCTGCAGGACTACAACCTGTCTAGCAAAGAGCAGCTCACCCTTAGCAACAATGGACACTCTGTGCAGCTGTCTCTGCCATCCCGGATGCACCTCTCTGGTCTGCCACATCGCTACTCAGCAGCTCAGCTTCACTTCCACTGGGGCTCCTCCAACACGCCGACCGGCTCTGAGCACACCATCAACGGCAAGCAGTTTGCTGCAGAGATGCATTTGGTTCATTTCAATTCTGCCAAGTATCCCAACATCTCCGTAGCAGTGGACAAGTCTGATGGTCTTGCTGTGCTGGGCATTTTTATTGAGgtgGGAGAGTTCAATCCTGCTTTCGACCAGTTCCTCAAATATGTCAACGGCATTAAATATaaagGTCAGAAAGTGCAGGTGGCAGGCTTTAACATCCGGGAGCTGCTTCCTGCTCGTCTGGATGAGTATTACCGTTACGATGGCTCTCTTACCACTCCCCCCTGCTACCCCAGCGTGCTCTGGACAGTGTTCAGGAATCCAGTCAGCATGTCTCTCAGACAGTACCTGGCTTTAGCCACCTCTCTGTTCTCTTCTCAAGCTCAAGAATCAGCCCCAATGCCTCTGTTTGGGAACTACCGTAAAACCCAGCTAATGGACAACAGAGTGGTTCTGGTCTCCTTCCAGCAGGGCTGGGGGCTGCATGGTGCCACTTCAGTGGCATCTCCCATGCAGAGGACGCTGGTCATCCAACAGCTGCTGAATGGAGACCTAGCAGATCTTGCAGATGGAGGACTGCACCATCTTTTGCCAAAGCTCCAAAGAAAGCCTTGGGCTGTTAAAAACTGGAGGAACAATCCAAAGCAACAGCGCTTGGGCCAAGCCACTGAGAAACATCAGAAGAACAAGGATCTTGACACCACTGGAAACAATCCATCGGTCTGGAAGAACACCCATGCAAGCTCCTATATGGGGATGTTTGGTATAAATGATGATGCCTTGTGTTTTGTATccctggaaaaaaatgtgtctgtTCGGCTCAGGAGACATCATGCAGATGCTCAGATGAGCCAAGCTCTGAGAAAAGCCGTGTTTCCAGAGCTGAACCTGAAGAGCTACTTAAACTGCAGATCTGATTTGGATCTGCAAACAATCAGACACCTTCTTCGTTCCAGACCCACTGATGAGGCAAATGAGCTGGATCAGGCCCTGACAAAAGTCAGTCAGGGGCATAAGCAGAGGTCCATGACACAGTACCAGGGCTCAGCACTGACCAAGCTAACAGGGCAGACCCAAGCTGCTGTCCTGAAGAATAGCCACAACATGGTGCCCACTAATCACAGACTGCAGCCTATGGAGTGGGAGGATTAAAACCCCACTGAGGCCATAAACACAGGCTGCAGAGTACATTATAATAGTCATCAAAGACCTTCTATCACGCAAGCCCTGAATATTGAACATTGAAACAAATTTTGTTTCAACTAGGAAGTAAGTGCAGACCACATAAAAAGATTTAAGGCAAAACATCAacagtgtatataaaattcataCAATATGACTCTTTCCTGGCAagaagatatttttatattttattgggttaggttctgttttatttgtgtcacAATAATTACATAGTAAAGCAATTACAGTCATTCAAAGTGGAATACAGTAGCAGAAGATGAAAAATAATGGTGCTTGGCTACATAAACATTCCTGTGTTTTATGTAAGTGTGTCAGGCGGCTTTTGATGTGTGTTTAGACCAAAGAGAAAGCACAAAGGAAGGAAGCCACCTTTTGTGGATTGCAAAACAATTTTGAATGGAGCATCTCGATCATGATGTGTAGAAGAAAATACAATAAAGCACTTTAACTGCA

Function

symbol description
ca12 Predicted to enable carbonate dehydratase activity. Predicted to be involved in one-carbon metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in muscle. Human ortholog(s) of this gene implicated in isolated hyperchlorhidrosis. Orthologous to human CA12 (carbonic anhydrase 12).

NR:

description
carbonic anhydrase 12 isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918766.2 True 2117 mRNA 0.47 9 16032911 16043550
XM_026918767.2 False 1425 mRNA 0.48 11 16028155 16043550
XM_026918768.2 False 1079 mRNA 0.51 10 16034004 16043548
XM_026918769.2 False 1341 mRNA 0.48 10 16028155 16043548
XM_034307143.1 False 2085 mRNA 0.47 9 16032911 16043852

Neighbor

gene id symbol gene type direction distance location
man2c1 man2c1,LOC107752311 coding downstream 3297 16014920 ~ 16024858 (-)
sema7a sema7a coding downstream 22792 15997889 ~ 16005363 (-)
ccdc33 ccdc33 coding downstream 91577 15904320 ~ 15936578 (-)
pkp3a LOC108275089 coding downstream 163453 15848138 ~ 15864702 (-)
ano5a ano5,LOC107728425 coding downstream 225528 15772414 ~ 15802627 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding upstream 77805 16121657 ~ 16140904 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding upstream 97744 16141596 ~ 16165999 (-)
cib2 cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862 coding upstream 137065 16180917 ~ 16199115 (-)
rps27l rps27l,zgc:136826,LOC107598918,LOC107752326 coding upstream 192291 16236143 ~ 16238157 (-)
LOC113530180 LOC108274564 coding upstream 207492 16251344 ~ 16254496 (-)
G149366 NA non-coding downstream 124253 15903692 ~ 15903902 (-)
G149364 NA non-coding downstream 125513 15902440 ~ 15902642 (-)
G149363 cyp11a non-coding downstream 129994 15897890 ~ 15898161 (-)
G149312 NA non-coding downstream 269654 15758284 ~ 15758501 (-)
G149305 fancf non-coding downstream 275685 15751159 ~ 15752470 (-)
LOC113529609 NA non-coding upstream 24577 16068429 ~ 16092930 (-)
G149495 NA non-coding upstream 49220 16093072 ~ 16095175 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding upstream 137054 16180906 ~ 16238108 (-)
LOC117597941 NA non-coding upstream 186762 16230614 ~ 16231809 (-)
G149643 NA non-coding upstream 205309 16249161 ~ 16251085 (-)
islr2 islr2,LOC107662462 other downstream 36061 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 308580 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 799170 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 940095 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 1215450 14810004 ~ 14812705 (-)
acsbg1 acsbg1 other upstream 97267 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1009501 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2160799 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2259290 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2260786 18304638 ~ 18304801 (-)

Expression


Co-expression Network