galk2 (galk2,LOC107557993,LOC107688931,LOC107662478,LOC107589326)


Basic Information

Item Value
gene id galk2
gene name galk2,LOC107557993,LOC107688931,LOC107662478,LOC107589326
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17284024 ~ 17291324 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918789.2
CAGTGCGCTATTTGAGAGGATGAAGCTGCTCCCAGATCTGTTTAACTTCTGCTAACATCCCAACGCTTCTCTTCTTCCGTGTAGCTGGAAAATGTTCCGGGTATGATCGTCATCTGCTTGTATTTCCAGTGTTACTTTTTTGCACCAGTTTCAGAAAACAGATTGCACAATATCTACGGTATATCATCTGTGTCCTAATGGCAGTAAATCCACCAAAAATCAAGGTGCTGCTCAGCGACAACGACAGagtcagaatcagaatgagctttattgccagACTAAAGAAACTCAAACAGgcatttattggaaaatatgaaGAAAGTCCTCTGTTTTATGCATGTGCTCCCGGCAGAGTGAATTTAATAGGAGAACACATTGACTACTGCGGTTATGCCGTCCTGCCTATGGCTATCGAGCAGAATATCCTTGCTGCTGTGTCAGTGAACAAGTCTCATATAATCCAACTGGCCAACACTGATCCCAAATACAAggATTTCACAGTGTCTGTCAGAGAAATAACCATAGACCCAAAAAATCCTCAATGGCATTATTACTTCCTTTGTGGAGTCAAAGGTGTTCAGGAACAGCTGAGCTTGTCTTCTCTGGCTGGGATTCGGTGTGTTGTGGATGGAACGATTCCAGCTAGTTCAGGCCTGTCTAGTTCCAGCGCTCTGGTCTGCTGCGCTGGCTTGGTCATGATGGAAGCCAACCAAAAGTCTGTCTCCAAAGTAATGTTGGCTGAGACATGTACCAAGTGTGAACGCTATATTGGAACTGAAGGAGGAGGGATGGATCAATCCATATCTTTCCTTGCTGAAGAGGGAACTGCAAAGCTGATCGAGTTCAATCCCCTGAGGAGCACAGATGTGAAGCTCCCAGATGGTGCTGTCTTTGTGATTGCCAACAGTTGTGTGGAGATGAACAAGGCAGCCACATCACACTTCAACATTAGAGTGGTGGAATGCCGCATTGCTACGAAAATACTGGCTAAGTTCAGAGGCCTGGAGTGGAGAAGCCTGCAGAAGCTGGGAGAACTGCAGACACAACTGGGCTCGAGTCTGGACAAGATGCTGGATTTGGTGGAGGAAGTCCTTCACCCTGAGCCCTACAGCAAAGAAGAAATTTGCAAGATTTTGGGAATCACTGCTCAGCAGTTGTGTGACAGTATCCTCAGTGCTAACACACAGCATGAGATCCACTTCAGGCTGTACCAACGGGCCAGGCACGTGTACAGTGAAGCGGCACGCGTGCTGCAGTTCAAGGCTGTGTGTGATTCTGCGCCTGCTGATGCTCTTCTGCAGCTTGGTGAGCTAATGAACCAAAGCCATACTAGCTGCAGAGACTTGTATGAGTGTAGCTGCCGAGAGCTGGACCAGCTGGTGGACATTTGTCgGAAGGCAGGTGCAGTGGGTTCCAGGTTAACAGGCGCTGGATGGGGAGGCTGTGCTGTTTCCATGGTACCCACTGAAAGGAGGGATTCTTTTCTCCAGCGAGTGAAGGAGCGCTACTACATGCCTGATGCTCGACGAGAAGCTCTGGTAAAGCAGAGCCTTTTTGTAACAAAgccaggaggaggagcagctaTTCTTACATCAGAATAAAAACTCAGGGAGATTTatgttttgagtttttttttcatcatgacCAAACTATTGATTTTATTGCTTTCAATCTTTGCCACTGAAAGGGAATGCGGTATATATTTCTTCAGATTGTAGGTCTGAttcaaaataattatatatacttTGCCTGATTTTATAAATCAAGTATGCACTGATTAAAAACTATGTAGTTTCTGCATAGTTCATGCAGTAAGTCATCTGAATGAACCAGGAACATAAGCTGCTGGATGGCTGCCATGGTAACTTAAATAACTAACTCTCCCAAAATATCACTCTCAACATTAATGTATTCTAAATAACTAACTCTCCCAAAATATCACTCTCAACATTAATGTATTCTATGTATGCATTCTGTGCTCACACTGAGGTTAATAAACAATAAGTAAACAGATCACAGAGAGGGACAATTTTAGAATGGACATTTTATATGtcatataaaaagtaaaatgaattGTATAAAATCcatgcatataaataaagatgacaAACAATT
>XM_026918790.2
TGCGCTATTTGAGAGGATGAAGCTGCTCCCAGATCTGTTTAACTTCTGCTAACATCCCAACGCTTCTCTTCTTCCGTGTAGCTGGAAAATGTTCCGGGTATGATCGTCATCTGCTTGTATTTCCAGTGTTACTTTTTTGCACCAGTTTCAGAAAACAGATTGCACAATATCTACGGTATATCATCTGTGTCCTAATGGCAGTAAATCCACCAAAAATCAAGGTGCTGCTCAGCGACAACGACAGACTAAAGAAACTCAAACAGgcatttattggaaaatatgaaGAAAGTCCTCTGTTTTATGCATGTGCTCCCGGCAGAGTGAATTTAATAGGAGAACACATTGACTACTGCGGTTATGCCGTCCTGCCTATGGCTATCGAGCAGAATATCCTTGCTGCTGTGTCAGTGAACAAGTCTCATATAATCCAACTGGCCAACACTGATCCCAAATACAAggATTTCACAGTGTCTGTCAGAGAAATAACCATAGACCCAAAAAATCCTCAATGGCATTATTACTTCCTTTGTGGAGTCAAAGGTGTTCAGGAACAGCTGAGCTTGTCTTCTCTGGCTGGGATTCGGTGTGTTGTGGATGGAACGATTCCAGCTAGTTCAGGCCTGTCTAGTTCCAGCGCTCTGGTCTGCTGCGCTGGCTTGGTCATGATGGAAGCCAACCAAAAGTCTGTCTCCAAAGTAATGTTGGCTGAGACATGTACCAAGTGTGAACGCTATATTGGAACTGAAGGAGGAGGGATGGATCAATCCATATCTTTCCTTGCTGAAGAGGGAACTGCAAAGCTGATCGAGTTCAATCCCCTGAGGAGCACAGATGTGAAGCTCCCAGATGGTGCTGTCTTTGTGATTGCCAACAGTTGTGTGGAGATGAACAAGGCAGCCACATCACACTTCAACATTAGAGTGGTGGAATGCCGCATTGCTACGAAAATACTGGCTAAGTTCAGAGGCCTGGAGTGGAGAAGCCTGCAGAAGCTGGGAGAACTGCAGACACAACTGGGCTCGAGTCTGGACAAGATGCTGGATTTGGTGGAGGAAGTCCTTCACCCTGAGCCCTACAGCAAAGAAGAAATTTGCAAGATTTTGGGAATCACTGCTCAGCAGTTGTGTGACAGTATCCTCAGTGCTAACACACAGCATGAGATCCACTTCAGGCTGTACCAACGGGCCAGGCACGTGTACAGTGAAGCGGCACGCGTGCTGCAGTTCAAGGCTGTGTGTGATTCTGCGCCTGCTGATGCTCTTCTGCAGCTTGGTGAGCTAATGAACCAAAGCCATACTAGCTGCAGAGACTTGTATGAGTGTAGCTGCCGAGAGCTGGACCAGCTGGTGGACATTTGTCgGAAGGCAGGTGCAGTGGGTTCCAGGTTAACAGGCGCTGGATGGGGAGGCTGTGCTGTTTCCATGGTACCCACTGAAAGGAGGGATTCTTTTCTCCAGCGAGTGAAGGAGCGCTACTACATGCCTGATGCTCGACGAGAAGCTCTGGTAAAGCAGAGCCTTTTTGTAACAAAgccaggaggaggagcagctaTTCTTACATCAGAATAAAAACTCAGGGAGATTTatgttttgagtttttttttcatcatgacCAAACTATTGATTTTATTGCTTTCAATCTTTGCCACTGAAAGGGAATGCGGTATATATTTCTTCAGATTGTAGGTCTGAttcaaaataattatatatacttTGCCTGATTTTATAAATCAAGTATGCACTGATTAAAAACTATGTAGTTTCTGCATAGTTCATGCAGTAAGTCATCTGAATGAACCAGGAACATAAGCTGCTGGATGGCTGCCATGGTAACTTAAATAACTAACTCTCCCAAAATATCACTCTCAACATTAATGTATTCTAAATAACTAACTCTCCCAAAATATCACTCTCAACATTAATGTATTCTATGTATGCATTCTGTGCTCACACTGAGGTTAATAAACAATAAGTAAACAGATCACAGAGAGGGACAATTTTAGAATGGACATTTTATATGtcatataaaaagtaaaatgaattGTATAAAATCcatgcatataaataaagatgacaAACAATT
>XM_026918793.2
ACTAAAGAAACTCAAACAGgcatttattggaaaatatgaaGAAAGTCCTCTGTTTTATGCATGTGCTCCCGGCAGAGTGAATTTAATAGATTCAATCCGTTACAGGAGAACACATTGACTACTGCGGTTATGCCGTCCTGCCTATGGCTATCGAGCAGAATATCCTTGCTGCTGTGTCAGTGAACAAGTCTCATATAATCCAACTGGCCAACACTGATCCCAAATACAAggATTTCACAGTGTCTGTCAGAGAAATAACCATAGACCCAAAAAATCCTCAATGGCATTATTACTTCCTTTGTGGAGTCAAAGGTGTTCAGGAACAGCTGAGCTTGTCTTCTCTGGCTGGGATTCGGTGTGTTGTGGATGGAACGATTCCAGCTAGTTCAGGCCTGTCTAGTTCCAGCGCTCTGGTCTGCTGCGCTGGCTTGGTCATGATGGAAGCCAACCAAAAGTCTGTCTCCAAAGTAATGTTGGCTGAGACATGTACCAAGTGTGAACGCTATATTGGAACTGAAGGAGGAGGGATGGATCAATCCATATCTTTCCTTGCTGAAGAGGGAACTGCAAAGCTGATCGAGTTCAATCCCCTGAGGAGCACAGATGTGAAGCTCCCAGATGGTGCTGTCTTTGTGATTGCCAACAGTTGTGTGGAGATGAACAAGGCAGCCACATCACACTTCAACATTAGAGTGGTGGAATGCCGCATTGCTACGAAAATACTGGCTAAGTTCAGAGGCCTGGAGTGGAGAAGCCTGCAGAAGCTGGGAGAACTGCAGACACAACTGGGCTCGAGTCTGGACAAGATGCTGGATTTGGTGGAGGAAGTCCTTCACCCTGAGCCCTACAGCAAAGAAGAAATTTGCAAGATTTTGGGAATCACTGCTCAGCAGTTGTGTGACAGTATCCTCAGTGCTAACACACAGCATGAGATCCACTTCAGGCTGTACCAACGGGCCAGGCACGTGTACAGTGAAGCGGCACGCGTGCTGCAGTTCAAGGCTGTGTGTGATTCTGCGCCTGCTGATGCTCTTCTGCAGCTTGGTGAGCTAATGAACCAAAGCCATACTAGCTGCAGAGACTTGTATGAGTGTAGCTGCCGAGAGCTGGACCAGCTGGTGGACATTTGTCgGAAGGCAGGTGCAGTGGGTTCCAGGTTAACAGGCGCTGGATGGGGAGGCTGTGCTGTTTCCATGGTACCCACTGAAAGGAGGGATTCTTTTCTCCAGCGAGTGAAGGAGCGCTACTACATGCCTGATGCTCGACGAGAAGCTCTGGTAAAGCAGAGCCTTTTTGTAACAAAgccaggaggaggagcagctaTTCTTACATCAGAATAAAAACTCAGGGAGATTTatgttttgagtttttttttcatcatgacCAAACTATTGATTTTATTGCTTTCAATCTTTGCCACTGAAAGGGAATGCGGTATATATTTCTTCAGATTGTAGGTCTGAttcaaaataattatatatacttTGCCTGATTTTATAAATCAAGTATGCACTGATTAAAAACTATGTAGTTTCTGCATAGTTCATGCAGTAAGTCATCTGAATGAACCAGGAACATAAGCTGCTGGATGGCTGCCATGGTAACTTAAATAACTAACTCTCCCAAAATATCACTCTCAACATTAATGTATTCTAAATAACTAACTCTCCCAAAATATCACTCTCAACATTAATGTATTCTATGTATGCATTCTGTGCTCACACTGAGGTTAATAAACAATAAGTAAACAGATCACAGAGAGGGACAATTTTAGAATGGACATTTTATATGtcatataaaaagtaaaatgaattGTATAAAATCcatgcatataaataaagatgacaAACAATT
>XM_026918794.2
GCGCTATTTGAGAGGATGAAGCTGCTCCCAGATCTGTTTAACTTCTGCTAACATCCCAACGCTTCTCTTCTTCCGTGTAGCTGGAAAATGTTCCGGGTATGATCGTCATCTGCTTGTATTTCCAGTGTTACTTTTTTGCACCAGTTTCAGAAAACAGATTGCACAATATCTACGGTATATCATCTGTGTCCTAATGGCAGTAAATCCACCAAAAATCAAGGTGCTGCTCAGCGACAACGACAGGAGAACACATTGACTACTGCGGTTATGCCGTCCTGCCTATGGCTATCGAGCAGAATATCCTTGCTGCTGTGTCAGTGAACAAGTCTCATATAATCCAACTGGCCAACACTGATCCCAAATACAAggATTTCACAGTGTCTGTCAGAGAAATAACCATAGACCCAAAAAATCCTCAATGGCATTATTACTTCCTTTGTGGAGTCAAAGGTGTTCAGGAACAGCTGAGCTTGTCTTCTCTGGCTGGGATTCGGTGTGTTGTGGATGGAACGATTCCAGCTAGTTCAGGCCTGTCTAGTTCCAGCGCTCTGGTCTGCTGCGCTGGCTTGGTCATGATGGAAGCCAACCAAAAGTCTGTCTCCAAAGTAATGTTGGCTGAGACATGTACCAAGTGTGAACGCTATATTGGAACTGAAGGAGGAGGGATGGATCAATCCATATCTTTCCTTGCTGAAGAGGGAACTGCAAAGCTGATCGAGTTCAATCCCCTGAGGAGCACAGATGTGAAGCTCCCAGATGGTGCTGTCTTTGTGATTGCCAACAGTTGTGTGGAGATGAACAAGGCAGCCACATCACACTTCAACATTAGAGTGGTGGAATGCCGCATTGCTACGAAAATACTGGCTAAGTTCAGAGGCCTGGAGTGGAGAAGCCTGCAGAAGCTGGGAGAACTGCAGACACAACTGGGCTCGAGTCTGGACAAGATGCTGGATTTGGTGGAGGAAGTCCTTCACCCTGAGCCCTACAGCAAAGAAGAAATTTGCAAGATTTTGGGAATCACTGCTCAGCAGTTGTGTGACAGTATCCTCAGTGCTAACACACAGCATGAGATCCACTTCAGGCTGTACCAACGGGCCAGGCACGTGTACAGTGAAGCGGCACGCGTGCTGCAGTTCAAGGCTGTGTGTGATTCTGCGCCTGCTGATGCTCTTCTGCAGCTTGGTGAGCTAATGAACCAAAGCCATACTAGCTGCAGAGACTTGTATGAGTGTAGCTGCCGAGAGCTGGACCAGCTGGTGGACATTTGTCgGAAGGCAGGTGCAGTGGGTTCCAGGTTAACAGGCGCTGGATGGGGAGGCTGTGCTGTTTCCATGGTACCCACTGAAAGGAGGGATTCTTTTCTCCAGCGAGTGAAGGAGCGCTACTACATGCCTGATGCTCGACGAGAAGCTCTGGTAAAGCAGAGCCTTTTTGTAACAAAgccaggaggaggagcagctaTTCTTACATCAGAATAAAAACTCAGGGAGATTTatgttttgagtttttttttcatcatgacCAAACTATTGATTTTATTGCTTTCAATCTTTGCCACTGAAAGGGAATGCGGTATATATTTCTTCAGATTGTAGGTCTGAttcaaaataattatatatacttTGCCTGATTTTATAAATCAAGTATGCACTGATTAAAAACTATGTAGTTTCTGCATAGTTCATGCAGTAAGTCATCTGAATGAACCAGGAACATAAGCTGCTGGATGGCTGCCATGGTAACTTAAATAACTAACTCTCCCAAAATATCACTCTCAACATTAATGTATTCTAAATAACTAACTCTCCCAAAATATCACTCTCAACATTAATGTATTCTATGTATGCATTCTGTGCTCACACTGAGGTTAATAAACAATAAGTAAACAGATCACAGAGAGGGACAATTTTAGAATGGACATTTTATATGtcatataaaaagtaaaatgaattGTATAAAATCcatgcatataaataaagatgacaAACAATT

Function

symbol description
galk2 Predicted to enable galactokinase activity. Predicted to be involved in galactose metabolic process. Predicted to act upstream of or within carbohydrate phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human GALK2 (galactokinase 2).

NR:

description
N-acetylgalactosamine kinase

GO: NA

KEGG:

id description
K18674 GALK2; N-acetylgalactosamine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918789.2 True 2115 mRNA 0.44 11 17284024 17291324
XM_026918790.2 False 2082 mRNA 0.44 10 17284024 17291321
XM_026918793.2 False 1854 mRNA 0.44 9 17284024 17288446
XM_026918794.2 False 1992 mRNA 0.44 9 17284024 17291320

Neighbor

gene id symbol gene type direction distance location
sqor sqrdl,LOC107739076,LOC107557991,LOC107662477,LOC102778185 coding downstream 28860 17249538 ~ 17255164 (-)
ctdspl2a ctdspl2a,LOC108275364,LOC107712523,LOC107589331,LOC107688927,LOC107739078,LOC107557990 coding downstream 35612 17237113 ~ 17248412 (-)
scaper scaper,LOC107662441,LOC107712524,LOC107688925,LOC106561156 coding downstream 49167 17140415 ~ 17234857 (-)
etfa etfa,LOC107712526,LOC107557988 coding downstream 155740 17113754 ~ 17128284 (-)
c2cd4a LOC108275248,LOC108433606 coding downstream 394017 16888337 ~ 16890007 (-)
tjp1b LOC108274984,LOC108414298 coding upstream 31874 17323198 ~ 17388941 (-)
duox duox1,LOC108436899,LOC107712499,LOC106561775 coding upstream 114086 17405410 ~ 17420203 (-)
apba2a LOC108275011,LOC106584731 coding upstream 133583 17424907 ~ 17434437 (-)
parp16 parp16,LOC107589319,LOC107595248,LOC107662480 coding upstream 157284 17448608 ~ 17455078 (-)
dldh dld,dldh coding upstream 262768 17554092 ~ 17560823 (-)
G150130 NA non-coding downstream 133543 17125414 ~ 17150481 (-)
G150139 NA non-coding downstream 135416 17147901 ~ 17148608 (-)
LOC117597939 NA non-coding downstream 205939 17075246 ~ 17078085 (-)
G150036 NA non-coding downstream 231512 17028117 ~ 17052512 (-)
G150089 NA non-coding downstream 264841 17018956 ~ 17019183 (-)
G150237 NA non-coding upstream 74126 17365450 ~ 17365787 (-)
G150284 NA non-coding upstream 149549 17440873 ~ 17444825 (-)
G150310 NA non-coding upstream 212962 17504286 ~ 17504936 (-)
G150340 NA non-coding upstream 259766 17551090 ~ 17574660 (-)
G150424 NA non-coding upstream 307464 17598788 ~ 17599194 (-)
LOC113529460 nrg4 other downstream 225118 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 1055690 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 1291930 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 1564449 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 2055039 15219970 ~ 15228985 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 913327 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1011818 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1013314 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1062650 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 1133995 18425319 ~ 18428973 (-)

Expression


Co-expression Network