cops2 (cops2,LOC107557994,LOC107589327)


Basic Information

Item Value
gene id cops2
gene name cops2,LOC107557994,LOC107589327
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17291387 ~ 17298220 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918795.2
atgcgcagtacgtCGTACACGGTGATTATTTTGAGGCGCGGAGGATTGTGGGAGTGTTTCGGCCCTATTCACCGGTCAAAATGTCTGACATGGAAGATGATTTCATGTGCGATGATGAAGAAGATTATGATCTGGAGTACTCAGAGGACAGCAACTCTGAGCCAAATGTTGACTTGGAGAATCAGTACTATAATTCTAAAGCCCTAAAGGAAGATGATCCCAAAGCTGCTTTGAGCAGCTTTCAGAAGGTGCTGGAGCTTGAGGGTGAAAAAGGAGAATGGGGTTTCAAAGCACTAAAACAGATgattaaaatcaattttaagTTGACAAACTTTCCGGAAATGATGAACCGATACAAACAGCTGTTGACGTATATACGAAGTGCTGTCACAAGGAACTACTCTGAGAAATCCATCAACTCTATTCTAGATTACATTTCAACCTCCAAACAGATGGACTTGCTTCAGGAATTCTATGAGACGACTCTAGAAGCATTAAAGGACGCCAAAAATGACAGACTGTGGtttaaaaccaatacaaagTTAGGCAAGTTGTACTTGGAgagagaagagtatggaaaaCTTCAGAAAATTCTCAGGCAGTTGCACCAGTCATGTCAGactgatgatggtgaagatgatCTGAAGAAAGGTACACAGTTGCTGGAGATTTACGCTTTGGAAATTCAGATGTACACAgcccaaaaaaacaacaagaagcTGAAAGCTCTCTATGAGCAGTCTTTACATATCAAGTCAGCAATTCCACATCCACTCATCATGGGAGTCATCCGAGAATGTGGTGGAAAAATGCACTTAAGGGAGGGAGAGTTCGAGAAGGCACACACAGACTTTTTTGAAGCATTCAAAAATTACGATGAATCCGGAAGCCCCAGACGAACTACGTGTTTAAAGTACTTGGTCTTGGCCAACATGCTGATGAAGTCAGGAATAAACCCATTTGATTCTCAAGAgGCAAAACCCTACAAGAATGATCCAGAAATTCTAGCAATGACGAACTTGGTAAGtGCCTACCAGAACAATGACATCACAGAGTTTGAGAAAATCCTAAAGACGAATCACAGTAACATAATGGATGACCCCTTCATCAGAGAACATATTGAAGaGCTGTTACGGAACATAAGAACGCAAGTGCTCATCAAATTAATTAAGCCTTACACTAGGATACACATACCTTTCATTTCAAAGGAATTGAACATCGATGTTGTGGATGTGGAAAGCTTGCTTGTGCAGTGTATATTAGACAACACAATCAATGGCCGCATTGACCAGGTCAACCAGCTGTTGGAGCTTGATCACCAGAAGAGAGGTGGTGCTCGATATACAGCCCTAGACAAATGGACCAATCAGCTGAATTCACTCAACCAGGCCATTGTCAGTAAACTGGCTTGAGTGACTACTCGAGACCCTGAAAAACAGTCCATTCACCAGACACCCAGATGGCTCAAAGGGCTGTCAGAGACACAAACTCCTTTCAGGTCCTAAATCCCCTGATCACTTTATGACATGAAGTGTGCGCTTAAACTGGCTAGTTTGTGTTATGCAGCTGCTGATACTTAAACCCCAACAGCTTTGTAAGTCCCAGACAACACAGAAACGCCCAAAGAAAATCTGCTGTTCTGAATCCTTGAAGTCTGTTCTTTAGACTATATTGGAGTCATCTTGGGAGGTGTTATTTTAATCACATGTCTTGACATTTGTTTATAGCAAACATTTGAAAGGTATaccttttaccttttttttttagaggtgaCGTGATGCTCTGTAATACAAGGAAGAATGTTTATCTGTTGAACACTGTcaaagcatgttttgtttttgctttaagaGCCTCTTTCCAAGATTTAGGAAGATGAACTATTGCACCAGTGAATAAAGTAATTGCTCAAGGTATTCTGgttttcacaaataaataagatttgGGTGGGTTTAGAAAAAGACTGTACCTCTAAGATGGTTGAGTCATAGCATGAGAATACATATTAATGAATCTCAGTTAAATTATGGCTACATTGAATTTGAAACCTCACCCCTGGTCATAACTTGTGTTCTGTTGTTTCATAtttgaacaataaataaaaggatGCATTTGTTGCTTCAGAAAA

Function

symbol description
cops2 Predicted to be involved in negative regulation of nucleic acid-templated transcription and protein deneddylation. Predicted to be located in nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS2 (COP9 signalosome subunit 2).

NR:

description
COP9 signalosome complex subunit 2-like

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12176 COPS2, CSN2, TRIP15; COP9 signalosome complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918795.2 True 2125 mRNA 0.40 13 17291387 17298220

Neighbor

gene id symbol gene type direction distance location
atp8b4 atp8b4 coding upstream 7461 17262433 ~ 17283926 (+)
isl2a isl2,isl2a,LOC107589357,LOC107662481,LOC107712508 coding upstream 155352 17130857 ~ 17136035 (+)
tmem266 tmem266 coding upstream 177784 17061938 ~ 17113603 (+)
lactb lactb coding upstream 239176 17046001 ~ 17052211 (+)
tpm1 tpm1,LOC106573503,LOC107659515,LOC107739081,LOC107712528,LOC106946143,LOC103141214,LOC107589334 coding upstream 248909 17028077 ~ 17042478 (+)
cep152 cep152 coding downstream 521 17298741 ~ 17315242 (+)
zgc:101540 slc27a2,LOC108414297 coding downstream 18453 17316673 ~ 17322858 (+)
duox2 duoxa1 coding downstream 121988 17420208 ~ 17423465 (+)
eif3ja eif3j,LOC108275014,LOC107688938,LOC107739069 coding downstream 139014 17437234 ~ 17443674 (+)
si:ch73-330k17.3 LOC108275018,LOC108436903,LOC107688943 coding downstream 147141 17445361 ~ 17447657 (+)
G150152 sqrdl non-coding upstream 36050 17253667 ~ 17255337 (+)
G150148 NA non-coding upstream 54441 17236641 ~ 17236946 (+)
G149729 NA non-coding upstream 717515 16540599 ~ 16573872 (+)
LOC117597920 NA non-coding upstream 817159 16460380 ~ 16474228 (+)
G149723 NA non-coding upstream 842247 16446039 ~ 16449140 (+)
G150261 LOC108275011 non-coding downstream 131923 17430143 ~ 17434377 (+)
G150265 NA non-coding downstream 148029 17446249 ~ 17446460 (+)
G150268 NA non-coding downstream 158700 17456920 ~ 17457135 (+)
G150407 NA non-coding downstream 404334 17702554 ~ 17702758 (+)
G150590 LOC108274445 non-coding downstream 534546 17832766 ~ 17840449 (+)
LOC113529564 ano9,LOC108442698 other upstream 1468796 15807990 ~ 15822591 (+)
svip svip other upstream 1566296 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 1638703 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 3462056 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 3514516 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 536017 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 884334 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 1376790 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 1423375 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 1449607 18747827 ~ 18796259 (+)

Expression


Co-expression Network