c9h11orf96 (c14h11orf96,cunh11orf96,clg19h11orf96,si:ch1073-281m9.1,LOC103025886,LOC107580776,LOC107661503,LOC107696240,LOC107575890)


Basic Information

Item Value
gene id c9h11orf96
gene name c14h11orf96,cunh11orf96,clg19h11orf96,si:ch1073-281m9.1,LOC103025886,LOC107580776,LOC107661503,LOC107696240,LOC107575890
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18652771 ~ 18654175 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918806.2
TGTTTTCTTGCTCATGTTGAAATAACCCAGATACAGAGACACTAACAGCAGAGCATCTAAGAAAACACACTGTGCTGCCCAGCAAGGCAGAATCCAAGGACTTCTGACGCACTAGCTTTTGTGTAGCCAGAAGGGAAGCTTGGTGGACTGAAGATTATCACCACATGAGGACATAAAGCATTTTGAAGTGTGCTGCGATTTGGGACTGCTGCAATCTGTGAGTACACAAACTCTTTTGGAGTGGcaagaggaaaaacagagaaaattcGCTCTGGAatctttaaaaagtgaaaagaggagagaaggagaagcaACTAGTGCACCTCAGAGGATAAACACACAGCAATTCCCATCTCCAGCGATGACTGTACGTCCAGTGGAGACAGTGGGTTTCCCTATGCTTCCTGCTCACTTGATGGCTTCTGCTATGGAAGAGTTCCCACAGCAGCTCCCTGTACCCAAGGGCCCAGCTCGGGGCCGCAGTCGTCCCAAGCGACCGCGAGAGACCCGCTTCAAAACGCAGCCAGTGACCTTTGCAGAGATTGCAGAAGTAGAGGAGGAAGGAGCTTCGCCCCTGGAGGAGGAGAGAGCAAGGCGCTCCTTCTTGCAGTCACTGGAGAGTCTAAGGAGGAGCACACAATCCCTGCAACACACAGGAACCACACAGAGCGGCAGAACCAGCACACCAACACAGGCTAGCTTGGACTCAAGTGACTCAGACTCAGCccaatgagagagaaagagagagagagaaagagagagagagagagaaagagagaaagagagagagagagagatctgtctTCTACATGTGATCTGTTCTTCTGTTGTAAAGCTTACTTACTGGACTGGTCTCCAGTGTGCTAAGCTCCATGCACATAACCTCTTGAAGCTtactttgcagctataacataGTTACAGTATTTTATACACATACTTGTGTCACTCCAGTCAAGCAACGGCAAGCTGACTAGCTTCTGCTTCTTACTTGTAGCGTTTCAAATTTTCTAACTACTTAAATACCTTAAATATTCCAGAAATATTCGCTATACTTGAGGCCTATTACTCATTGTGAGGTTTGAAATGTTGATATGTTCTTGTTACAATTCCACTGGACAAGACAGATGGTTTATCACTGTTTATCTTTGCCACTTTATCATGATCGTGCAGTCAAGTCATTGATGGAAGAACTGAATCTGCTCTGTAGACACCACACTCGGAATAGGAGCTTTGTTCATATGACTTGAGTATGCCAGAGTAGTACATCTACTAATGAACTCAGATGTTTATCTTATTAATAACAGTGAAATTAGAAATGTTTTGTTGACACTGTCGGCTTGTAAggtcacaagaaaaaaaatgaaattatgtcTTTATACtattgttttacttttactatctttgt

Function

symbol description
si:ch1073-281m9.1 Orthologous to human C11orf96 (chromosome 11 open reading frame 96).

NR:

description
PREDICTED: uncharacterized protein C11orf96 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918806.2 True 1405 mRNA 0.44 1 18652771 18654175

Neighbor

gene id symbol gene type direction distance location
alkbh3 alkbh3 coding upstream 7065 18636689 ~ 18645706 (+)
hsd17b12a hsd17b12,LOC107696265,LOC107661451,LOC107573907,LOC107716735,LOC107753600 coding upstream 18003 18622188 ~ 18634768 (+)
api5 api5,LOC107696269,LOC107753602 coding upstream 66079 18579111 ~ 18586692 (+)
prr5l prr5l,LOC107573861 coding upstream 75405 18568613 ~ 18577366 (+)
brd1b LOC108436948,LOC108275266,LOC107661448 coding upstream 148780 18491745 ~ 18503991 (+)
ticrr ticrr coding downstream 5466 18659641 ~ 18672052 (+)
glg1a LOC108274991,LOC108428438,LOC107559147 coding downstream 30962 18685137 ~ 18707311 (+)
tdrd12 tdrd12 coding downstream 74358 18728533 ~ 18754646 (+)
si:ch1073-174d20.2 LOC108275319,LOC108428436,LOC107723988,LOC107688752,LOC107570650,LOC107701574,LOC103465653,LOC106927143 coding downstream 106928 18761103 ~ 18769419 (+)
hprt1l hprt1l,LOC108274759,LOC107701578,LOC107723981,LOC107688789,LOC108428369,LOC107559153,LOC105895651,LOC107570646,LOC105022178 coding downstream 145168 18799343 ~ 18806123 (+)
LOC113530068 NA non-coding upstream 31950 18601539 ~ 18620821 (+)
G150958 NA non-coding upstream 100634 18551893 ~ 18552137 (+)
G150954 NA non-coding upstream 114916 18537261 ~ 18537855 (+)
G150952 NA non-coding upstream 122063 18530139 ~ 18530708 (+)
G150932 LOC108436944 non-coding upstream 208719 18425317 ~ 18444052 (+)
G151093 NA non-coding downstream 291100 18945275 ~ 18945942 (+)
G151084 NA non-coding downstream 300874 18955049 ~ 18997932 (+)
G151134 NA non-coding downstream 455668 19109843 ~ 19110973 (+)
G151395 NA non-coding downstream 572474 19226649 ~ 19227893 (+)
G151417 NA non-coding downstream 663811 19317986 ~ 19393161 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 468738 18182554 ~ 18184033 (+)
G150589 LOC108274445 other upstream 810236 17834237 ~ 17842535 (+)
LOC113529564 ano9,LOC108442698 other upstream 2830180 15807990 ~ 15822591 (+)
svip svip other upstream 2927680 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 3000087 15563306 ~ 15652684 (+)
rfwd3 rfwd3,LOC107754982 other downstream 20835 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 67420 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 93652 18747827 ~ 18796259 (+)
faap24 faap24 other downstream 466976 19121151 ~ 19125201 (+)
G151401 NA other downstream 606449 19260624 ~ 19263893 (+)

Expression


Co-expression Network