LOC113529554 (tlx3)


Basic Information

Item Value
gene id LOC113529554
gene name tlx3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 11324357 ~ 11335757 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918811.2
GGAATAAGCCCAGCCGAGGAGGGTTCAGTACAGATGTGACGGAATATGTCGGAATTTCAGAAACAGAACCGAAAGAAAAGCACAAGAGAGGAgaaaatggacagacagactCTGAAATTGATCTCAGTTACTCTGCGTTTTGCGTGATTTGGTTTGATTTCCTCAACCCCCGCTCGGGTTGTAACCGGGGAATATGGAAAGCGCGCAAAGTCCGAGACCGGAGCAGTCATCTAAAGCAAGCCATGAGCCCATCCGTTTCGGTATAGACCGGATCCTCGGTTCCTCTGAGCGGCAGCATGGCTCTGAGAGCAGCACGGACAGCCACACCGGGACCACCACTACATTCACTGCCCTGCTCGCCCCGCTCTCTGCTTTTCCTGGCTCTTTGGAGGACCCGAGCGAGTTCGTGCCGAACAGGACTCTGGGACACCGCGGGGTGATCCGGGTCCCGGCGCACAGACCGCTTGGAGCCGCCATAGCGCCGCCTGTGGTGAGCGCAGCTCCGGGCTTCGGGCCGCTTTGCTTCCCCTGGGTGGATAATCACCGCAGATTCACCAAAGACAGACTGCCAGctctTCTAGCACTGCCCATTACTCGGCGCATTGGTCACCCGTACCAGAACCGCACTCCGCCCAAGCGGAAGAAGCCGCGCACGTCATTTTCCCGCGTGCAGATCTGCGAGCTGGAGAAGCGCTTTCACCGGCAGAAGTACCTGGCCAGTGCTGAGCGCGCGGCTCTCGCCAAGAATCTTAAAATGACCGACGCTCAGGTCAAAACGTGGTTCCAGAACCGAAGAACTAAATGGAGGAGACAGACGGCTGAGGAGAGGGAGGCCGAGCGCCAGCAGGCTAATCGGATGCTACTGCAGCTGCAGGCTGATGCCCTCCAGAAGTCTATCAGTGAGTCAGTGCCTGTAGATCCTCTGTGTGTGCACAACTCTTCACTGTATGCCCTGCAGAACCTGCAGCCATGGGCTCAAGACAAAGCAGGCAAAATTGCCACCACTACTTCACTGGCCTAAATTAATACCGGTGAAATGCTAAGCCCATGAGGAGTGACTGTGATGGTACAACAACTAAACAACTGGGAATGTGTTGCAAGATAAGTAAGATAGGCTTTATGAGCTTGGTATCATATTGAGTAGATGACTTTTTTTGATGAACATCAAATATGCGCAAAGCTGTAGATATTTTTGAGGACGTATTCAGATTTATACCAATTCTACATCCTGGGATATGCATCAGGAGAATTTCCTATACTCCAAAtgctttatattaaatgtaaaggCTCATTCACAGTCTTTGAGTTGATGCTGTTGCACAACAATCTTCAAAACTCAATACTCAGACATGTGCAATCTGAAAGGTGGCTTATTTGTGTGAAGGAAATGTATACTCCACAGTAACCTCCCAGGAGTCAAACATGAAATAACACTGCAGTGGGAATTGTGAATGTAAAATAACACAATCATGGTTTATGATTATAAGacatttttacttcttttacaacatgttttcttttcatgatGGACAGAAAGGAAAATCTGTGGCTGCAAATCCAAACGttattcaaaacaaacaaaaggtaATATCTGAACATCCAGGcaaaaacacattattgttgtcatcatcatttttttctccattttccaaGTCCTGTCCCAGCTGATGTTCCAGTGTTGTTGGCACAGatatagactgtggaatatcTGATTATATGTTtgactttttatataaatgagtATAGTGTACATTTCTACTCATCGCCAGTGACTGTGTTGTTGAAAATGAAGTTTACTATTCTTCTGAATTTCCTATGTTTACTTGCTTTGCGACTAATAGTACTGAACTGTGTCTTGGGCTTCTACATAGTGTTTTGGGCCAAACTACAGCATATATCATGGCCCAGTTTCTTTGCCACTACAAGACAGAAAGTTGCCATGTTGTAATCCTGGATTTAAAGCCCAGTAATTAACATGATCCTTGTAAATCACAAACACTTTGCATAGGAATACGCTTGAGACAAATTGAAGTTCCGCCTTTAATgggaatactccagtgtttcCTCTCTCAATGTACTGCATCTGTAgcgtatgtgtgattaccactgCCAAGAATTTGGATTGTGTGATTACCACAAGAATGTGTGATTACCACTGACAAGAAGTTTCCCTgtactgtgaaaataaaaataaaatttaaaaaaaatttttgaacTAAAAACTCAAAGTCTAAGGGCCTTTGTTGGGGCATCAATAAACATTAGTATTTCTACTAATTTTTatagaacatttttaatgtattattcagTCAAAGGAATTTGTAAATTACTAATGAAttgctttaaatgaaatattttgaaatgaatcATAAATGATTATGCATGTATACCGAAATAGAAAAATACCTTTTAATGTATTACTCCAGtgtagttttgaatttgcattaCTTTAAAAGTTTCCTGACTGAAATGAACAACTGCCTTCTATTATAAGCGAGGTTTAGGTCTCCATGTTTTCCGTTCTTTATTAAGTGCAGAGTAACACATCCAATTCGTTATCTgcggtaatcacacatacactacaaaCCCTGTGGATAGAGATTATGTTGATAAGTGCGGTCTTACTTTATATTAAGTGTCTTTAATATCTGTGTAGCTATATGTAAACTACACAGGCAACTATATACCTAGTAAGAATGTCTGCTCTGTAACAAACAGTTTACtgatgtaaatacataaatgcacATGACTTCAGTTTTGGCCCAAACAGgacattctctgtctctctctcactgaaaGTGTAACGGGGGTAATAACTTTTGTATGAACTGCTGGTATTTTGAAAGTGTAACAATATAATAGCATAAAGGTATGTAATTACTGCAAATTACAGATTGGTGTTAATCCATCTGATTTGCTGGGATGGCATGTGACAAGACAAATATACCACAGAAATTATATAAAAGTTAGACTTTAACTTTTGTTAAGATGCATACTTGCATAAGATTTACTTCTGCAATACATCAGTAACAGTGCATACATTCACAGTAATTACATTATAGCTGCCTGTAtcattattatacacattattatagGCACTTAATATAAAGTGGGAGCAAATATGCTGGAATATTCCTTTGTATACAAACACTTTGTATCTGTTTTCTTAATGAAGGGCCAAATCCTCTATGTTGGTAAGTTTCCTGTCATAGATTAAGCCTGGTCTTAGACTAAATGTCAGTGTTATTTAAAGCCTTTTTAGTCCTAGATTAGGATTACTTTATGTCTGAAACACTAGGGCTATATCCTATTTCTTTCTAAACATAATGGAAAATgtctataataaaatatacaaaacttcgttatgtaaataatattgaaCATTATATACTATGAAGATGTTTTGACATGTTTGTCTTTCTtaacatgtttataatttaaggTAAATgggtg

Function

symbol description
tlx3 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in animal organ development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including nervous system development; regulation of respiratory gaseous exchange by nervous system process; and respiratory gaseous exchange by respiratory system. Located in nucleoplasm.

NR:

description
PREDICTED: T-cell leukemia homeobox protein 3

GO: NA

KEGG:

id description
K15607 TLX3, HOX11L2; T-cell leukemia homeobox protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918811.2 True 3453 mRNA 0.40 3 11324357 11335757

Neighbor

gene id symbol gene type direction distance location
LOC113529553 fam196b coding upstream 96469 11198866 ~ 11227888 (+)
LOC117597888 NA coding upstream 489833 10832104 ~ 10834524 (+)
LOC117597887 LOC108274931,LOC108274937,LOC108274933,LOC108438829,LOC108438834,LOC108274936 coding upstream 496971 10825470 ~ 10827386 (+)
LOC117597912 LOC108274933,LOC108274937,LOC108274931 coding upstream 511235 10811938 ~ 10813122 (+)
LOC117597886 LOC108274931,LOC108274933,LOC108438829,LOC108438834,LOC108274936,LOC108274937 coding upstream 513162 10804439 ~ 10811195 (+)
pmt LOC108275150,LOC108438819,LOC107552346,LOC107662165,LOC107731361 coding downstream 58421 11394178 ~ 11413501 (+)
zgc:152774 zgc:152774,LOC108274965,LOC107731348 coding downstream 84560 11420317 ~ 11441411 (+)
cetn4 cetn1,LOC108438842,LOC103037928,LOC107596341 coding downstream 138664 11474421 ~ 11481777 (+)
il21 NA coding downstream 154654 11490411 ~ 11492927 (+)
arsia LOC108275202,LOC108443929,LOC103039297,LOC107678625,LOC107552342,LOC107731357 coding downstream 236333 11572090 ~ 11577055 (+)
G146513 NA non-coding upstream 30874 11221581 ~ 11293483 (+)
G146380 NA non-coding upstream 270932 11053167 ~ 11053425 (+)
G146377 NA non-coding upstream 272937 11051216 ~ 11051420 (+)
G146308 NA non-coding upstream 307003 11016095 ~ 11017354 (+)
G146322 diaph1,LOC107754500,LOC107660904,LOC107588363,LOC107747105 non-coding upstream 427973 10895741 ~ 10896384 (+)
G146576 NA non-coding downstream 81421 11417178 ~ 11417389 (+)
G146573 NA non-coding downstream 105773 11441530 ~ 11443247 (+)
G146645 il17b non-coding downstream 182565 11518322 ~ 11579432 (+)
G146687 NA non-coding downstream 335005 11670762 ~ 11674491 (+)
G146741 NA non-coding downstream 392269 11728026 ~ 11728681 (+)
hrh2a LOC108274475 other upstream 18039 11295128 ~ 11306318 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 728756 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 776428 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 2482091 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 3857805 7447870 ~ 7466552 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 259742 11595499 ~ 11597970 (+)
G147542 NA other downstream 1581162 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 2013566 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 2037115 13372872 ~ 13389196 (+)
ces2b LOC108275184 other downstream 2425577 13761334 ~ 13776871 (+)

Expression


Co-expression Network