irx5b (LOC108275041)


Basic Information

Item Value
gene id irx5b
gene name LOC108275041
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15281858 ~ 15285227 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918831.2
ggcagtccGCCAATTATCGCGATGGACGCAGGAAACTCAGCATGAGCTTTTCCTTCTTCCCTTCCAATTCCTGTCGCTGAAGAGCCTGTAGCCTCCGCCACAGGGAACAGCGGAATAAGTCTTTTCATTCCTCACCCTAGCGCTTTCCGACACATTTATACTGCCATCCGACAAGTTGCTCTAAATAAAgaaggcattttttttaaacagtcgGATAACGGAGACCAGAGCAAATGGAGATGATCTGAAGGAAACCCGATGGGCATTGACCAGACCTCTTCCCATCACTTCCACTGAATACACTATAGGTACTTGTGAATGTTCCACGTGCGCGGTACCAGTCTACACAGCGCGCGACTCCGTGCCAATGTGACCGAGTCCGGCAGTAACTCGTGGGAAGCAGTGCACACATTTCACTGGATCGTTTGGCTGGGATTTTCAGCATGGCATACCCTCAGGGCTACTTGTACCAGGCGTCCACCCCTCTGGCTCTCTACTCGTGTCCTTCGTACGGCTCGAGCGCGTTGGCGGCGCCGCGTGCGGATGAGCTGAGCAGAGGGAACTCCAGCTCCGGCTCTGCGTTTGCGCCGTACGCGGGATCTACAGCTTTCACCAGCCAAACTCCAGCCTTCAACTCGCTCCAGTACGGCTCAGAGCCCGCATCCGCACCACAGTTCTCCTCATTCGTGGGTTCCCCGTATGAGCCGTCCCCGGGTCTGGCCGCCTCTCTGGGTTACGCGCACCCGTACGGAGCGCCTCTGGGCGCGTTCCCGCTCGGAGACCCCGCGTACCGGAAGAACGCCACGCGGGACGCCACCGCAACGCTTAAGGCTTGGCTGAGCGAGCACAGGAAGAACCCGTACCCCACCAAGGGGGAAAAGATCATGCTGGCCATCATCACCAAGATGACCCTCACCCAAGTGTCCACCTGGTTCGCCAACGCGCGCAGGAGACTGAAGAAGGAGAACAAGATGACGTGGACCCCACGGAACAGAAGCGAGGACGAAGATGAAGAAGATAATATcgatttggaaaaaaatgatgatgaagatgagcCGGTTAAGGCAGCCGAAATGGCAGAGTCGACCAAAGAATTAGGCCTTCCCGTCAGTCCAGGACTAGTCACGACCGAGAAGCACACAGAACACACTGATGATGAAGCGGATCGTGTTATTGACACCTCCGCTCGGAGAGACGCTGAGCCGCGCGCTGGGTGCGACTCTTCATCACCCACGACCTCCTCTCTCCAAAGCGGTCCGGACAGAGTCGGGCCAGAGACGCCCGCAGATCAGGGAGACACTCTGAGCGCAGTGAAGCCCTCCGGAGAGAGCGGCCTTGGCACATCTGTCATTCATTCCACGAACCCGGCTCCCAAGCCCAAACTGTGGTCTCTGGCCGAGATCGCCACATCGGATAAGCCGGGTGGTGAGCGGCTCCAAACATGCGGAGCAGCTCAGAGTCCAGTCATCATCAGCACGGGCGCCTTCTCGCCCTCCAGGTCGCCCACACGGGGTGCTCTCCTCCCCAGGCACTTCTACTACGCTTCTGCTTTTTATCCCGCTTTCACGAACTACAGCGCGTTCGGGCCGGCGGGCCGCGCCTCCAGCTCCGGATTAAGCGACGCGGCGCTGCACAGAGCAGCCAGAGGAAACCCAGCGGCCGACATGTGCAAAGAGCTGGCACAGGGGGAGGCGCACTCCAAGCGTTAAACATCCCCCATCGCTTTTCCTCCCTTTATTTATCCTCTCTGGGATGAGAAACTGGATGATTTTCTTTAGATAAGAGTGATAACGAAGAGAAAATCTGGGGTTGTGACTGCACATCTTGTGTAAATGAAGCTTTTTGTATTCGAAAGGGAAttttatgaaatgtaatgtttGAAGTACTATAAAGTGAAATATTGCTTCTTTGCTAATCCATCCACGTGAAAGCAGAGCGGCGCAAGAGGCCAAAGttaattcactattttacaTTTCTATAGGTcactcctcttttgttttactGATTCTTGGATATCCAAGAGTTGAATGTCTGTACCATTCGTggaatttaacattttataggATAACATAAAATCCCCATCTTTCGATTTTTCCTCACATAACATCTCATTTAAGCAGACATACAGTTTCCGTTCTGGCAGATGTTATAGTTTCCTTTAAGGTAGGCTATTTTTGATCATTAATCCAGGCAATCGAGTAGAATGACCGTTTAATTAAGGTTTTATTCACAATTTTATCATTTGATTATATAAGAGAGATTTTGTGTGgccaataaaatatatattgtttgaTTTTA

Function

NR:

description
PREDICTED: iroquois-class homeodomain protein IRX-5-like

GO: NA

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918831.2 True 2298 mRNA 0.52 3 15281858 15285227

Neighbor

gene id symbol gene type direction distance location
LOC113530066 prkar2b,LOC108275286,LOC107676465,LOC107732287 coding downstream 64801 15200015 ~ 15217057 (-)
hbp1 hbp1,LOC107701066,LOC107754327 coding downstream 82188 15194318 ~ 15199670 (-)
gpr22b gpr22,LOC108428781,LOC107754326,LOC107561157,LOC107701065,LOC107676451 coding downstream 111151 15164565 ~ 15170707 (-)
golt1bb golt1bb,LOC108275057,LOC108428784,LOC107676462,LOC105895666 coding downstream 132576 15145412 ~ 15149282 (-)
pthlhb LOC108274596 coding downstream 164080 15116022 ~ 15117778 (-)
rpgrip1l rpgrip1l coding upstream 99861 15385088 ~ 15405178 (-)
hsd17b2 LOC108275401 coding upstream 163515 15448742 ~ 15452712 (-)
gpia gpia,LOC108274969,LOC108428767,LOC107679975 coding upstream 168953 15454180 ~ 15465781 (-)
lsm14aa lsm14aa,LOC108274970,LOC108428766 coding upstream 183495 15468722 ~ 15478312 (-)
cpne8 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC106561599,LOC105026415,LOC106573107 coding upstream 195811 15481038 ~ 15520462 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 143851 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 149361 15130776 ~ 15132497 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding downstream 153352 15127232 ~ 15128506 (-)
G148833 NA non-coding downstream 244396 15037225 ~ 15037462 (-)
G148612 pdhx non-coding downstream 599105 14681515 ~ 14682753 (-)
G148992 NA non-coding upstream 45980 15331207 ~ 15331432 (-)
G149057 NA non-coding upstream 91976 15377203 ~ 15377406 (-)
G149301 NA non-coding upstream 440024 15725251 ~ 15725901 (-)
G149305 fancf non-coding upstream 465932 15751159 ~ 15752470 (-)
G149312 NA non-coding upstream 473057 15758284 ~ 15758501 (-)
LOC113529695 NA other downstream 52873 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 193798 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 469153 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1446103 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1491313 13790287 ~ 13790545 (-)
LOC113529470 LOC108275326 other upstream 426766 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 695937 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 855892 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1768126 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2919424 18204651 ~ 18214487 (-)

Expression


Co-expression Network