LOC113529576 (LOC105891230)


Basic Information

Item Value
gene id LOC113529576
gene name LOC105891230
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 10780110 ~ 10782530 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918848.2
ATGCCGGACAGAGCAATGGCGCTGCAAGTACTGTTGTTTATTTGGATCCTTATTCTCAGTGCAGTGCACGGACAGGTCAGTTACTCCATTCCTGAGGAAATGCCGAAAGGCTCTTTAGTCGGTAACATTGCTCTGGACTTGGGTTTAGATGGACAAAGACTGAAATCAGGTAAAGCTCGTATTTATACCGGAGACAATGCTGAATACGTCGAGCTGAATAAAGAAAGAGGAGTGTTGCTTGTTAAAGAGCGGATAGACCGAGAGTCACTGTGCGGACAGACAACGCCTTGTGCTGTGCATTTTCAAATTACATTGGAAAATCCCATGGAGCTTTTTAGCGTCACAATTGAAATCACAGATATAAACGATAATGCTCCCAGCTTTAAAAACAGCGAGAAACGATTTGAAATAAGTGAGTCTGCGATTGTTGGGTCGAAATTTGTGCTAGAGAAAGCGATAGACTCAGACATTGGTACTAACGGCCTGCAGAGATACACTTTAACACCAACGAACAATTTTAATCTAAAACTTGAGAGTCAAACTGATGGAAGTAGAAAGGTTGAAATGGTTTTACAAAAACCTCTGGACCGGGAAAAGCAGGAAAATATATCCTTGCTGTTGACAGCCATAGATGGCGGTGAACCGCAGATGTCAGGAACATTTCATATCCATATTTCTGTCCTTGATGTGAATGACAATGCACCCGTTTTCACAAAACCAATGTATAAAGCCCTGTTGATAGAGAATTCTGCTAAAGGATCGTTAGTAACCAGGGTTAGTGCGTCAGATGAAGACAAAGGATTAAATGGACACGTTAATTATGTAATCTCTAATACTGACGCCGTATCGGAATTATTCCGAATAAATGAAAACGGAGAAGTAATTTTGATCGGTGAAGCTGACTATGAAATAGCAACGAGTTATCAGATTGATATTGAGGCCATAGATAATGGTGGATTGTCTGATTCAAGCAAAATACTTGTAGATGTGATTGATATCAACGACAACCCTccaattattaatataatatcgaGATCAGATTCAGTGAAAGAAAACTCTTCTCCAAATACTGCTGTAGCGATGATAAGCATCAACGATCGAGACGCGGGGAAAAATGGACAAGTGATATGCAGCATTACTGAAAATCTCCCCTATGTAATCAAATCCACCGGTTCAGGGTTTTACAGTATTCTTACCGAGAGTGATTTAGACCGGGAGAGAGAGTCTGAGTATAATATCACTGTAATGTGCGCTGATGAAGGATCTCCTTCGCTCTCCAGTAGCGTCACTCTCTCTTTACAGATATCAGATGTGAATGATAACGCACCTGTCTTTGAGAGGAGTTTTTATGAGGCttctattacagaaaataactCACCAAGTCTGTCCATATTCACAGTCAAAGCCATAGACGCAGACTCAAAACAGAATGCCCGTGTTTCTTACATACTGGAGGAGTCTTCGGTTAACGGAGTGCCTGTTTCCTCTTACGTGTCCATCAGTGCTGATAGTGGCGTTATCCATGCAGTGCGCTCTTTTGATTACgagcaaattaaacatttcagtttCCGTGTAAAAGCGCAGGATGGAGGCAACCCGCCTCTCAGTAGCAACGTGAGTGTGAAAATCAGTATTCAGGACCAGAATGACAACGCGCCTCAGATCCTGTATCCAGTACaaactggtggctctgtggTGGCTGAAATGGTGCCTCGTTCAGCAGAAGTGGGCTATCTTGTGACTAAAGTGGTGGCTGTGGATGTGGACTCTGGCCAGAATGCCTGGCTCTCATATAAACTGCACAAAGCGACAGACAGGGCGCTGTTTGAAGTGGGCTTACAGAATGGAGAAATAAGAACTGTGCGCCAAGTCGCTTATAAAGATGCTGTGAAACAGAAGCTCACTGTTGTAGTGGAGGACAACGGACAGCCCTCTCGTTCAGCTACAGTCAATGTTAACGTGGCGGTGGCGGACACTTTCCCTGAAGTGCTCTCCGAGTTCACTGACTTCACGCACGACAAGGAGTACAACGACAACCTGACATTTTATCTCGTCCTGGCATTGGCTGtagtttcttttctcttcatcGTGTCCATCATAGCTATACTGTCAGTCAAATGCTACAGATGGAAACGTGagagactgttttacaaatccGGTGCCAATCTGCCAGTGATTCCGTATTATCCACCCCTTTACGCAGACGTAGGAGGAACAGGAACTTTACAGCATATGTACAATTATGAAGCTTACAGAACCACTGACTCTAGAAAGAGTGATGTGAAATACGCCAGACCTCCTACTGAGAGCAACATTAGTCTGGACAGCAGTGGAACAAAGACTCTTACGCATGCGCTTATGGGGAAATCTACTGCTGTCTCTGATGATCAGGTGAGGTCTAGGACTTTATTGCTTTGTTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC105891230

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918848.2 True 2421 mRNA 0.43 1 10780110 10782530

Neighbor

gene id symbol gene type direction distance location
LOC113529863 pcdh2ac,LOC108275110,LOC108430948,LOC107660888,LOC107588302,LOC107754492,LOC107655665 coding upstream 31465 10710206 ~ 10748645 (+)
LOC117598101 LOC108275110,LOC108275116 coding upstream 70576 10706985 ~ 10709534 (+)
LOC117598044 LOC108275110,LOC108275116,LOC108275111,LOC106611847 coding upstream 74649 10700557 ~ 10705461 (+)
LOC117598100 LOC108275110 coding upstream 86026 10691379 ~ 10694084 (+)
LOC113529654 LOC108275110 coding upstream 100195 10677199 ~ 10679915 (+)
LOC117597911 LOC108274931,LOC108274936,LOC108438834,LOC108274937 coding downstream 662 10783192 ~ 10786436 (+)
LOC117597913 LOC108274937,LOC108274933,LOC108274931,LOC108438833 coding downstream 21129 10803659 ~ 10804439 (+)
LOC117597886 LOC108274931,LOC108274933,LOC108438829,LOC108438834,LOC108274936,LOC108274937 coding downstream 21909 10804439 ~ 10811195 (+)
LOC117597912 LOC108274933,LOC108274937,LOC108274931 coding downstream 29408 10811938 ~ 10813122 (+)
LOC117597887 LOC108274931,LOC108274937,LOC108274933,LOC108438829,LOC108438834,LOC108274936 coding downstream 42940 10825470 ~ 10827386 (+)
LOC113529600 NA non-coding upstream 21303 10755909 ~ 10758807 (+)
G146168 NA non-coding upstream 253252 10526543 ~ 10526858 (+)
G146141 NA non-coding upstream 329087 10450676 ~ 10451023 (+)
G145966 NA non-coding upstream 568615 10208004 ~ 10211495 (+)
LOC113530164 NA non-coding upstream 589917 10170715 ~ 10190193 (+)
G146322 diaph1,LOC107754500,LOC107660904,LOC107588363,LOC107747105 non-coding downstream 113211 10895741 ~ 10896384 (+)
G146308 NA non-coding downstream 233565 11016095 ~ 11017354 (+)
G146377 NA non-coding downstream 268686 11051216 ~ 11051420 (+)
G146380 NA non-coding downstream 270637 11053167 ~ 11053425 (+)
G146513 NA non-coding downstream 439051 11221581 ~ 11293483 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 184509 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 232181 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 1937844 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 3313558 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 3823594 6956445 ~ 6956516 (+)
hrh2a LOC108274475 other downstream 512598 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 812969 11595499 ~ 11597970 (+)
G147542 NA other downstream 2134389 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 2566793 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 2590342 13372872 ~ 13389196 (+)

Expression


Co-expression Network