hsd17b2 (LOC108275401)


Basic Information

Item Value
gene id hsd17b2
gene name LOC108275401
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15448742 ~ 15452712 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918870.2
GGTTAAAGAAAGAGAAGGCTGCCTGTGACTCATTGCACCTTATTTACGTCTCAAAGCAGTTTCTCTTCCTTGGCCAGGTGTGCTGGTGAGAATGGAGGCAAGTGGAATGGAGCTCGGGCTGTGTGTGCTGATCATAGCTACCAGTGCTGCACTGCTGATGGTGGGATGGAGTAGAAGTTGCTTGTCATGGTCAGTGGGGCTTGTGGTGGTGGAGCTGATGCTGTGCTATTGGATATCAAATGGAAGTGTGGCAGTGATACTGCTGAGTGTCAGCTGTGGCTGCTGTATGATCCACTTTACTGCAGGAAGAAAAGAGGACATGCTGCCTGTGCAAGGCAAAGCAGTGCTCATTACAGgtTGTGACTCCGGTTTTGGCCACAATCTTGCTAAAATCCTTGACAAAGCTGGGATGAAGGTGTATGCCGGAGTGCTGGAGGAGTTCGGACCTGGTGCTCAGGAGCTCAGGGAAGTTTCCTCTCCACAGCTTACCATCCTACAGATGGATGTCACAAACATCAGCCAAATCTCTGAAGCTCATAAGCTTATCAAGAGTCAAATAGGAGAGACAGGTCTTTGGGGACTGGTGAACAATGCGGGAGTGCTTGGACATATGTGTGATGGGGAACTTCTTCCCATGAGAATATTAAGAAAAATCCTGAATGTGAATTTTATTGCTGGTGCAGAGGTGACCAAAGTTTTCCTCCCTTTGATAAGACAAGCACAAGGAAGgattgtgtgtgtatccagTATGTCTGGAGAAGTGCCGTTCCCTGGTTTCGCTGCATACGGAGCATCTAAGGCAGCTGTGATTTCTTACTATGGAGCTCTGAGACAGGAACTGTCCTGCTGGGGTGTAAAAGTGGCCATTGTTCAACCAGGGGGCTTCAAGACGAACATTTTAGGCAATCAAGAGGAATGGAGTAAACTCCAAAAGGAAATCCTCAGCACCCAGCCCCTAGAAGTAATAGATGCATATGGAGAAGAGTACATCTGCTCTATGCAGCACCGTTTAAGTAAAATGACTACTCAAGCCTGTCCTGATTTCAGGCCAGTTCTGGATGATATACAACATGCATTACTCTCAGAAAAGCCAAGGCCCTTTTACCACCCGGGACGCACCGCCTGGGCCATTCCGTTGCTACAAAGGATCTGTCCAACGTGGATGTTTGATGCCATTTTTGCACAGCTATTTACTTATGACAAGTTCTGTCCAGCAGGTGTGGCTTCCAAAAGATGAAACACTTTGTGAGAATATGCACTATGGTCTAACAGTATGCCTATACCAGCATGCGTTTCTGCAGTGTCCAAATATGTTAATAATCTACTTAATGTGCATTTTCAGAATGAGGGCAGACTCTGCAGGAAATCCGATGGCTAGAATCTTAAAGacaaatgaattaatacatTCTTCTGTCACACTCTGTAACCATTCTGAAAATGCATGATAGGGAAAGCTGCCTTCCCCCCCCCCTGCAGTCACAGTCTCAGTCACCAGCCACTGGGGGAAAAAGGGTTAATCCACAGGAAGACACTCATTATTTACTTGCCTGGTAGACACTATATAGAGATGTGTATTTTGGGTACAGCTCAAAAATACTTGTTCATAACTTTATAAAGCCTGCTGTGGTTggatgtgtttaaatgtgagcCACTGGAGCACTGAAAAGAAGTTAAATGTTACTTTAATTCTCCTTTTAAACCCAACATGCAAGGGCATGCAATGCAGCGCTAATGTAGCACTCTAATTTCTATCAGCATCCTCAGGTTTTTGCTTAATATTCTCAGGCTTTCATTCCatactttcagtttttttttttttttttttttagtaatggcTCCACATTATATATGTAGATAGAACCACAGAGCTCTTGCCTTGTGAAAGGCTTCAATACATATCTTTaagacattcttttttttttttttttttttagtgtctAAGTCCAGTTATCGTGTTATATTTATGGGTCAATAACTGCatcatgaaaatggaaaaaaaaaaaaaatgtgtattaagAAGTTTTTGTTAGTGCCTAAAGACAAGAGATTATTACACTGTGTATTGAGTTTTACTTTAGCAACAGAAAATCCATGCATACTCCAGTACATTTTTTGGAATTACTTTACTTTTCTCAGGTCTGGAAATACCAGGCCTTTAAATTCCACAGGCATTCCAGCTCTTCAGCACAAGAACCTTAAATGATACTTTTTCATGGGTGgccaaaaatgtaataaaataaataaaaacccaacACACATTACAATGATCATAAACTTAgcccattaaaaaaataaggatGTACAACATCCATTTTACAGCACCCTTTTTTCACTGAATGATTGTaaagcattaaaacattaaagagTCCAAAGTGTTTGCatgtatcttt

Function

NR:

description
estradiol 17-beta-dehydrogenase 2 isoform X3

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function
GO:0047035 testosterone dehydrogenase (NAD+) activity molecular_function

KEGG:

id description
K13368 HSD17B2; 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918870.2 True 2390 mRNA 0.42 5 15448742 15452712

Neighbor

gene id symbol gene type direction distance location
rpgrip1l rpgrip1l coding downstream 43564 15385088 ~ 15405178 (-)
irx5b LOC108275041 coding downstream 163515 15281858 ~ 15285227 (-)
LOC113530066 prkar2b,LOC108275286,LOC107676465,LOC107732287 coding downstream 231685 15200015 ~ 15217057 (-)
hbp1 hbp1,LOC107701066,LOC107754327 coding downstream 249072 15194318 ~ 15199670 (-)
gpr22b gpr22,LOC108428781,LOC107754326,LOC107561157,LOC107701065,LOC107676451 coding downstream 278035 15164565 ~ 15170707 (-)
gpia gpia,LOC108274969,LOC108428767,LOC107679975 coding upstream 1468 15454180 ~ 15465781 (-)
lsm14aa lsm14aa,LOC108274970,LOC108428766 coding upstream 16010 15468722 ~ 15478312 (-)
cpne8 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC106561599,LOC105026415,LOC106573107 coding upstream 28326 15481038 ~ 15520462 (-)
kif21a kif21a,LOC102199929 coding upstream 69975 15522687 ~ 15566408 (-)
slc2a13b slc2a13 coding upstream 115117 15567829 ~ 15577214 (-)
G149057 NA non-coding downstream 71336 15377203 ~ 15377406 (-)
G148992 NA non-coding downstream 117310 15331207 ~ 15331432 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 310735 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 316245 15130776 ~ 15132497 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding downstream 320236 15127232 ~ 15128506 (-)
G149301 NA non-coding upstream 272539 15725251 ~ 15725901 (-)
G149305 fancf non-coding upstream 298447 15751159 ~ 15752470 (-)
G149312 NA non-coding upstream 305572 15758284 ~ 15758501 (-)
G149363 cyp11a non-coding upstream 445178 15897890 ~ 15898161 (-)
G149364 NA non-coding upstream 449728 15902440 ~ 15902642 (-)
LOC113529695 NA other downstream 219757 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 360682 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 636037 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1612987 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1658197 13790287 ~ 13790545 (-)
LOC113529470 LOC108275326 other upstream 259281 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 528452 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 688407 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1600641 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2751939 18204651 ~ 18214487 (-)

Expression


Co-expression Network