tafa5b (fam19a5b,LOC108428378,LOC108274593,LOC103024527,LOC107696241,LOC107716636,LOC107753604,LOC107598818)


Basic Information

Item Value
gene id tafa5b
gene name fam19a5b,LOC108428378,LOC108274593,LOC103024527,LOC107696241,LOC107716636,LOC107753604,LOC107598818
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18534945 ~ 18552473 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918875.2
cacacagcacggACATGCAGCTCGTGCGGGCGGTTTGCGCGCTCGCGGCCGCGGCTTCGGCCCTTCTCCTTATTCTCCTCTTTCAAGCGCGCTCTCTGCGAGAAGGTCAGCTGGCGGCAGGCACATGTGAAATAGTCACACTAGACCGAGACAGCAGTCAGCCAAGGAGGACCATCGCACGGCAGACAGCCAGGTGTGCCTGCAGGAAAGGCCAGATTGCCGGCACAACCAGAGCCAGCCCGGCGTGTGTAGACGctCATATCGTGAGGAGCAGACAGTGGTGTGAGATGATGCCTTGCTTGGATGATGAAGGCTGTGACTTGTTAGTAAACAGATCAGGTTGGAGATGTGCACAGCCTGGAGGCAAAGTGAAAACTACTACAGTATCCTGACATCAGCTGTAGTTGAGGCTTCTGAGAGAAGGTGCTGGGTGCAGACACTCCACTCCATCCTCTATGGCTACAACTACCatcaacattttctagtctgttTATCCACCCATCAGTAAGGGGAATGAAGACCTGCTCCTGGTACTTGTGTAGATGATCAGATTGAACCCACAACAGAATGGATAATGGATCATTCTCAGAAATTTATAGATGCATACTGCTGGACTGAACAAGattgtggatttgttttggagCTGACAGAACATTTTCTCTCCAGTGATGATAAATTTTTTACAGACCAAAGAAAAACTGAATGGACACCAAGCTTCTATTTGGAAGGATTTTGGTGATGTGAGTTACTAGGGACAAATATAAATGCacaattagacaaaaaaaaaaaaaaaacctgaatacaCATACACCTGGTGGCACAGAGAGAAAtaaggacattttaaaaaagtcttgaATTCTCAGTGCATCGTTCTTGGATTTATCAGTTGGTCCTTATGCTGCATAATGAACATAAATCAGGTATTTTGGAACGCGCAACAACCATGCTGATGACATGTGAAAAGGAACTTTGGTGGaagataataaatatattttcaaaggCACAGAATGTATTCAATATTTCTTATGTTGTaattaaattgcttatttaatAATGTGGTCATGTGTGCAACCATAAAAAAATGGATTCATAATCAGCCATGCCCTTACCTTTCTGAAATGATCTCCTCAGAGCTCAACTTCCTCTGAAAGCATATTGAAAACCTATTTTTTCAGCACTGTATAAAGTAAAGATAAATCTCTCATTAGATGCCCTTTGTCATGAAATTGTTTATGTTTCAGCCCAAAGCATATGATAGCTATCATCACACTAAGGTAATTGCTCTAAAAAGCTTCATGTTCGTATATTTGGTATATGGTGTGCCTCTGTGAGTTTTGCGTCAGGTTCTGCTTTTGCCCTTGTCCTTCACTTTCCCCGAGTTCAGAGTCTGTGGAGATATGCTGCTGTCATCCAGGCTTCAAGCTTCATTTAACATCACTAACAGTCTGCATACATTACACAGCTCTTCTTATTACTGACACATTGCTGCTGTGGCCATGTTGAAGTGTTCCCTCACTGAAAGTGATCATATGTCAGTGGTGAGGGGTTGTATGCTTTATAGGGTTCACTGAATAAATTTCCCAGAACACTGGAGTATTGGAGGAGAACTAGCACCTGTTTTTCAATCAAACATCTTAAGTAACCTCTATAAATTACTAATGTATCAGTAGGTATCATCATTATTAGGCTCTTCAAAACCAACTAATATATGTTGACTTATAATATTATCAGTTCAGCTAATACTAATTTTGATGACGTTACGTAATCATTAAGCTATTATTAAACTATGAGTTAAGAGGCCTACAGAGAAAAATGAGCTCTTTCCAAAGACAAAAGATCTCATACATTTATGATCCTAACCTGACATGACATACTGAACCCTCACAAATTTCAATACACATGTCAAAAGCCTTACTCATTCATCCacaaagtaaatgaaaaaaaaaaatacagacttgGCCAGTTCCTGTTAAAACCTCATTTACATTCTGTCAGCTTCTATTAAGGATGAAGATTGGGACAATGAGTAAGAATATGCATGGAGAAGAACTCCAGCTGAAGTCTGTTATGGTAATCTTGTCACTTCTTACCACTCTGGCAGATGATTTCGCCTCAATTTGAACTTCCTCCTGAGACATAAACCAATAATCATCTAGTCTGAAAACTTGCTTTAACTTTATTATGTGATTACTTGTCACCAGTATCAGGCATGGATTAGTGGCACTTAATGCTGTGCTACAAATAGGAGTTTTGGCATAAATAGAAAATCTTCTGTAAAGCTAAGGAAGAGGCATGTATGTAGCTAATCATACATCTTTTGCTAGCATAGAGTCAGTCATTAGAAATTTTCTCTAATTTTGTACAAGATAGTTCTAGTATATTTGAGGTAATTCAGAcctttaaaaaagtatttaaaaattgttttaatttttaaactattattatttgtattatggTACAAGTTAGGtagaaaacacatttactgGTACATGTCCATTATTCTTGTCCTCCTTATACTAAATTCTATTGATAAGGAAATGCCATCTGCAAATCAAATGGAAACAATTAGAACAGGCAGAGATGCACATTGTTAACAGGATCCAATAGCTCTGTTAGTGAACGTCATAACAAATGGCCAGGTCTCAGCTGTGCTTTTGAATAAACTCGATTTTTCAGAATTGAAGGGAGAGATTAAAAGTGATGTATGTATAATTGTGAAAAATCTAAACCTGGATGCTTTTTATAGTGCAAATTTGAGTTTAAGGGGAAACCAGAAGAGAACTCTGCAATTATAGATAATTACGTAGCAATTATAAATTTGCATGATAAAACCACTGCTTACATAATGACCTGACCAACAACTTTGCACCTGGAATCAGCACAAGTAGAGGATGGCAGTCTGCCTCAGAGCAGGCTACATTTTCAAAgatgtacacacacttttaccttATGTGTTGTATTAATTTCCCTCTCAATAGAGCTGCTACCAAGCACATCTAGAATTGTCCTTCAAGCAGATGTATTATTCAGCAATTAATTATCTGTAGGCAATGCTGTAATTCCCCTGCTAATTTGGACAAACATTCAGACCTGGTCCATTTGAATCACAAACTTGTTGATATCactgggcagtggtggctcaacagttaaggctctgggttactgatcagaagatcGGGTTCAAgacccagcactgccaagctgccactctTGGGCCCTTCAGCAAGGCCcgtaactctctctctctgctccaggggtgctgtatcatggctgaccctgcactctgaccctaacaa

Function

NR:

description
PREDICTED: protein FAM19A5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918875.2 True 3296 mRNA 0.39 4 18534945 18552473

Neighbor

gene id symbol gene type direction distance location
ube2q2 ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444 coding downstream 76962 18448142 ~ 18457983 (-)
nptna LOC108274497,LOC108436943 coding downstream 114574 18404512 ~ 18420371 (-)
hcn4l hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391 coding downstream 136687 18378729 ~ 18398258 (-)
LOC113530128 LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663 coding downstream 187298 18340453 ~ 18347647 (-)
arid3b LOC108275332,LOC108436938,LOC107575848,LOC107752332 coding downstream 196522 18318624 ~ 18338423 (-)
zcrb1 zcrb1 coding upstream 106062 18658535 ~ 18659614 (-)
LOC113529455 LOC108274993 coding upstream 155588 18708061 ~ 18713197 (-)
LOC117597890 NA coding upstream 173826 18726299 ~ 18729600 (-)
dbndd1 dbndd1,LOC108275320,LOC108428370,LOC107570651,LOC107723994,LOC107742629 coding upstream 218774 18771247 ~ 18774738 (-)
mafb LOC108274756,LOC108428434,LOC101173775,LOC106513190,LOC107084340,LOC100702616 coding upstream 402754 18955227 ~ 19025035 (-)
G151009 NA non-coding downstream 26969 18507776 ~ 18507976 (-)
G150996 NA non-coding downstream 89757 18444891 ~ 18445188 (-)
G150989 NA non-coding downstream 111620 18422657 ~ 18423325 (-)
G150988 NA non-coding downstream 112301 18421493 ~ 18422644 (-)
G150925 LOC108275437,LOC108436941,LOC107661438,LOC107696282,LOC107573699 non-coding downstream 158104 18373113 ~ 18376841 (-)
G151026 NA non-coding upstream 33908 18586381 ~ 18587613 (-)
LOC117598005 NA non-coding upstream 82620 18635093 ~ 18637152 (-)
G151052 ticrr non-coding upstream 113119 18665592 ~ 18666007 (-)
G151171 NA non-coding upstream 151877 18704350 ~ 18782412 (-)
G151181 ciapin1 non-coding upstream 202271 18754744 ~ 18757515 (-)
G150991 LOC108436944 other downstream 105972 18425319 ~ 18428973 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other downstream 170909 18353974 ~ 18364036 (-)
etfbkmt etfbkmt other downstream 229616 18303142 ~ 18305329 (-)
LOC113530223 NA other downstream 230144 18304638 ~ 18304801 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 320458 18204651 ~ 18214487 (-)
gatd1 pddc1,LOC102788149 other upstream 739736 19292209 ~ 19295843 (-)
zgc:114188 rps17,rs17,LOC107389132,LOC103042467,LOC108428414 other upstream 827183 19379656 ~ 19392962 (-)
LOC113530226 NA other upstream 834768 19387241 ~ 19387366 (-)
LOC113530227 NA other upstream 835296 19387769 ~ 19387895 (-)
LOC113530225 NA other upstream 839283 19391756 ~ 19391882 (-)

Expression


Co-expression Network