fbxl22 (fbxl22)


Basic Information

Item Value
gene id fbxl22
gene name fbxl22
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16061088 ~ 16066983 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918890.2
caaaaagcTCTCTAGTTGTTCCTTTGAGTGTTTTGTTTCCACCATTGATATTCCCTGAACACTTTCCTATCTGATGTACTTCATGTGCAGTGCTCaggaaataaatgcaaaattggGTCACAATGTTCAGGTTTGGCCACTAGCACATGTtctttttgtgatgtttttgaaGATGGATGTGTAGATCAACATATATCAGGAAGTGAAACCAAGCTTGGTATCGAACTCTGGGAATCTTTCAAACCAAATTCTCACTTCCACCCACAGcctgagtgagtgaatgtgaaaGTCCTGCCTTGATTTTCCCTTCAGCTGTGAATGATAAACACAAGCCACTGCTGTCCAAACATCTGCCCCAACAGATGGACtagtactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatactttacacatttccatttttgacTTAGCCTGCTGTTGTCCtctcaaaataacttccattcTTCACGACCTTATATGTGCACGGCTACTGTGTGAAGAAGAGCCTGCCTGCAAAGGAATCATGTATCCAGGCCTTGCAGAGCAGACTGCATCCCCAGCAACTGCTGTTCCTCTGTGTGTATCAACAGACTAGATCTCAGCCCAGCATACAAAGGCCTGTTTGATGCTTTCACTCTCTTTGCAATGCATCTCACAAATCTTAATCAGGAGTGCCTGCTtcatcttttttcattcttgGATAAAGACAGTCGGCAGAACCTGTCTCTGACCTGCAAGCGTCTCCGTGTAGTCTTCCTGGACCCTCAGCTCTGGTCTCTGCTCAACTTTTTCTCTCCTAGCGAACTTACGAGGAACAACTTCATCCTTGGCCCCTTTTTGAGGTACCTAAATATATACTGGCATTCCAGCAGGGTCAAAGTGTGTAATATTGAAGACTATAAGAAGACGATGTTCCAGAGGGACCTTTGCAGCAAGCATGCGAGCTTGGTCAGCCATTTCCTGGAGCGTGTCTGCCACATGTGTCCAAACTTGCTGTCCCTAACCCTTTCCGGTTGTGGACACATCACAGATGGAGACGTGATCAACGTGCTGTGCAGCTGCAGGCGACTGCAGCGACTGTGTCTAGAGAACTGCTGCCGTGTGACGGACGCTGTGCTGCAGGCAGTAGTAACCCACGGAGGCAGACTGCAGGAAGTGAGGTTGGATTTCTGCAggaatgtaacacacacaggcctGCAGACTTTCAGAGAGAAGAGGCCTGCAGTTCGGCTAGTTGCTGAGCGGAGTGCAGGGATGATACCTGACACTCCGCCTGGGGAAAAACTGCACAGCAGGAGGGCACTGCAGAAAGTCCTTATCTTTTCCTGAGAACCAAGGATGGGGATGGGAAGACGAGGTGTCTTCTGAGACCTGACAAATCATAGCAAAgtgatctatttatttattattattattattattattattattattattattgttattattattattttgaggtTGAAAAGGGGGCATTGTGTTCaaattacttattatttttcatttttgtttttatttgaatttttattacTGAGGTATCCAAGTCATTCAAAAATGGTGTGAATTTTCTacaatttttttctacaaatctgtatttaatataattcaattaaaacttttttttaaacaaaagtgtctTATTTTTTCACTTGAAGCATGCAGTGAAGAGTCGACTCCTTTAAATAGGCCTAATATAATCCACAATGTTGAGAAT

Function

symbol description
fbxl22 Acts upstream of or within SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and regulation of cardiac muscle cell contraction. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL22 (F-box and leucine rich repeat protein 22).

NR:

description
F-box and leucine-rich protein 22

GO: NA

KEGG:

id description
K10288 FBXL22; F-box and leucine-rich repeat protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918890.2 True 1722 mRNA 0.43 2 16061088 16066983

Neighbor

gene id symbol gene type direction distance location
usp3 usp3,LOC107659494 coding upstream 920 16049084 ~ 16060168 (+)
si:dkeyp-73b11.8 NA coding upstream 12934 16045575 ~ 16048154 (+)
trnav-aac_18 NA coding upstream 19841 16041175 ~ 16041247 (+)
neil1 neil1 coding upstream 46933 16009837 ~ 16014155 (+)
commd4 commd4,LOC107576274,LOC107757759,LOC107598913 coding upstream 52265 16005670 ~ 16008823 (+)
LOC113529940 LOC108275177 coding downstream 26089 16093072 ~ 16106147 (+)
si:ch211-112g6.4 sh2d7 coding downstream 103261 16170244 ~ 16174834 (+)
lrrc61 lrrc61,LOC107752319,LOC107598843 coding downstream 135792 16202775 ~ 16206450 (+)
idh3a idh3a,LOC107757767,LOC107659502 coding downstream 142795 16209778 ~ 16219634 (+)
dnaja dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738 coding downstream 164352 16231335 ~ 16235381 (+)
G149428 NA non-coding upstream 33069 16027607 ~ 16028019 (+)
G149427 NA non-coding upstream 34576 16024844 ~ 16026512 (+)
G149276 NA non-coding upstream 242720 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 306176 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 349171 15711013 ~ 15711917 (+)
G149552 NA non-coding downstream 187701 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 261273 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 271607 16338590 ~ 16341963 (+)
G149722 NA non-coding downstream 372723 16439706 ~ 16440054 (+)
G149723 NA non-coding downstream 379056 16446039 ~ 16449140 (+)
LOC113529564 ano9,LOC108442698 other upstream 238497 15807990 ~ 15822591 (+)
svip svip other upstream 335997 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 408404 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2231757 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2284217 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1767254 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2115571 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2608027 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2654612 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2680844 18747827 ~ 18796259 (+)

Expression


Co-expression Network