roraa (rora,roraa,LOC108433630,LOC106561150,LOC107703215,LOC106573506)


Basic Information

Item Value
gene id roraa
gene name rora,roraa,LOC108433630,LOC106561150,LOC107703215,LOC106573506
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16567295 ~ 16800368 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918892.2
TCGGCTGTAAATTTACCCAGCCAGACGAAGCGTCTCAGCTCGAAATCTCATCGCGACGGCTCGTGATATCGCAAGCGgcaaaaatttctttttttagattGAAAAAGCATTCTGAAATACAACATGGAGTCGCCTCCTGATCCGACGAGCGAGCCGGGTAAGAGCGCCTCCGAGGCGGCGAGCGCGGTCAGGGAGAGCCCGCTGAACCTGGACGCTCTGCGGAAAGCCGAGCACCAAGCGCCGGTGCGCAGACACAGCTGCTCCAGCACCAACAGAGGTATTTCAGTAACAAAGAAGACACATACTTCTCAAATTGAAATTATTCCCTGCAAGATCTGTGGAGACAAATCATCAGGCATCCATTACGGTGTGATAACATGTGAGGGCTGTAAGGGTTTCTTCAGGAGGAGTCAGCAGAGCAATGCGGCATATTCGTGCCCACGTCAAAAGAACTGCCTGATCGACCGTACCAGCCGAAACCGCTGCCAGCACTGCAGGCTGCAGAAGTGTCTGGCTGTGGGCATGTCACGGGACGCGGTGAAGTTCGGGCGCATGTCAAAGAAGCAGCGGGACAGCCTGTACGCTGAAGTGCAGAAGCACCGtctccagcagcagcagagggagcagcagcagcagccaggCGAGGCTGAGCCACTCACGCCCACCTACGGGCTCTCAGCAAACGGCCTCACTGAGCTGCACGATGAGCTGAGCGGTTACATGGACGGCCACACGGCCGATGGCACCAAGCCTGACTCAGGCGTCAGCAGCTTCTACCTGGACATCCAGCCCTCACCCGACCAGTCCGGTCTGGACATCAACGGCATCAAGCCCGAGCCCATCTGCGACTTCACGCCAGCCTCAGGCTTCTTCCCATACTGCTCCTTCAGCAACGGCGAGACCTCCCCCACCGTCTCCATGGCCGAGCTAGAGCATCTGGCCCAGAATATCTCCAAGTCCCACATGGAGACATGTCAGTATCTGAGAGAGGAGCTGCAGCAGATGACCTGGCAGGCCTTCCTgcaggaggagatggagagctACCAGAACAAGCCCAGAGAAGTCATGTGGCAGTTGTGTGCCATAAAAATCACAGAGGCCATCCAGTACGTGGTGGAGTTCGCCAAGCGTATTGATGGTTTCATGGAGCTCTGTCAGAATGATCAGATTGTGCTGCTCAAAGCAgGCTCTTTGGAGGTGGTGTTTGTCAGAATGTGTCGTGCCTTTGACCCTCAAAACAACACAGTCTATTTCGATGGAAAGTATGCTGGCCCTGATGTGTTTAAGTCATTAGGTTGTGACGACTTGATCAGCTCCATCTTTGAGTTTGGGAAAAACTTGTGTTCTATGCACCTGTCTGAGGACGAACTCGCCCTATTCTCAGCATTTGTGTTGATGTCTGCAGACCGCTCCTGGCTCCAGGAGAAAGTGAAGGTGGAGAAGCTACAGCAGAAGATCCAGCTGGCCCTTCAGCATGTCCTGCAGAAGAACCACAGAGAGGATGGCATACTAACAAAGttaATATGCAAAGTGTCAACCCTGCGAGCGCTGTGCAGCAGGCATACAGAGAAGCTGACCGCTTTCAAAGCAATATACCCGGACATTGTGCGTACCCACTTCCCGCCCTTATACAAGGAGCTCTTTGGATCAGACTTTGAGCAGTCCATGCCTGTGGACGGGTAGCAGCCCCTTCGTCCGCCCCGCTCTGAGGGGCCACAAACGCCGTGGGGAATGTCGAGCATGAATCTGAGACACTTTACCAGTGccctgcacatacacacatacacaaacacatacacaaacacaaaacaggacAGCTAACCTGCtgcacacactttctttttttttgtggttgttgttgttgttttccttcgGGAGGGGGGTACAGCAAGATGACTTTTATTTGGAGGGTTGATTTTGTGAGGTTTATCCCCTCCTTTTTTGACACAAGTGGGATTGGGAAGGCCCAGGGGAAAGGATGAGGAGATGAAGatgcttgttttctctctctctctctctctctctctttctctctctctctctctctctctctcttttcctggcTCAACCTGAAGCACTCATGCATACGATTCCAGAATGGTCCCTCGATAATTTCTAAATGATCACCAGAAATGGTGTTTCCGTCCTATTGTATCAAACCTTTAAATTCTTCAAAGAACGCAGCCATTAATTTGgatctaatttttttaaacaatgattataattataagaAATCAGTGAGTCATTACTTATTACACCCTCCGTGTAATAGTAGGCATGTGCTAGGTTAGGCCCCTCTCtactctttctgtcttttgctGGGAAGCTGCTGCTCAGAATGTAAACCAGCAATAAAAGAGGTCAAAAGAGGAGAGCCAGATGAGGAGAGAGACGgtgaaagggagagagaaggcgagaaagagaaagcatggGGCACGTGGAACGGAGCCGTCTGCATGGGGTGACACGAAACTGACGCCTTTCTAAGGACAAtcgttaaaaaaaagagaagaaagaagaaaaaataagtaGAATTCTGGTAAttctagtttttaaaaaaaatgcaattactTTTAGCTGTCGAGCACTTCATCCACCGTGGTTGCTTAGTGAGATCATATAAGGCCATCTGCTATTAAATCCTTTTTCTGGACAGATTATGGCAGTTTAACTGAGCACACCGCCACAACGCAAGGGTCCATTCCACCTGTTTTCTAATGTGCTACAGGGTATACGGTCATAAGTACTTActatacagaaaagaaaagtaatgtttatagaatctattttaaataacatgtaTAATATTAGTAGCTAGACTATTCTTAATTGTCAAAATTGATAAGGCACTTTTATTTGCACCTTTCTTTAATTTAAGACTTGTATATTTACCTAGTGATGTGTTGCATGTGCAAACAGAAATACAAGCGAAAAACCACCGACTCACAGAGGCTACATGTTGGAAGCTcctacagatgtgtgtgtgtgtgtgtgagcgagcaAGTGTGTAAGGATAAGATCAATGCTGGGTAAAGGCTGACAGAGAGGTGTATAGAGTTGCATCGGGGTTTTCGGCTCAGATCAGTTTTAGCGCTTTACAGAATGAGAAGTGTGTGCAAGGCTGAAcctgatcccagatcagcatGTTCTACAACACTGCCAATCCACGTCTCACCTTGTCTAAAACCGGTGTAACCGTATGACTTGTTAGCAAGCTTGATTTTCTCTTAGGTGTAATGCCCATTTTCAGCACAAACGTAAAGCACAATAGTTAAATCATTGCCATTAAAGTGTGTGGAAAGCAGGCGCTGGGGTTTAGAGTAATAAATTTTCATTGTGCAGTGCATGTTAGGAGCTAGTCAATGGTTCCATCTAGTGGTGAAGATCCCACAGCATCTCTCAGTATTTCACATATGGCTTgagcattcatttattaatgatacAGCGTGCAGACTTCCCTGGTTAATTCTGCCCCATCTGCTTTTGTAGAACAGAGATTTGAGTTTGAGCGAGGCTTTCGTTCTCAAACAGCCTCTCTGTAACAGCCTTTGCCCAGCTGTACCGGTAATAAGGAGACAGTTAAAGAATCAGAAAAATATTCAAAGCCTTGTCTGGTAGTAAAACTTCTATTTTTCTAATATGTACAATGCATAAGCTGATgaaagaaggagagggagagaaagaaagtgagattATAAAGCACTTATTCCTGCAATAATTCGATTTTTGTGTCTTTTAGTCAGAAAGAATAGTAGtgttagtgctttttttttcccctgaatgCGTAATTGTTGTGTCTAATTGTTGAGTCTAAGCCCTTCAAGCGTGCCATAGCAGTTTCTCCTAATGTTGAGTCCACAGAACATTCCAGTGAAATTATAATGTGACTATTATAAAATGCACACATGATACAGAAACACCACGCTGATATCCCATGAACAACCATTTCTGCTAGTTGTTAGTAATTCTGTAGGCACTTCTATTCCCCCCCACCTTCTCATCATGCTCCTTACACAATATACTATGTATTTTCCTCAGGGAAGAGTTGTACTTCTAACTCTGTTTGACTCAGTTAACATTGATTTTTATGAGATGATTGGTCCTGCCCTCCATTATTTCCTGTACCTACATTCTCAATATATACCATAGTTATGTTAACAGGGTCAGCATGGCTCATTAAATGCAATTACAGTATAACACACTAAAATTAGATCTGACATTTATTACCATAGAGAATGTGTTTCAGTAATCATGTAACTTTGACTCAGTGCATCTGCAGTGTATTTATTTGATTGTTCTTGGCCAGCGACTTTGAAATTACACAGAAACTTTCATCAAATCTGTGAATGACAATCCAGCGGAACATTTGAAATTGGCAGTGCGTGGACTTAAATACCAAATGCTCAGGGAGAACATTTTACTAAAAGTACTGGGGCAGACCATTTCTGTAACGTAGCAACATAACATTTTCTgtcgttttttttaaaaagaagtacTTCTCTGGTTAGTAAGAGTCATCATCTCATGTTCACTTTGTGCACCTGTAACAAATCCTACACATCTCATCAGGTCTCAGAAATGCCTAAAACAACAGATCAATACGGTTCAGTGCACTCACATTATGCTACCAACAGGGTCCAACATCATACAAAAACAAGCAATGAGCTATAATGTCACCCCTTTTAGTGTAACTTTCACACATATTGTATGAATCTATGTGCCAAATACCTCTTGTACAATTAGCTCCGCTAGCAGACTCTGCCCATGAGCCAGGAGTGCGTAGTGTGTTACTAATACGGGTTTCGACAGGGTAGCCACTGCTGTGGAGTTCCCTCTGAACAAGCTTTGATACACAGAAGACTGTTGTAATTCTGTTCTTTTCAGTCTACTTGATCCATATCGTGGTGTCCTAGTTAATGCTAATTACAACGATACCCGTTTgcaccataaaaaaaaactgtactgaTTTTTTTGTCAGTGTAGTTTGTTTTAGGTATTAAAAGCAATACAGGCTGTAAAGTAGAAACTTtggacaaatttattttttcaatcaAAAGTACTGAACCATCTCTGGATCTGTGGTATTGACGTGTCGATGTACATATAAATACTCTCACTTGTGAAAGAGTTGCGCATCAGAAGTTTCCatattgtgtgttgtattgtgtgtgtgaaacagtcTCTTGAGATCTTTCTACCCTCTTTGTTAATTTTGTAAGAAGcaatatgagtgtgtgtctgtgagtggtgtgtatagtgtgtgtggtgtgtaagtCAAACCCCAGACAAGGCTTTAATAAAGTAGATAAGGAGCAGCAGGGTCAGCTGGTGAAGTAAATGGTATATGGATATCTTAGTTTTCCCAGGTTTTACACACTTTTAGTAGCAAGTTTGAACTCATCCATTAGGCTGGACAAGCATGACACAGTGCAcgccattattttattaaaatcctTCACACCTACATTATGCAAATCTGCCACTGACGGGCCTATGCAGTCACAAATACCACAGAACGAGTTTACACTGTTCCATCGTAATAACTCCGTCATTCTTTCTTAGTGACGACACCTAGACTGCCAGAAGccattttaataatattcaacATGTTCTAATACGTGGAATTAATGTGTGATGTCATGCTTGTGACGCCATTTTGATTTGAAGGTGAAAGTGTTATTAAGATGTAGAGATTACCAATCAttttcattgcattttttttaaaatgtgaccTTTTATCCCGAAAGCACAGCTAATAAAGTGAGATATGTTTTAGAATATagagcaaaagacaaaaaaaagacaaacaaaaaaactttagcCATAATCGAATGTCAAGCAATAATATatatggtattattattattattattattattattattcatctttGTGCATAGGCTTTGGACACCTGCATGTAAATACACCTCTTATTTAtcatgttttgttgtttcttttctctctctctctctctctctcgctctctctgattatttttttgttttgttttgtttgtatatttgACTAGTTCTGTTCCCAGGTGGAGAACTAAGAACTTCATATGGCCTGTAAACTGTACAGCTTgatttccctctctttctctctccccctcagCTTTCcgcttttaattcactatatttaatgttattattgaTCACATGTATAAAAGTAACTTTGTAACATCTGTCTgtataggtaaaaaaaaaaaaaaaaaaatactgctatTAAGACCTACTCAGTGCaaatatttatctgtttattggaTACATCATGCTGTACAGTATCTCTGTTTTTAGTATACTTCTCTCTTTTAGAGTTAGTTTGATAGCGGTAGGGCGTGctgacatttaattttgtgttaaaCTGACGTGTGGTGCTAGGTAAGTTACTTtcgtgaacaaaaaaaaaacaaactcttgATTCATAGACAAGGCCACTCGATTAGTTCATTCATTTCACTAAGTATTGATGCATTCTTGATATTAGGACTCAATAAATGATAAGGATAACGATAAAGAATAATGATAGTGGTAAATTTCCTTTAAATCCCCAGCAAGTACCTGTATCAGTGTGCTAGTCTTGGGATTGCGCTCTTGTTTCCTTCTCACTTTAAGACTATAAGTAAAAGCGGTATCATCTAATTAAGATGCTATTATTAAACGTCGCATTCTGATTTGTcacgataaaaaaaaatgtttaagctAAAGAAAAGCAGTATTGTGTTGATCCTTTTGATTGTGAGAACCACTGGCTAGACTTGTAGCTGTTCAATTTTGCAAATGCAATGCCTACTGGTACTTTTCTCAGAAATCCTACGCTGGAAAAAGTCTTTAGATACGCGATACACAGATACAAGAGAGCACATACTGGATGATAGAATTATTGGCAGCCTCATTTTGGCTCTCTTTATTTTTGACTTAGCCTAGACAACAGCTTCATTcgtatttatttttctgcactAATGTGTACGACATCACTGTCAATAATTAAACTtggcgcacacacactgtgggTTAAGTGTTAAACGTGCAAGAGGTCGAAATTGTCAGTTGTAGGTTCatatttgctaaaatatttcattttctctgtagcAAGTATGACAGCTATCCTCGCAATAATACACAACAAACACCGCTGAGTGCCTCTCAGTGGTCCAGGATGCAGAAATGATGTAGTTTTCACTGTTCACTATAGTCAAATGGTCATGTATTTGCACATGTAGGTGAATTCCATCCAAATACTTCACGtcttttatatgtaaatgttcTGTACTTTTGTTTTATGACCATGTGAACATCTTCCACCGCTTGTAGTTTTCTGTATGGTTCATTTCGCAAACTCTTCTTGCAGTGCACAGTCAGTGTTCCTTTCCTCCTTTACTTTTTTTGCTGACATTAATATAACCTTGTGGAATAATGGTAAAACATGCatactgaatgttttattttcagaccCTGGTTTGCGCATTTGTAAAAGACAATAGACAATCCACTCTGTGTTCCCCCTTATTTACAATACTTCCAATTTCTGTTCGTTATTGCAGACAAATGACTAATGCATTGTATTTTAAGTATTCACATGTGTATGTAAGATATGCATAATACACATTTGGATTTCTTTCCTGTTGTGTGTTAAATGTGAGCTCGCCGGGGGACTGGGTTTTACTCCACACACAGGCAGCATATACACGGGGAGGGAAAAATGCCAAGACAAGTTTGTGGTTGTCACAAATTTTTACATCACACGTTTGCTACTGATCTAACCGTGGGGAGAGATGATCATGTACCTTTTTATCCAGCTCTTTTGAACTCTATTTAGGAGGTAGTATCTTCACAATAATAGTTTTGCTCCTTCTCTTCGTCTGATTcttaaatatgaaaattaagtattttgattcattttgtaaatacagctgtaaagaaaaataagaaatttaaTGTTGTCTTTTAAATACTTTTCATTCTAATATGAATGTTGTTATATTGTACTTAGAAACTGTACCTTTAATATTACCTTTATTAAAAGTGCATTGGACACATCGATTTTAGATGTGCTTTATGTGCTGTTATCCCATAATAAAATTTACCGCTTGTAATTGG
>XM_026918893.2
CCAGGAGAAAAGCGCCGCCCCTGGTCACGCCCCCAAAAAGCAATTCGTTGCCTGCTGTGCCAATCAAAGGAGTAGGGAGGGCGGGCCGTGTGTTGATGTCACAGTCACGTGGACGGTGGTGTGGTGGCGCGCGAGCGAGTCGGAGCGGCAGAGGCGCGCTGGCCAGCTGCTGCCGAAACAGCAGGGGGAGAAAATCCGCTAGCGCTGCTCCCGCTTTGCTCGCTTATGGACCGCCGAGCTTAATGATGTATTTTGTGATTTCAGCGATGAAAGCTCAAATTGAAATTATTCCCTGCAAGATCTGTGGAGACAAATCATCAGGCATCCATTACGGTGTGATAACATGTGAGGGCTGTAAGGGTTTCTTCAGGAGGAGTCAGCAGAGCAATGCGGCATATTCGTGCCCACGTCAAAAGAACTGCCTGATCGACCGTACCAGCCGAAACCGCTGCCAGCACTGCAGGCTGCAGAAGTGTCTGGCTGTGGGCATGTCACGGGACGCGGTGAAGTTCGGGCGCATGTCAAAGAAGCAGCGGGACAGCCTGTACGCTGAAGTGCAGAAGCACCGtctccagcagcagcagagggagcagcagcagcagccaggCGAGGCTGAGCCACTCACGCCCACCTACGGGCTCTCAGCAAACGGCCTCACTGAGCTGCACGATGAGCTGAGCGGTTACATGGACGGCCACACGGCCGATGGCACCAAGCCTGACTCAGGCGTCAGCAGCTTCTACCTGGACATCCAGCCCTCACCCGACCAGTCCGGTCTGGACATCAACGGCATCAAGCCCGAGCCCATCTGCGACTTCACGCCAGCCTCAGGCTTCTTCCCATACTGCTCCTTCAGCAACGGCGAGACCTCCCCCACCGTCTCCATGGCCGAGCTAGAGCATCTGGCCCAGAATATCTCCAAGTCCCACATGGAGACATGTCAGTATCTGAGAGAGGAGCTGCAGCAGATGACCTGGCAGGCCTTCCTgcaggaggagatggagagctACCAGAACAAGCCCAGAGAAGTCATGTGGCAGTTGTGTGCCATAAAAATCACAGAGGCCATCCAGTACGTGGTGGAGTTCGCCAAGCGTATTGATGGTTTCATGGAGCTCTGTCAGAATGATCAGATTGTGCTGCTCAAAGCAgGCTCTTTGGAGGTGGTGTTTGTCAGAATGTGTCGTGCCTTTGACCCTCAAAACAACACAGTCTATTTCGATGGAAAGTATGCTGGCCCTGATGTGTTTAAGTCATTAGGTTGTGACGACTTGATCAGCTCCATCTTTGAGTTTGGGAAAAACTTGTGTTCTATGCACCTGTCTGAGGACGAACTCGCCCTATTCTCAGCATTTGTGTTGATGTCTGCAGACCGCTCCTGGCTCCAGGAGAAAGTGAAGGTGGAGAAGCTACAGCAGAAGATCCAGCTGGCCCTTCAGCATGTCCTGCAGAAGAACCACAGAGAGGATGGCATACTAACAAAGttaATATGCAAAGTGTCAACCCTGCGAGCGCTGTGCAGCAGGCATACAGAGAAGCTGACCGCTTTCAAAGCAATATACCCGGACATTGTGCGTACCCACTTCCCGCCCTTATACAAGGAGCTCTTTGGATCAGACTTTGAGCAGTCCATGCCTGTGGACGGGTAGCAGCCCCTTCGTCCGCCCCGCTCTGAGGGGCCACAAACGCCGTGGGGAATGTCGAGCATGAATCTGAGACACTTTACCAGTGccctgcacatacacacatacacaaacacatacacaaacacaaaacaggacAGCTAACCTGCtgcacacactttctttttttttgtggttgttgttgttgttttccttcgGGAGGGGGGTACAGCAAGATGACTTTTATTTGGAGGGTTGATTTTGTGAGGTTTATCCCCTCCTTTTTTGACACAAGTGGGATTGGGAAGGCCCAGGGGAAAGGATGAGGAGATGAAGatgcttgttttctctctctctctctctctctctctttctctctctctctctctctctctctcttttcctggcTCAACCTGAAGCACTCATGCATACGATTCCAGAATGGTCCCTCGATAATTTCTAAATGATCACCAGAAATGGTGTTTCCGTCCTATTGTATCAAACCTTTAAATTCTTCAAAGAACGCAGCCATTAATTTGgatctaatttttttaaacaatgattataattataagaAATCAGTGAGTCATTACTTATTACACCCTCCGTGTAATAGTAGGCATGTGCTAGGTTAGGCCCCTCTCtactctttctgtcttttgctGGGAAGCTGCTGCTCAGAATGTAAACCAGCAATAAAAGAGGTCAAAAGAGGAGAGCCAGATGAGGAGAGAGACGgtgaaagggagagagaaggcgagaaagagaaagcatggGGCACGTGGAACGGAGCCGTCTGCATGGGGTGACACGAAACTGACGCCTTTCTAAGGACAAtcgttaaaaaaaagagaagaaagaagaaaaaataagtaGAATTCTGGTAAttctagtttttaaaaaaaatgcaattactTTTAGCTGTCGAGCACTTCATCCACCGTGGTTGCTTAGTGAGATCATATAAGGCCATCTGCTATTAAATCCTTTTTCTGGACAGATTATGGCAGTTTAACTGAGCACACCGCCACAACGCAAGGGTCCATTCCACCTGTTTTCTAATGTGCTACAGGGTATACGGTCATAAGTACTTActatacagaaaagaaaagtaatgtttatagaatctattttaaataacatgtaTAATATTAGTAGCTAGACTATTCTTAATTGTCAAAATTGATAAGGCACTTTTATTTGCACCTTTCTTTAATTTAAGACTTGTATATTTACCTAGTGATGTGTTGCATGTGCAAACAGAAATACAAGCGAAAAACCACCGACTCACAGAGGCTACATGTTGGAAGCTcctacagatgtgtgtgtgtgtgtgtgagcgagcaAGTGTGTAAGGATAAGATCAATGCTGGGTAAAGGCTGACAGAGAGGTGTATAGAGTTGCATCGGGGTTTTCGGCTCAGATCAGTTTTAGCGCTTTACAGAATGAGAAGTGTGTGCAAGGCTGAAcctgatcccagatcagcatGTTCTACAACACTGCCAATCCACGTCTCACCTTGTCTAAAACCGGTGTAACCGTATGACTTGTTAGCAAGCTTGATTTTCTCTTAGGTGTAATGCCCATTTTCAGCACAAACGTAAAGCACAATAGTTAAATCATTGCCATTAAAGTGTGTGGAAAGCAGGCGCTGGGGTTTAGAGTAATAAATTTTCATTGTGCAGTGCATGTTAGGAGCTAGTCAATGGTTCCATCTAGTGGTGAAGATCCCACAGCATCTCTCAGTATTTCACATATGGCTTgagcattcatttattaatgatacAGCGTGCAGACTTCCCTGGTTAATTCTGCCCCATCTGCTTTTGTAGAACAGAGATTTGAGTTTGAGCGAGGCTTTCGTTCTCAAACAGCCTCTCTGTAACAGCCTTTGCCCAGCTGTACCGGTAATAAGGAGACAGTTAAAGAATCAGAAAAATATTCAAAGCCTTGTCTGGTAGTAAAACTTCTATTTTTCTAATATGTACAATGCATAAGCTGATgaaagaaggagagggagagaaagaaagtgagattATAAAGCACTTATTCCTGCAATAATTCGATTTTTGTGTCTTTTAGTCAGAAAGAATAGTAGtgttagtgctttttttttcccctgaatgCGTAATTGTTGTGTCTAATTGTTGAGTCTAAGCCCTTCAAGCGTGCCATAGCAGTTTCTCCTAATGTTGAGTCCACAGAACATTCCAGTGAAATTATAATGTGACTATTATAAAATGCACACATGATACAGAAACACCACGCTGATATCCCATGAACAACCATTTCTGCTAGTTGTTAGTAATTCTGTAGGCACTTCTATTCCCCCCCACCTTCTCATCATGCTCCTTACACAATATACTATGTATTTTCCTCAGGGAAGAGTTGTACTTCTAACTCTGTTTGACTCAGTTAACATTGATTTTTATGAGATGATTGGTCCTGCCCTCCATTATTTCCTGTACCTACATTCTCAATATATACCATAGTTATGTTAACAGGGTCAGCATGGCTCATTAAATGCAATTACAGTATAACACACTAAAATTAGATCTGACATTTATTACCATAGAGAATGTGTTTCAGTAATCATGTAACTTTGACTCAGTGCATCTGCAGTGTATTTATTTGATTGTTCTTGGCCAGCGACTTTGAAATTACACAGAAACTTTCATCAAATCTGTGAATGACAATCCAGCGGAACATTTGAAATTGGCAGTGCGTGGACTTAAATACCAAATGCTCAGGGAGAACATTTTACTAAAAGTACTGGGGCAGACCATTTCTGTAACGTAGCAACATAACATTTTCTgtcgttttttttaaaaagaagtacTTCTCTGGTTAGTAAGAGTCATCATCTCATGTTCACTTTGTGCACCTGTAACAAATCCTACACATCTCATCAGGTCTCAGAAATGCCTAAAACAACAGATCAATACGGTTCAGTGCACTCACATTATGCTACCAACAGGGTCCAACATCATACAAAAACAAGCAATGAGCTATAATGTCACCCCTTTTAGTGTAACTTTCACACATATTGTATGAATCTATGTGCCAAATACCTCTTGTACAATTAGCTCCGCTAGCAGACTCTGCCCATGAGCCAGGAGTGCGTAGTGTGTTACTAATACGGGTTTCGACAGGGTAGCCACTGCTGTGGAGTTCCCTCTGAACAAGCTTTGATACACAGAAGACTGTTGTAATTCTGTTCTTTTCAGTCTACTTGATCCATATCGTGGTGTCCTAGTTAATGCTAATTACAACGATACCCGTTTgcaccataaaaaaaaactgtactgaTTTTTTTGTCAGTGTAGTTTGTTTTAGGTATTAAAAGCAATACAGGCTGTAAAGTAGAAACTTtggacaaatttattttttcaatcaAAAGTACTGAACCATCTCTGGATCTGTGGTATTGACGTGTCGATGTACATATAAATACTCTCACTTGTGAAAGAGTTGCGCATCAGAAGTTTCCatattgtgtgttgtattgtgtgtgtgaaacagtcTCTTGAGATCTTTCTACCCTCTTTGTTAATTTTGTAAGAAGcaatatgagtgtgtgtctgtgagtggtgtgtatagtgtgtgtggtgtgtaagtCAAACCCCAGACAAGGCTTTAATAAAGTAGATAAGGAGCAGCAGGGTCAGCTGGTGAAGTAAATGGTATATGGATATCTTAGTTTTCCCAGGTTTTACACACTTTTAGTAGCAAGTTTGAACTCATCCATTAGGCTGGACAAGCATGACACAGTGCAcgccattattttattaaaatcctTCACACCTACATTATGCAAATCTGCCACTGACGGGCCTATGCAGTCACAAATACCACAGAACGAGTTTACACTGTTCCATCGTAATAACTCCGTCATTCTTTCTTAGTGACGACACCTAGACTGCCAGAAGccattttaataatattcaacATGTTCTAATACGTGGAATTAATGTGTGATGTCATGCTTGTGACGCCATTTTGATTTGAAGGTGAAAGTGTTATTAAGATGTAGAGATTACCAATCAttttcattgcattttttttaaaatgtgaccTTTTATCCCGAAAGCACAGCTAATAAAGTGAGATATGTTTTAGAATATagagcaaaagacaaaaaaaagacaaacaaaaaaactttagcCATAATCGAATGTCAAGCAATAATATatatggtattattattattattattattattattattcatctttGTGCATAGGCTTTGGACACCTGCATGTAAATACACCTCTTATTTAtcatgttttgttgtttcttttctctctctctctctctctctcgctctctctgattatttttttgttttgttttgtttgtatatttgACTAGTTCTGTTCCCAGGTGGAGAACTAAGAACTTCATATGGCCTGTAAACTGTACAGCTTgatttccctctctttctctctccccctcagCTTTCcgcttttaattcactatatttaatgttattattgaTCACATGTATAAAAGTAACTTTGTAACATCTGTCTgtataggtaaaaaaaaaaaaaaaaaaatactgctatTAAGACCTACTCAGTGCaaatatttatctgtttattggaTACATCATGCTGTACAGTATCTCTGTTTTTAGTATACTTCTCTCTTTTAGAGTTAGTTTGATAGCGGTAGGGCGTGctgacatttaattttgtgttaaaCTGACGTGTGGTGCTAGGTAAGTTACTTtcgtgaacaaaaaaaaaacaaactcttgATTCATAGACAAGGCCACTCGATTAGTTCATTCATTTCACTAAGTATTGATGCATTCTTGATATTAGGACTCAATAAATGATAAGGATAACGATAAAGAATAATGATAGTGGTAAATTTCCTTTAAATCCCCAGCAAGTACCTGTATCAGTGTGCTAGTCTTGGGATTGCGCTCTTGTTTCCTTCTCACTTTAAGACTATAAGTAAAAGCGGTATCATCTAATTAAGATGCTATTATTAAACGTCGCATTCTGATTTGTcacgataaaaaaaaatgtttaagctAAAGAAAAGCAGTATTGTGTTGATCCTTTTGATTGTGAGAACCACTGGCTAGACTTGTAGCTGTTCAATTTTGCAAATGCAATGCCTACTGGTACTTTTCTCAGAAATCCTACGCTGGAAAAAGTCTTTAGATACGCGATACACAGATACAAGAGAGCACATACTGGATGATAGAATTATTGGCAGCCTCATTTTGGCTCTCTTTATTTTTGACTTAGCCTAGACAACAGCTTCATTcgtatttatttttctgcactAATGTGTACGACATCACTGTCAATAATTAAACTtggcgcacacacactgtgggTTAAGTGTTAAACGTGCAAGAGGTCGAAATTGTCAGTTGTAGGTTCatatttgctaaaatatttcattttctctgtagcAAGTATGACAGCTATCCTCGCAATAATACACAACAAACACCGCTGAGTGCCTCTCAGTGGTCCAGGATGCAGAAATGATGTAGTTTTCACTGTTCACTATAGTCAAATGGTCATGTATTTGCACATGTAGGTGAATTCCATCCAAATACTTCACGtcttttatatgtaaatgttcTGTACTTTTGTTTTATGACCATGTGAACATCTTCCACCGCTTGTAGTTTTCTGTATGGTTCATTTCGCAAACTCTTCTTGCAGTGCACAGTCAGTGTTCCTTTCCTCCTTTACTTTTTTTGCTGACATTAATATAACCTTGTGGAATAATGGTAAAACATGCatactgaatgttttattttcagaccCTGGTTTGCGCATTTGTAAAAGACAATAGACAATCCACTCTGTGTTCCCCCTTATTTACAATACTTCCAATTTCTGTTCGTTATTGCAGACAAATGACTAATGCATTGTATTTTAAGTATTCACATGTGTATGTAAGATATGCATAATACACATTTGGATTTCTTTCCTGTTGTGTGTTAAATGTGAGCTCGCCGGGGGACTGGGTTTTACTCCACACACAGGCAGCATATACACGGGGAGGGAAAAATGCCAAGACAAGTTTGTGGTTGTCACAAATTTTTACATCACACGTTTGCTACTGATCTAACCGTGGGGAGAGATGATCATGTACCTTTTTATCCAGCTCTTTTGAACTCTATTTAGGAGGTAGTATCTTCACAATAATAGTTTTGCTCCTTCTCTTCGTCTGATTcttaaatatgaaaattaagtattttgattcattttgtaaatacagctgtaaagaaaaataagaaatttaaTGTTGTCTTTTAAATACTTTTCATTCTAATATGAATGTTGTTATATTGTACTTAGAAACTGTACCTTTAATATTACCTTTATTAAAAGTGCATTGGACACATCGATTTTAGATGTGCTTTATGTGCTGTTATCCCATAATAAAATTTACCGCTTGTAATTGG

Function

symbol description
roraa Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Acts upstream of or within cerebellum morphogenesis and positive regulation of gene expression. Predicted to be active in nucleus. Is expressed in brain and eye. Orthologous to human RORA (RAR related orphan receptor A).
rora Enables several functions, including ligand-activated transcription factor activity; oxysterol binding activity; and transcription coregulator binding activity. Involved in several processes, including negative regulation of I-kappaB kinase/NF-kappaB signaling; positive regulation of macromolecule metabolic process; and triglyceride homeostasis. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus.

NR:

description
PREDICTED: nuclear receptor ROR-alpha isoform X1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08532 NR1F1, RORA; RAR-related orphan receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918892.2 True 8099 mRNA 0.41 11 16567295 16800368
XM_026918893.2 False 8065 mRNA 0.41 10 16567295 16630301

Neighbor

gene id symbol gene type direction distance location
ice2 ice2 coding downstream 1293 16547325 ~ 16566002 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding downstream 21025 16540852 ~ 16546270 (-)
bnip2 bnip2 coding downstream 108900 16443455 ~ 16458395 (-)
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding downstream 204920 16325942 ~ 16362375 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding downstream 299309 16265562 ~ 16267986 (-)
c2cd4a LOC108275248,LOC108433606 coding upstream 87969 16888337 ~ 16890007 (-)
etfa etfa,LOC107712526,LOC107557988 coding upstream 313386 17113754 ~ 17128284 (-)
scaper scaper,LOC107662441,LOC107712524,LOC107688925,LOC106561156 coding upstream 340047 17140415 ~ 17234857 (-)
ctdspl2a ctdspl2a,LOC108275364,LOC107712523,LOC107589331,LOC107688927,LOC107739078,LOC107557990 coding upstream 436745 17237113 ~ 17248412 (-)
sqor sqrdl,LOC107739076,LOC107557991,LOC107662477,LOC102778185 coding upstream 449170 17249538 ~ 17255164 (-)
G149841 NA non-coding downstream 68834 16496171 ~ 16498461 (-)
G149836 NA non-coding downstream 106250 16460791 ~ 16461045 (-)
G149718 NA non-coding downstream 142691 16422666 ~ 16424604 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding downstream 249369 16309890 ~ 16317926 (-)
G149649 NA non-coding downstream 311809 16254647 ~ 16255486 (-)
G150089 NA non-coding upstream 218588 17018956 ~ 17019183 (-)
G150036 NA non-coding upstream 227749 17028117 ~ 17052512 (-)
LOC117597939 NA non-coding upstream 274878 17075246 ~ 17078085 (-)
G150130 NA non-coding upstream 325046 17125414 ~ 17150481 (-)
G150139 NA non-coding upstream 347533 17147901 ~ 17148608 (-)
acsbg1 acsbg1 other downstream 338961 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 575201 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 847720 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1338310 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1479235 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 252985 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1404283 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1502774 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1504270 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1553606 18353974 ~ 18364036 (-)

Expression


Co-expression Network