dnaja (dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738)


Basic Information

Item Value
gene id dnaja
gene name dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16231335 ~ 16235381 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918914.2
GTTCTGCAGCTCCTGCGCTTATATATAGGCGCAGCGGCCATCTTCATTCAGTCACAGCAGCACCATCTACCCGGCACGCTGTAAGAACACAGGGAGCAAGGCAATTTCTCAAGGAAACAAATAGTCTGGCCAAAAATGGTGCGAGAGACCGGCTACTACGATATTCTCGGAGTAAATCCGAAATCCTCTGCGGATGAAATCAAGAAAGCATATCGAAAACTGGCCCTGAAATACCACCCGGACAAAAATCCAAATGAAGGCGAAAAATTCAAACTCATTTCACAAGCCTATGAAGTCCTGTCAGATCCTAAAAAGCGAGACTTGTATGACCAAGGAGGTGAACAGGCCATCAAAGAAGGAGGCATGGGTGGAGGAGATTTCTCATCTCCTATGGACATCTTCAACATGTTCTTTGGTGGTGGAGgaagaacacagagagaaaggagagGGAAAAACGTGGTCCACCAACTTAGTGTCACACTTGAAGAAATGTACAGTGGTTCAACCAGGAAACTTGGTCTCCAGAAGAATGTGATCTGTGAGAAATGTGATGGTTATGGAGGAAAGAAAGGGGCCCTTGAGAAATGCTCTAATTGCAAAGGTAGAGGAGTTCAAATCCAGGTACAACAGATTGGACCAGGAATGATTCAGCAGATTCAGAGCATGTGCTCAGAATGCCAGGGGCAAGGCGAGAGGTTCAGTGCCAAGGACCGATGCAAGAACTGCAATGGGCACAAAGTGGAGCGCAAAAAGAAGATTCTTGAGGTCCACATTGACAAAGgTATGAAAGATGGCCAAAAGATCACATTCCATGGAGAGGGTGATCAGGAACCAGGCCTGGAACCTGGTGATGTCATCATTGTCCTGGACCAAAAGGACCACCCTGTATATCAGAGGCATGACGACAACCTGATTATGAAGATGCAGATTAAACTAGTTGAGGCCCTCTGCGGGTTCAAGAAGACAATATGCACACTAGACAACAGAACGCTCATCATCAACTCACCTCCAGGtcaagtaataaaacacaatgacttAAAGTGTATTCAGAATGAGGGCATGCCTGTGTACAGAGATCCATATGAGAAAGGACAGCTCCTCATTCAGTTTGAGGTTGAGTTCCCAGAGAAACACTGGCTTCCAGAGAACATGTTTTCCCAGCTAGAGAGACTGCTTCCCAAGCGAGATGAGGTCATGCTGACTGATGATATGGAAGAGGTTGACCTCTGTGAGGTGGACCATGATTTCCAGCGGAGGAGGTACAGTGGAGAAGCATATGAAGAAGATGAGGGTCCCAGAAGCCATGGAGTACAGTGTCAGACTCAGTGAAACTCCTATTCAGTGCATCTATTAATGCAGCACCTTTTTCTGTGTAAATCTGATATCAGAATTGTCAAATTTGTGAGTGCACTCCCAATTTGACCTTTCATTGGGTAGTTTGTGATCAAGATGTAATTTAATTGGATCAAAACTAAAAAACAAGTGctctcaaagtgctttattcaCCTAGAGATTTCCCTTCTGTTGAAACCTGTTTAAGTGGAAAGGACAGGTGCTGACTTTAATGGTAAAACACCTCCGAGGATCACTATTGATGTGTATTCATGCAATCCGACATGGTGGAAAATTACTGTATAATCAGTATGTTGCTTGATTTGCCCAAgaagtctttttttgtttgcttgtttgtttaattgtacTACTTACAGTAGCATGTACcttttgaatgtgtttgtgggtgtgtgcatTCTGTTCACTTTTATATGAGCcctcttatttatttctaactgtaatttgcttttcttttgtctCACCCACATGAAAAAGCTCAATACAGAAGAAGGGTATCTGTATGCTTTCTATGAAGGTAACACCCCTCACAATTCACCTGTGTAtcaatgaaaaatgtgttttctcaaataaaacatgtcatgtaa

Function

symbol description
dnaja4 Enables chaperone binding activity and unfolded protein binding activity. Involved in several processes, including negative regulation of endothelial cell migration; negative regulation of inclusion body assembly; and protein refolding. Located in cytosol and membrane.

NR:

description
dnaJ homolog subfamily A member 4 isoform X1

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09502 DNAJA1; DnaJ homolog subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918914.2 True 1937 mRNA 0.43 8 16231335 16235381

Neighbor

gene id symbol gene type direction distance location
idh3a idh3a,LOC107757767,LOC107659502 coding upstream 11701 16209778 ~ 16219634 (+)
lrrc61 lrrc61,LOC107752319,LOC107598843 coding upstream 24885 16202775 ~ 16206450 (+)
si:ch211-112g6.4 sh2d7 coding upstream 56501 16170244 ~ 16174834 (+)
LOC113529940 LOC108275177 coding upstream 125188 16093072 ~ 16106147 (+)
fbxl22 fbxl22 coding upstream 164352 16061088 ~ 16066983 (+)
rab8b rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505 coding downstream 6867 16242248 ~ 16251075 (+)
klf13 znf467,klf13,znf746,LOC108274922,LOC107598847,LOC107550220 coding downstream 61212 16296593 ~ 16311059 (+)
LOC113529796 LOC108275431,LOC108433634,LOC108274563 coding downstream 165461 16400842 ~ 16421690 (+)
gcnt3 NA coding downstream 187242 16422623 ~ 16424388 (+)
foxb1a foxb1,LOC103353681 coding downstream 263143 16498524 ~ 16500108 (+)
G149428 NA non-coding upstream 203316 16027607 ~ 16028019 (+)
G149427 NA non-coding upstream 204823 16024844 ~ 16026512 (+)
G149276 NA non-coding upstream 412967 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 476423 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 519418 15711013 ~ 15711917 (+)
G149552 NA non-coding downstream 19303 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 92875 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 103209 16338590 ~ 16341963 (+)
G149722 NA non-coding downstream 204325 16439706 ~ 16440054 (+)
G149723 NA non-coding downstream 210658 16446039 ~ 16449140 (+)
LOC113529564 ano9,LOC108442698 other upstream 408744 15807990 ~ 15822591 (+)
svip svip other upstream 506244 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 578651 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2402004 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2454464 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1598856 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 1947173 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2439629 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2486214 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2512446 18747827 ~ 18796259 (+)

Expression


Co-expression Network