idh3a (idh3a,LOC107757767,LOC107659502)


Basic Information

Item Value
gene id idh3a
gene name idh3a,LOC107757767,LOC107659502
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16209778 ~ 16219634 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918915.2
GTGAACTCTCAGACTCAGACACCTGGAGCTGCTCGGGGAAGATGGCTGGGAACGCGTGGAGGTCAACGATGTATAAAGTGCTGGAGAGATGCGGTGCGTGGATCAGTGAGCAGAGCAAAGCGCAGGAAGTGTCCCGTGTCTTAGGTGCACTGACAAGCCAAACACAGCCCAGAACTTTTTCCAGAGGaCTGCAAACTGTAACACTAATTCCAGGGGATGGAATTGGTCCTGAGATCTCCACAGCTGTAACAAAGATATTTGAAGCAGCTAAAGTTCCCATTCAGTGGGAGGAAAGGAATGTGACAGCTATCAAAGGACCTGGAGGAAAATGGATGATCCCTCCTGAAGCCAAAGAGTCAATGGACAGAAGCAAAATCGGATTGAAAGGACCTCTGAAGACCCCTATTGCTGCTGGCCATCCTTCCATGAACCTGCTGCTTAGAAAGACATTCGACCTGTACGCCAACGTGCGTCCCTGTGTGTCCATTGAGGGTTATAAGACTCCTTACACAGATGTCGACCTGGTTACCATCAGAGAAAACACTGAGGGAGAGTACAGTGGAATTGAGCATGTGATTGTAGATGGAGTCGTGCAGAGTATTAAGCTGATCACAGAAGAGGCCAGCCATCGCATCGCTGAATACGCCTTCGAGTACGCCAGGAATAACCAGAGAACCAGTGTAACAGCTGTTCACAAGGCCAACATCATGCGTATGTCTGATGGCCTGTTTCTGAGGAAGTGCAGAGAGGTGGCTGAGAACTACAAGGATGTCAAATTCACTGAAATGTACCTGGATACAGTGTGTCTGAATatggtGCAGGATCCCACTCAGTTTGATGTGCTTGTTATGCCCAACCTGTATGGTGATATATTGAGTGATCTTTGTGCCGGATTAATTGGAGGTCTAGGAGTGACTCCTAGTGGCAACATTGGCGCTAATGGTGTTGCCATATTTGAATCGgtACATGGAACTGCACCTGATATTGCTGGTAAGGACCTGGCCAACCCTACTGCTCTGCTTCTGAGTGCTGTGATGATGCTGCGGCACATGGGACTGCATGGCCATGCCAAGAAAATCGAGACCGCCTGCTATGACACCATCCGAGACAAGAAGGTTTTGACCAAAGACCTTGGTGGAAATTCCAAGTGTTCAGAGTTCACAGCTGAGATTTGCCGACGAGTACAAGACATGGACTGAGATATGGCACTCTATAATGTCACCGGTTATCTGTGATCGGGTTCCTGCCTCCAAAAGgcacacaaaaaataatttgcCTTCCTATCATTCTATCTATATCTGCGCACAATTATGCTTTAAACATATATGTATCTATTGATTCAAAATGACTGAATGTTGacttaaaatgttgttttttttttcatgtttatttcacctccaaacaaaaaaaagagaactgtTAAAACTTGTCAACGGTATagatgtgtaaaatgtgtttttttttctctgtcaaaTGAAGTGCATAGCCCAAGATATCCTTTATTTATTGACTGGAGATATTCTCTGGTCCCTCACATTTTATCATAACCACTTTGTCACTGGGTTAATGGCAGGCGTAAACGTTGGTCAATTTAAGAgattaaatacattaaagttGCTGATATTTTGAA
>XM_026918916.2
GCATGACATGGCAACCCGGGAATTTCTTACTCCACACAGCTGAGGATGAAGTGAACTCTCAGACTCAGACACCTGGAGCTGCTCGGGGAAGATGGCTGGGAACGCGTGGAGGTCAACGGTGTCCCGTGTCTTAGGTGCACTGACAAGCCAAACACAGCCCAGAACTTTTTCCAGAGGaCTGCAAACTGTAACACTAATTCCAGGGGATGGAATTGGTCCTGAGATCTCCACAGCTGTAACAAAGATATTTGAAGCAGCTAAAGTTCCCATTCAGTGGGAGGAAAGGAATGTGACAGCTATCAAAGGACCTGGAGGAAAATGGATGATCCCTCCTGAAGCCAAAGAGTCAATGGACAGAAGCAAAATCGGATTGAAAGGACCTCTGAAGACCCCTATTGCTGCTGGCCATCCTTCCATGAACCTGCTGCTTAGAAAGACATTCGACCTGTACGCCAACGTGCGTCCCTGTGTGTCCATTGAGGGTTATAAGACTCCTTACACAGATGTCGACCTGGTTACCATCAGAGAAAACACTGAGGGAGAGTACAGTGGAATTGAGCATGTGATTGTAGATGGAGTCGTGCAGAGTATTAAGCTGATCACAGAAGAGGCCAGCCATCGCATCGCTGAATACGCCTTCGAGTACGCCAGGAATAACCAGAGAACCAGTGTAACAGCTGTTCACAAGGCCAACATCATGCGTATGTCTGATGGCCTGTTTCTGAGGAAGTGCAGAGAGGTGGCTGAGAACTACAAGGATGTCAAATTCACTGAAATGTACCTGGATACAGTGTGTCTGAATatggtGCAGGATCCCACTCAGTTTGATGTGCTTGTTATGCCCAACCTGTATGGTGATATATTGAGTGATCTTTGTGCCGGATTAATTGGAGGTCTAGGAGTGACTCCTAGTGGCAACATTGGCGCTAATGGTGTTGCCATATTTGAATCGgtACATGGAACTGCACCTGATATTGCTGGTAAGGACCTGGCCAACCCTACTGCTCTGCTTCTGAGTGCTGTGATGATGCTGCGGCACATGGGACTGCATGGCCATGCCAAGAAAATCGAGACCGCCTGCTATGACACCATCCGAGACAAGAAGGTTTTGACCAAAGACCTTGGTGGAAATTCCAAGTGTTCAGAGTTCACAGCTGAGATTTGCCGACGAGTACAAGACATGGACTGAGATATGGCACTCTATAATGTCACCGGTTATCTGTGATCGGGTTCCTGCCTCCAAAAGgcacacaaaaaataatttgcCTTCCTATCATTCTATCTATATCTGCGCACAATTATGCTTTAAACATATATGTATCTATTGATTCAAAATGACTGAATGTTGacttaaaatgttgttttttttttcatgtttatttcacctccaaacaaaaaaaagagaactgtTAAAACTTGTCAACGGTATagatgtgtaaaatgtgtttttttttctctgtcaaaTGAAGTGCATAGCCCAAGATATCCTTTATTTATTGACTGGAGATATTCTCTGGTCCCTCACATTTTATCATAACCACTTTGTCACTGGGTTAATGGCAGGCGTAAACGTTGGTCAATTTAAGAgattaaatacattaaagttGCTGATATTTTGAA

Function

symbol description
idh3a Predicted to enable isocitrate dehydrogenase (NAD+) activity. Predicted to be involved in isocitrate metabolic process and tricarboxylic acid cycle. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; mesoderm; musculature system; optic tectum; and pronephric duct. Human ortholog(s) of this gene implicated in retinitis pigmentosa 90. Orthologous to human IDH3A (isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha).

NR:

description
PREDICTED: isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0051287 NAD binding molecular_function
GO:0004449 isocitrate dehydrogenase (NAD+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00030 IDH3; isocitrate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918915.2 True 1630 mRNA 0.45 12 16209828 16219634
XM_026918916.2 False 1620 mRNA 0.45 11 16209778 16219634

Neighbor

gene id symbol gene type direction distance location
lrrc61 lrrc61,LOC107752319,LOC107598843 coding upstream 3328 16202775 ~ 16206450 (+)
si:ch211-112g6.4 sh2d7 coding upstream 34944 16170244 ~ 16174834 (+)
LOC113529940 LOC108275177 coding upstream 103631 16093072 ~ 16106147 (+)
fbxl22 fbxl22 coding upstream 142795 16061088 ~ 16066983 (+)
usp3 usp3,LOC107659494 coding upstream 149610 16049084 ~ 16060168 (+)
dnaja dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738 coding downstream 11701 16231335 ~ 16235381 (+)
rab8b rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505 coding downstream 22614 16242248 ~ 16251075 (+)
klf13 znf467,klf13,znf746,LOC108274922,LOC107598847,LOC107550220 coding downstream 76959 16296593 ~ 16311059 (+)
LOC113529796 LOC108275431,LOC108433634,LOC108274563 coding downstream 181208 16400842 ~ 16421690 (+)
gcnt3 NA coding downstream 202989 16422623 ~ 16424388 (+)
G149428 NA non-coding upstream 181759 16027607 ~ 16028019 (+)
G149427 NA non-coding upstream 183266 16024844 ~ 16026512 (+)
G149276 NA non-coding upstream 391410 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 454866 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 497861 15711013 ~ 15711917 (+)
G149552 NA non-coding downstream 35050 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 108622 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 118956 16338590 ~ 16341963 (+)
G149722 NA non-coding downstream 220072 16439706 ~ 16440054 (+)
G149723 NA non-coding downstream 226405 16446039 ~ 16449140 (+)
LOC113529564 ano9,LOC108442698 other upstream 387187 15807990 ~ 15822591 (+)
svip svip other upstream 484687 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 557094 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2380447 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2432907 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1614603 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 1962920 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2455376 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2501961 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2528193 18747827 ~ 18796259 (+)

Expression


Co-expression Network