rps27l (rps27l,zgc:136826,LOC107598918,LOC107752326)


Basic Information

Item Value
gene id rps27l
gene name rps27l,zgc:136826,LOC107598918,LOC107752326
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16236143 ~ 16238157 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918917.2
CCCGCTCATTGAGTACAATAGAAAGTCTGGCTCGCGGGGATTTATTAAAAGCGCATGGCAACCGCAGGACTGCTTCACTTCAGGAATCAGACACTGAGCTGTGTACGTCGGAGAAAAGCGACTGCTAGAGAAAATGCCTtTGGCTAAAGACTTACTAAACCCGACTCTCGACTTTGAGAGGAGGCAACATAAGAAGAAGAGACTGGTCCAGAGTCCAAACTCTTACTTCATGGATGTGAAATGCCCAGGTTGCTATAAAATCACAACAGTGTTCAGCCATGCCCAGACAGTGGTGTTGTGTGTTGGGTGCTCCACAGTGCTCTGCCAGCCCACAGGAGGAAAGGCCAGGCTAACTGAGgGTTGTTCGTTCCGAAGAAAGCACTGAAGAGAATAATTAAATTGGATCTtttgaataaaaagaatatGTTCCAATTTCCTTATTTTTTCATTGATTGCAATGAGTGAAATGCCCCTACAGTGATTATTATGTGGAAGATTATATCTACTGTATCGCTTTTCTGAATAAAGCCTGAGCAGAGCATC

Function

symbol description
rps27l Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS27L (ribosomal protein S27 like).

NR:

description
PREDICTED: 40S ribosomal protein S27-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02978 RP-S27e, RPS27; small subunit ribosomal protein S27e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918917.2 True 543 mRNA 0.44 4 16236143 16238157

Neighbor

gene id symbol gene type direction distance location
cib2 cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862 coding downstream 37028 16180917 ~ 16199115 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding downstream 70144 16141596 ~ 16165999 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding downstream 95239 16121657 ~ 16140904 (-)
ca12 ca12 coding downstream 192291 16028155 ~ 16043852 (-)
man2c1 man2c1,LOC107752311 coding downstream 211285 16014920 ~ 16024858 (-)
LOC113530180 LOC108274564 coding upstream 13187 16251344 ~ 16254496 (-)
LOC113529693 LOC108274564,LOC108433637,LOC108441836,LOC107750517 coding upstream 18353 16256510 ~ 16262939 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding upstream 27405 16265562 ~ 16267986 (-)
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding upstream 87785 16325942 ~ 16362375 (-)
bnip2 bnip2 coding upstream 205298 16443455 ~ 16458395 (-)
LOC117597941 NA non-coding downstream 4334 16230614 ~ 16231809 (-)
G149495 NA non-coding downstream 140968 16093072 ~ 16095175 (-)
LOC113529609 NA non-coding downstream 143213 16068429 ~ 16092930 (-)
G149366 NA non-coding downstream 332241 15903692 ~ 15903902 (-)
G149364 NA non-coding downstream 333501 15902440 ~ 15902642 (-)
G149643 NA non-coding upstream 11004 16249161 ~ 16251085 (-)
G149649 NA non-coding upstream 16490 16254647 ~ 16255486 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding upstream 71733 16309890 ~ 16317926 (-)
G149718 NA non-coding upstream 184509 16422666 ~ 16424604 (-)
G149836 NA non-coding upstream 222634 16460791 ~ 16461045 (-)
acsbg1 acsbg1 other downstream 7809 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 244049 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 516568 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1007158 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1148083 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 815196 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1966494 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2064985 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2066481 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 2115817 18353974 ~ 18364036 (-)

Expression


Co-expression Network